Spo04981 (gene)

Overview
NameSpo04981
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPolypyrimidine tract-binding protein-2-like protein
LocationSpoScf_03870 : 15177 .. 16395 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTTTGGGATCGGGGGAGAACTGTGTAGTAGACGGTGAAAGCAATGGGAGCTTTAACCCTGTTACCGATTCAGTTGACGAGGAACCTGTCAGCGAGCTTTCTTTATGGTCAGTGTACTTCAAGTCGTTAGGGTTTTATGTTTTCTCATATTAAATACGGAGTATCCTATTTTAACATGAACTTGCTGATGACTGTTTTGATATCCAAGTTGATAATACCGTTGAGAATAAACATCTCAAGATTATGAAAGTTAAGTTGCAACATTTGAGTGATTTTTTGTATCTGAGAGATAACATTCTCATTTTAATCATGGAAACTGAGATCTTGAAATTGGAGAACTTGGTGGTCTCTGGATGTTTACATTGCATATTTATTAATATTTGTCTTTCTACTTGTGGATGTGTGTTTTTTTCATCTTTTAAATAAGATGGCTTGTGAAGCTTATTGTGCTTTTATCCCTCTGGCTCTAAATTTGTTTTGTTATCTCAAACTTTGTGCAGTGATCAAGATGCAGTTTCTACTGCACCAAATGCGAACCATGCAGATCATTCACAATCACCTTCTCATTTACCGGGCAAGAATTCATCCATTGATACCGAAGTATCTTCTGCTGCTATAGTTGCAAAAGATGATCAGCCAAAGCAAGAAGAGACCTTACCAGGTAAGCCCCCCGTTTCCTGTTGTTCAAACTGCTCCAAGTACGTACTATTTTGTCGATTGCAGAACTTTAATTTGATATTTAGTAACCTTGGTGGATGATTGATTTCACATGGAATTATTCAGCTTTTTTTTACCCTGTATTGCAGGATTTTCTTGGCTGCCTCGGTTTGGGGCTTCTTGCGTAATGGCTTCTGTGTCGAGTCAGCCACAGTTTCGTTACACCCAACCTCTATTGAAGGTGCTTCATTTGAGAAACTTGCCATGGGAATGCACTGAGGAGGAGCTGATTGAATTGGGGAAGCCTTTTGGTAAGGTTGTCAATACAAAGTGCAATGTTGGGGGCCAACAAAAATCAAGCATTCATCTAATTTGTAAGTTTCCATAGCCTTTCTAGTTTTTCATCATAATCTCGTATGGACAAGCAGACTGGGAGATAGAAAATTTTATGAACTGCCTTGAATTTTTTTTGGTATAAGCATATATTTTAATTGTTTTATTATGCTGTCTTGCAGTCTGGAAAAATATTGCCTTAGGGCCTGTTAGTTTCACGTGA

mRNA sequence

ATGCAAGTTTTGGGATCGGGGGAGAACTGTGTAGTAGACGGTGAAAGCAATGGGAGCTTTAACCCTGTTACCGATTCAGTTGACGAGGAACCTGTCAGCGAGCTTTCTTTATGTGATCAAGATGCAGTTTCTACTGCACCAAATGCGAACCATGCAGATCATTCACAATCACCTTCTCATTTACCGGGCAAGAATTCATCCATTGATACCGAAGTATCTTCTGCTGCTATAGTTGCAAAAGATGATCAGCCAAAGCAAGAAGAGACCTTACCAGGATTTTCTTGGCTGCCTCGGTTTGGGGCTTCTTGCGTAATGGCTTCTGTGTCGAGTCAGCCACAGTTTCGTTACACCCAACCTCTATTGAAGGTGCTTCATTTGAGAAACTTGCCATGGGAATGCACTGAGGAGGAGCTGATTGAATTGGGGAAGCCTTTTGTCTGGAAAAATATTGCCTTAGGGCCTGTTAGTTTCACGTGA

Coding sequence (CDS)

ATGCAAGTTTTGGGATCGGGGGAGAACTGTGTAGTAGACGGTGAAAGCAATGGGAGCTTTAACCCTGTTACCGATTCAGTTGACGAGGAACCTGTCAGCGAGCTTTCTTTATGTGATCAAGATGCAGTTTCTACTGCACCAAATGCGAACCATGCAGATCATTCACAATCACCTTCTCATTTACCGGGCAAGAATTCATCCATTGATACCGAAGTATCTTCTGCTGCTATAGTTGCAAAAGATGATCAGCCAAAGCAAGAAGAGACCTTACCAGGATTTTCTTGGCTGCCTCGGTTTGGGGCTTCTTGCGTAATGGCTTCTGTGTCGAGTCAGCCACAGTTTCGTTACACCCAACCTCTATTGAAGGTGCTTCATTTGAGAAACTTGCCATGGGAATGCACTGAGGAGGAGCTGATTGAATTGGGGAAGCCTTTTGTCTGGAAAAATATTGCCTTAGGGCCTGTTAGTTTCACGTGA

Protein sequence

MQVLGSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSSAAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECTEEELIELGKPFVWKNIALGPVSFT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04981.1Spo04981.1mRNA


Homology
[Close]
BLAST of Spo04981.1 vs. NCBI nr
Match: gi|902203061|gb|KNA14463.1| (hypothetical protein SOVF_107300, partial [Spinacia oleracea])

HSP 1 Score: 264.6 bits (675), Expect = 1.100e-67
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 1 

		  

Query: 15  ESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS 74
           ESNGSFNPVTDSV EEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS
Sbjct: 116 ESNGSFNPVTDSVHEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS 175

Query: 75  AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT 134
           AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT
Sbjct: 176 AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT 235

Query: 135 EEELIELGKPF 146
           EEELIELGKPF
Sbjct: 236 EEELIELGKPF 246
[Close]
BLAST of Spo04981.1 vs. NCBI nr
Match: gi|902186649|gb|KNA10749.1| (hypothetical protein SOVF_141470 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 208.4 bits (529), Expect = 9.300e-51
Identity = 112/154 (72.73%), Postives = 116/154 (75.32%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFN +         +         VSTAPNANHADHSQSPSHLPGK
Sbjct: 303 GVGENCVVDGESNGSFNLLPIQFTRNLSASFLY-----VSTAPNANHADHSQSPSHLPGK 362

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPG-------------FSWLPRFGASCVMASVSSQ 124
            SSIDTEVSSAAIV KDDQPKQEETLP              FSWLPRFGA+CVMASVSSQ
Sbjct: 363 ISSIDTEVSSAAIVVKDDQPKQEETLPAVGPPFPVVQADPRFSWLPRFGAACVMASVSSQ 422

Query: 125 PQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           PQFRYTQP  KVLHLRNLPWECT+EELIELGKPF
Sbjct: 423 PQFRYTQPPSKVLHLRNLPWECTKEELIELGKPF 451
[Close]
BLAST of Spo04981.1 vs. NCBI nr
Match: gi|902186650|gb|KNA10750.1| (hypothetical protein SOVF_141470 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 208.4 bits (529), Expect = 9.300e-51
Identity = 112/154 (72.73%), Postives = 116/154 (75.32%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFN +         +         VSTAPNANHADHSQSPSHLPGK
Sbjct: 297 GVGENCVVDGESNGSFNLLPIQFTRNLSASFLY-----VSTAPNANHADHSQSPSHLPGK 356

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPG-------------FSWLPRFGASCVMASVSSQ 124
            SSIDTEVSSAAIV KDDQPKQEETLP              FSWLPRFGA+CVMASVSSQ
Sbjct: 357 ISSIDTEVSSAAIVVKDDQPKQEETLPAVGPPFPVVQADPRFSWLPRFGAACVMASVSSQ 416

Query: 125 PQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           PQFRYTQP  KVLHLRNLPWECT+EELIELGKPF
Sbjct: 417 PQFRYTQPPSKVLHLRNLPWECTKEELIELGKPF 445
[Close]
BLAST of Spo04981.1 vs. NCBI nr
Match: gi|902192960|gb|KNA12150.1| (hypothetical protein SOVF_128190, partial [Spinacia oleracea])

HSP 1 Score: 169.9 bits (429), Expect = 3.700e-39
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK
Sbjct: 45  GVGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 104

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLP 92
           NSSIDTEVSSAAIVAKDDQPKQEETLP
Sbjct: 105 NSSIDTEVSSAAIVAKDDQPKQEETLP 131
[Close]
BLAST of Spo04981.1 vs. NCBI nr
Match: gi|731330342|ref|XP_010676081.1| (PREDICTED: uncharacterized protein LOC104891984 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.4 bits (272), Expect = 5.900e-21
Identity = 66/117 (56.41%), Postives = 72/117 (61.54%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G  ENC  D ESN  FNP TDS  EE VS+LS CDQD  STAP ANHADH QSPSHLPG+
Sbjct: 340 GVRENC--DRESNADFNPATDSALEETVSKLSSCDQDVASTAPQANHADHPQSPSHLPGR 399

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLL 122
           N  IDTEV S+A   KDD+PKQE        LP  G    + S  S   F Y  P+L
Sbjct: 400 NLPIDTEVISSATNPKDDEPKQET-------LPSVGPPFPVQSAPSY-SFGYVPPML 446
[Close]
BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4M5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_107300 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 7.600e-68
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 1 

		  

Query: 15  ESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS 74
           ESNGSFNPVTDSV EEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS
Sbjct: 116 ESNGSFNPVTDSVHEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGKNSSIDTEVSS 175

Query: 75  AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT 134
           AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT
Sbjct: 176 AAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLLKVLHLRNLPWECT 235

Query: 135 EEELIELGKPF 146
           EEELIELGKPF
Sbjct: 236 EEELIELGKPF 246
[Close]
BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU23_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141470 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.500e-51
Identity = 112/154 (72.73%), Postives = 116/154 (75.32%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFN +         +         VSTAPNANHADHSQSPSHLPGK
Sbjct: 297 GVGENCVVDGESNGSFNLLPIQFTRNLSASFLY-----VSTAPNANHADHSQSPSHLPGK 356

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPG-------------FSWLPRFGASCVMASVSSQ 124
            SSIDTEVSSAAIV KDDQPKQEETLP              FSWLPRFGA+CVMASVSSQ
Sbjct: 357 ISSIDTEVSSAAIVVKDDQPKQEETLPAVGPPFPVVQADPRFSWLPRFGAACVMASVSSQ 416

Query: 125 PQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           PQFRYTQP  KVLHLRNLPWECT+EELIELGKPF
Sbjct: 417 PQFRYTQPPSKVLHLRNLPWECTKEELIELGKPF 445
[Close]
BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU10_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141470 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.500e-51
Identity = 112/154 (72.73%), Postives = 116/154 (75.32%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFN +         +         VSTAPNANHADHSQSPSHLPGK
Sbjct: 303 GVGENCVVDGESNGSFNLLPIQFTRNLSASFLY-----VSTAPNANHADHSQSPSHLPGK 362

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPG-------------FSWLPRFGASCVMASVSSQ 124
            SSIDTEVSSAAIV KDDQPKQEETLP              FSWLPRFGA+CVMASVSSQ
Sbjct: 363 ISSIDTEVSSAAIVVKDDQPKQEETLPAVGPPFPVVQADPRFSWLPRFGAACVMASVSSQ 422

Query: 125 PQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           PQFRYTQP  KVLHLRNLPWECT+EELIELGKPF
Sbjct: 423 PQFRYTQPPSKVLHLRNLPWECTKEELIELGKPF 451
[Close]
BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_128190 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.600e-39
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G GENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK
Sbjct: 45  GVGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 104

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLP 92
           NSSIDTEVSSAAIVAKDDQPKQEETLP
Sbjct: 105 NSSIDTEVSSAAIVAKDDQPKQEETLP 131
[Close]
BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CKL6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g090840 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.100e-21
Identity = 66/117 (56.41%), Postives = 72/117 (61.54%), Query Frame = 1 

		  

Query: 5   GSGENCVVDGESNGSFNPVTDSVDEEPVSELSLCDQDAVSTAPNANHADHSQSPSHLPGK 64
           G  ENC  D ESN  FNP TDS  EE VS+LS CDQD  STAP ANHADH QSPSHLPG+
Sbjct: 340 GVRENC--DRESNADFNPATDSALEETVSKLSSCDQDVASTAPQANHADHPQSPSHLPGR 399

Query: 65  NSSIDTEVSSAAIVAKDDQPKQEETLPGFSWLPRFGASCVMASVSSQPQFRYTQPLL 122
           N  IDTEV S+A   KDD+PKQE        LP  G    + S  S   F Y  P+L
Sbjct: 400 NLPIDTEVISSATNPKDDEPKQET-------LPSVGPPFPVQSAPSY-SFGYVPPML 446
[Close]
BLAST of Spo04981.1 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.700e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 

		  

Query: 105 MASVSSQPQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           M+SVSSQPQFRYTQP  KVLHLRNLPWECTEEELIELGKPF
Sbjct: 1   MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPF 41
[Close]
BLAST of Spo04981.1 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-8
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 

		  

Query: 107 SVSSQPQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           S S Q QFRYTQ   KV+HLRNLPWEC EEELI+L K F
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRF 40
[Close]
BLAST of Spo04981.1 vs. TAIR (Arabidopsis)
Match: AT5G53180.1 (polypyrimidine tract-binding protein 2)

HSP 1 Score: 84.0 bits (206), Expect = 9.300e-17
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 

		  

Query: 105 MASVSSQPQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           M+SVSSQPQFRYTQP  KVLHLRNLPWECTEEELIELGKPF
Sbjct: 1   MSSVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPF 41
[Close]
BLAST of Spo04981.1 vs. TAIR (Arabidopsis)
Match: AT3G01150.1 (polypyrimidine tract-binding protein 1)

HSP 1 Score: 60.5 bits (145), Expect = 1.100e-9
Identity = 28/39 (71.79%), Postives = 30/39 (76.92%), Query Frame = 1 

		  

Query: 107 SVSSQPQFRYTQPLLKVLHLRNLPWECTEEELIELGKPF 146
           S S Q QFRYTQ   KV+HLRNLPWEC EEELI+L K F
Sbjct: 2   SSSGQTQFRYTQTPSKVVHLRNLPWECVEEELIDLCKRF 40
The following BLAST results are available for this feature:
BLAST of Spo04981.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203061|gb|KNA14463.1|1.1e-6799.2hypothetical protein SOVF_1073... [more]
gi|902186649|gb|KNA10749.1|9.3e-5172.7hypothetical protein SOVF_1414... [more]
gi|902186650|gb|KNA10750.1|9.3e-5172.7hypothetical protein SOVF_1414... [more]
gi|902192960|gb|KNA12150.1|3.7e-3998.8hypothetical protein SOVF_1281... [more]
gi|731330342|ref|XP_010676081.1|5.9e-2156.4PREDICTED: uncharacterized pro... [more]
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BLAST of Spo04981.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R4M5_SPIOL7.6e-6899.2Uncharacterized protein (Fragm... [more]
A0A0K9QU23_SPIOL6.5e-5172.7Uncharacterized protein (Fragm... [more]
A0A0K9QU10_SPIOL6.5e-5172.7Uncharacterized protein (Fragm... [more]
A0A0K9QY25_SPIOL2.6e-3998.8Uncharacterized protein (Fragm... [more]
A0A0J8CKL6_BETVU4.1e-2156.4Uncharacterized protein OS=Bet... [more]
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BLAST of Spo04981.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PTBP2_ARATH1.7e-1592.6Polypyrimidine tract-binding p... [more]
PTBP1_ARATH2.0e-871.7Polypyrimidine tract-binding p... [more]
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BLAST of Spo04981.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G53180.19.3e-1792.6polypyrimidine tract-binding p... [more]
AT3G01150.11.1e-971.7polypyrimidine tract-binding p... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 110..145
score: 5.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 111..145
score: 7.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0008360 regulation of cell shape
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009556 microsporogenesis
biological_process GO:0061025 membrane fusion
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0007267 cell-cell signaling
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009616 virus induced gene silencing
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
RNA-Seq Expression