Spo04866 (gene)

Overview
NameSpo04866
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03045 : 16249 .. 18258 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTGCATTTTATCATCTCATCAAAATTCATTCTTTCAAACAATTTTTCTCATTTTCAAGCTTATTTCATTTTAATTCTTTTATTTTCGTATTTTAAGTTCATTCACACAAATGGCCACCGAGGTACATATCCTACAACATTTGTCGTGCTTGTATAATTTGTTGTTCTTCTTTTGTTATTTTGATGATTTTTCGTACAAACTTTGTTAGAGATTTTTGTTGGATGGATTCTTGAAAGAATGTACGTTTCGGCAACGTTTTTGGTACATTGTTTAAAAAATACACGAACTGTTATGCACTTCATCTCTCTCGAGTTTGATGCTAGAAGTTCTGAAAACTGATATATGATCTTTAGAAACTTTTTAGAATTGTATATTCAATGATATGCATGATCTTAGGAAAACTTCACAAGTTGTTCATGTTTTTGCTTCCTTATATAGTTATATGTCAACAAAACAAAGTATGTGTTGATGATCCATAAAATTAAATACAGATGAAACTGATAATTTGATCTGATGTAAGGAATTTCATGACGATCTTCCAGTTTTGCTTGATCATTAAACTGGTATGGAGTTAGATCTCGTCACAACGAGTACATGGTTAAGAATTCATCATGACAAGAAACCATGGTTTGATTGACATATATAACAGTGAAAATAGACATATTCTATGTAGCTAGAGAGTTATATACAGAGTTTAAGGATCCAAAAAGTGTGATAGATCCTTGCATCTTTTTAGATCTATCTATACGCTTTGATCATTCAAAGATGAATTTTAGGTCAAAGGTTTTTTCTTTTTTAATTTTCTTGCACGTTGTATAAGATAATTCTTTTGAAGGTTTTCTGTTTTTAAAGATCAAAATTTGATGATATTTTCTCCTGCAGGTTGCAGCAAGCACTACATTTCCTGAGGCTCAGGCCCCTGTTGAGGTGATCAAGACTGAGGCCCCAACCACAGAAACAGTGGAAGCCGTTGAAACTCCAGCAGCAGCAACAGAGGCTCCAGCTTCAGAGGAAGCACCAGTAGAAGTTGTTGCAGAAGCTGTTGAGGTAGCTGCTGAAACCCCAGCAGAAGCCGAGGCTCCAGCAGTAGAAGCTGAGCCAGAAAAGAAAGCCGAGGCAGAGGCAGTAGCAGAGGTAGAGGCAGTGGCAGAGCCAGCAGTAGAGAAGGAAGAGGAAGCTGCCCCACCTGCTGAAGAAGAGAAACCTGCAGTTGTTGAAGAGACCAGAGAAGTGGCCCCCACTGAAGCACCAGCTGAAGAGGCTACTAAGGCGGAAGAAGAGAAACCCGCTGAAGCACCAGCAGCTGCAGCTGCAGCAGAAGAGACTTCCACTGAGGTTCCAGTTGAGAAGTCTGAAGAGTAAATTTGATCAAAAGTGTCTTTGAAAATTGAGATGGTTTCTTTTTCTCTCAATATTTCTTAGGGTTGCATTCTGGGGTTCATCAGTTTTTTCTTTATTCTATTTACTTAAAAACAGTATTATCATAGCTGCTCATATTATTATTTTTATTTTTATTATTATTATTGGGGTCAAAGCTTTGCTTGGGATTTTTTTGAACATCATTATATATTTCAAAGCTTATTGGGTTATGAGGTACCCTTGCTTATTGGGTTATGTAGGGTACAACCCAGAGAGCGGGAATTTGAGAGTGTGATATACTGTACTGGATTTGGTTATGGAATAATAATGCTATTATAATTTTGAGGTTATCTGTGGAGTTTTCGTTCTTATATTATGAACATTTTCACAATTTAATTGATTTTTGTAGAAAATATATTGTATCATAACAGATAGGAACCAGCTGAGAAAATCAAGCATCACGAACCGTGAAGATAAAAAGAGCTGAACAAAAGTCGAAAAACAAAGTCAAAGAAAGAACCGAGTGTTACAATGCAGGCAGGATGAACGAGAACCACACAACATACCGCAGCCCTTTGTTGTAAGCAGGGTCAAGAAGGTCCAGATTTACACAAGCTTGCCATAAAATCTGGTGGAGGTAGTCTATCT

mRNA sequence

CTCTTGCATTTTATCATCTCATCAAAATTCATTCTTTCAAACAATTTTTCTCATTTTCAAGCTTATTTCATTTTAATTCTTTTATTTTCGTATTTTAAGTTCATTCACACAAATGGCCACCGAGGTTGCAGCAAGCACTACATTTCCTGAGGCTCAGGCCCCTGTTGAGGTGATCAAGACTGAGGCCCCAACCACAGAAACAGTGGAAGCCGTTGAAACTCCAGCAGCAGCAACAGAGGCTCCAGCTTCAGAGGAAGCACCAGTAGAAGTTGTTGCAGAAGCTGTTGAGGTAGCTGCTGAAACCCCAGCAGAAGCCGAGGCTCCAGCAGTAGAAGCTGAGCCAGAAAAGAAAGCCGAGGCAGAGGCAGTAGCAGAGGTAGAGGCAGTGGCAGAGCCAGCAGTAGAGAAGGAAGAGGAAGCTGCCCCACCTGCTGAAGAAGAGAAACCTGCAGTTGTTGAAGAGACCAGAGAAGTGGCCCCCACTGAAGCACCAGCTGAAGAGGCTACTAAGGCGGAAGAAGAGAAACCCGCTGAAGCACCAGCAGCTGCAGCTGCAGCAGAAGAGACTTCCACTGAGGTTCCAGTTGAGAAGTCTGAAGAGTAAATTTGATCAAAAGTGTCTTTGAAAATTGAGATGGTTTCTTTTTCTCTCAATATTTCTTAGGGTTGCATTCTGGGGTTCATCAGTTTTTTCTTTATTCTATTTACTTAAAAACAGTATTATCATAGCTGCTCATATTATTATTTTTATTTTTATTATTATTATTGGGGTCAAAGCTTTGCTTGGGATTTTTTTGAACATCATTATATATTTCAAAGCTTATTGGGTTATGAGGTACCCTTGCTTATTGGGTTATGTAGGGTACAACCCAGAGAGCGGGAATTTGAGAGTGTGATATACTGTACTGGATTTGGTTATGGAATAATAATGCTATTATAATTTTGAGGTTATCTGTGGAGTTTTCGTTCTTATATTATGAACATTTTCACAATTTAATTGATTTTTGTAGAAAATATATTGTATCATAACAGATAGGAACCAGCTGAGAAAATCAAGCATCACGAACCGTGAAGATAAAAAGAGCTGAACAAAAGTCGAAAAACAAAGTCAAAGAAAGAACCGAGTGTTACAATGCAGGCAGGATGAACGAGAACCACACAACATACCGCAGCCCTTTGTTGTAAGCAGGGTCAAGAAGGTCCAGATTTACACAAGCTTGCCATAAAATCTGGTGGAGGTAGTCTATCT

Coding sequence (CDS)

ATGGCCACCGAGGTTGCAGCAAGCACTACATTTCCTGAGGCTCAGGCCCCTGTTGAGGTGATCAAGACTGAGGCCCCAACCACAGAAACAGTGGAAGCCGTTGAAACTCCAGCAGCAGCAACAGAGGCTCCAGCTTCAGAGGAAGCACCAGTAGAAGTTGTTGCAGAAGCTGTTGAGGTAGCTGCTGAAACCCCAGCAGAAGCCGAGGCTCCAGCAGTAGAAGCTGAGCCAGAAAAGAAAGCCGAGGCAGAGGCAGTAGCAGAGGTAGAGGCAGTGGCAGAGCCAGCAGTAGAGAAGGAAGAGGAAGCTGCCCCACCTGCTGAAGAAGAGAAACCTGCAGTTGTTGAAGAGACCAGAGAAGTGGCCCCCACTGAAGCACCAGCTGAAGAGGCTACTAAGGCGGAAGAAGAGAAACCCGCTGAAGCACCAGCAGCTGCAGCTGCAGCAGAAGAGACTTCCACTGAGGTTCCAGTTGAGAAGTCTGAAGAGTAA

Protein sequence

MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEVAAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETREVAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04866.1Spo04866.1mRNA


Homology
[Close]
BLAST of Spo04866.1 vs. NCBI nr
Match: gi|902173436|gb|KNA08263.1| (hypothetical protein SOVF_164190 [Spinacia oleracea])

HSP 1 Score: 247.7 bits (631), Expect = 1.400e-62
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV
Sbjct: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE 120
           AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE
Sbjct: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE 120

Query: 121 VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE 164
           VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE
Sbjct: 121 VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE 163
[Close]
BLAST of Spo04866.1 vs. NCBI nr
Match: gi|731350848|ref|XP_010686722.1| (PREDICTED: fibrous sheath CABYR-binding protein-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.4 bits (363), Expect = 1.700e-31
Identity = 119/166 (71.69%), Postives = 124/166 (74.70%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVA ST  PE QAP+EVIK EAP TETVEA E PAA TEAPA+EE P EV AEA EV
Sbjct: 1   MATEVAQSTPLPETQAPIEVIKAEAPATETVEA-EAPAAVTEAPAAEETPAEVAAEATEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVE-KEEEAAPPAEEEKPAVVEETR 120
           A E P E EAPAVEA PEK    EA  +VE  AEP VE KEEEAAPPA EEK AVVEET 
Sbjct: 61  AVEAPVETEAPAVEAAPEK----EAAPQVE--AEPVVEKKEEEAAPPAIEEKKAVVEETS 120

Query: 121 EVAPTE---APAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSE 163
           E APTE   APAEEA+K EE KP E P  A AAEETSTEVPVEKS+
Sbjct: 121 EAAPTEAAAAPAEEASKVEEVKPTEEP--AVAAEETSTEVPVEKSD 157
[Close]
BLAST of Spo04866.1 vs. NCBI nr
Match: gi|11691639|emb|CAC18641.1| (RS2 protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 143.3 bits (360), Expect = 3.800e-31
Identity = 118/166 (71.08%), Postives = 124/166 (74.70%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVA ST  PE QAP+EVIK EAP TETVEA E PAA TEAPA+EE P EV AEA EV
Sbjct: 1   MATEVAQSTPLPETQAPIEVIKAEAPATETVEA-EAPAAVTEAPAAEETPAEVAAEATEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVE-KEEEAAPPAEEEKPAVVEETR 120
           A E P E EAPAVEA PEK    EA  +VE  AEP VE KEEEAAPPA EEK AVVEET 
Sbjct: 61  AVEAPVETEAPAVEAAPEK----EAAPQVE--AEPVVEKKEEEAAPPAIEEKKAVVEETS 120

Query: 121 EVAPTE---APAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSE 163
           E APTE   APAEEA+K EE KP E P  A AAEETST+VPVEKS+
Sbjct: 121 EAAPTEAAAAPAEEASKVEEVKPTEEP--AVAAEETSTDVPVEKSD 157
[Close]
BLAST of Spo04866.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNI8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_164190 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 9.900e-63
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV
Sbjct: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE 120
           AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE
Sbjct: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVEKEEEAAPPAEEEKPAVVEETRE 120

Query: 121 VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE 164
           VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE
Sbjct: 121 VAPTEAPAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSEE 163
[Close]
BLAST of Spo04866.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BW28_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g185040 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.200e-31
Identity = 119/166 (71.69%), Postives = 124/166 (74.70%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVA ST  PE QAP+EVIK EAP TETVEA E PAA TEAPA+EE P EV AEA EV
Sbjct: 1   MATEVAQSTPLPETQAPIEVIKAEAPATETVEA-EAPAAVTEAPAAEETPAEVAAEATEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVE-KEEEAAPPAEEEKPAVVEETR 120
           A E P E EAPAVEA PEK    EA  +VE  AEP VE KEEEAAPPA EEK AVVEET 
Sbjct: 61  AVEAPVETEAPAVEAAPEK----EAAPQVE--AEPVVEKKEEEAAPPAIEEKKAVVEETS 120

Query: 121 EVAPTE---APAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSE 163
           E APTE   APAEEA+K EE KP E P  A AAEETSTEVPVEKS+
Sbjct: 121 EAAPTEAAAAPAEEASKVEEVKPTEEP--AVAAEETSTEVPVEKSD 157
[Close]
BLAST of Spo04866.1 vs. UniProtKB/TrEMBL
Match: Q9FNT2_BETVU (RS2 protein OS=Beta vulgaris subsp. vulgaris GN=Rs2 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.600e-31
Identity = 118/166 (71.08%), Postives = 124/166 (74.70%), Query Frame = 1 

		  

Query: 1   MATEVAASTTFPEAQAPVEVIKTEAPTTETVEAVETPAAATEAPASEEAPVEVVAEAVEV 60
           MATEVA ST  PE QAP+EVIK EAP TETVEA E PAA TEAPA+EE P EV AEA EV
Sbjct: 1   MATEVAQSTPLPETQAPIEVIKAEAPATETVEA-EAPAAVTEAPAAEETPAEVAAEATEV 60

Query: 61  AAETPAEAEAPAVEAEPEKKAEAEAVAEVEAVAEPAVE-KEEEAAPPAEEEKPAVVEETR 120
           A E P E EAPAVEA PEK    EA  +VE  AEP VE KEEEAAPPA EEK AVVEET 
Sbjct: 61  AVEAPVETEAPAVEAAPEK----EAAPQVE--AEPVVEKKEEEAAPPAIEEKKAVVEETS 120

Query: 121 EVAPTE---APAEEATKAEEEKPAEAPAAAAAAEETSTEVPVEKSE 163
           E APTE   APAEEA+K EE KP E P  A AAEETST+VPVEKS+
Sbjct: 121 EAAPTEAAAAPAEEASKVEEVKPTEEP--AVAAEETSTDVPVEKSD 157
The following BLAST results are available for this feature:
BLAST of Spo04866.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902173436|gb|KNA08263.1|1.4e-62100.hypothetical protein SOVF_1641... [more]
gi|731350848|ref|XP_010686722.1|1.7e-3171.6PREDICTED: fibrous sheath CABY... [more]
gi|11691639|emb|CAC18641.1|3.8e-3171.0RS2 protein [Beta vulgaris sub... [more]
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BLAST of Spo04866.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QNI8_SPIOL9.9e-63100.Uncharacterized protein OS=Spi... [more]
A0A0J8BW28_BETVU1.2e-3171.6Uncharacterized protein OS=Bet... [more]
Q9FNT2_BETVU2.6e-3171.0RS2 protein OS=Beta vulgaris s... [more]
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BLAST of Spo04866.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04866.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo233390.66Barchart | Table
Spo249820.66Barchart | Table