Spo04651 (gene)

Overview
NameSpo04651
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionProbable bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic (OsRIBA1) (3,4-dihydroxy-2-butanone 4-phosphate synthase) (DHBP synthase) (4.1.99.12) (GTP cyclohydrolase-2) (3.5.4.25) (GTP cyclohydrolase II) (Precursor)
LocationSpoScf_02425 : 18880 .. 20151 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCAGCTTCGCGAATAACACCTGAAGCTATAGACTTTTTAATGAACCGAGGATCTGGGATCATCTATGTGACAGTTGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGGTAAGAAGTAANGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGGTAAGAAGTAAACCTGGATATACTTAGTTACATAAACAATAAACAATATGCCAGTATTGAATATTTTTTCTGTGCATCAATCTAAAGCGAAACTAGATAACTAGACTGTAAGAACATTAACTCAAATCCCTTANATCATCTATGTGACAGTTGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGGTAAGAACTAAACCTGGATATACTTAGTTACATAAACAATAAACAATATGCCAGTATTGAATATTTTTTCTGTGCATCAATCTAAAGCGAAACTAGATAACTAGACTGTAAGAACATTAACTCAAATCCCTTTNCTGTGCATCAATCTAAAGCGAAACTAGATAACTAGACTGTAAGAACATTAACTCAAATCCCTTAAATAGGGAGGTAAAGATAATAAATCTTCTTTTGTCTCTACTCTATGTCGATGTATCTAAAATGAGAATCTGATTCTAATGTGCTTTATTTTGTTCTTGTTCTTTTTCTGATTGAATGGTGCCAACACTTTTCAGTTTGCAATTGTTGAAATCAGTCTAAGGACATGAATTTATGAGGTAATCTAGGATTTGAACCATTACCTTGCCAGGAAATTACATTGAAATTGACTGCGGATATTATGTGATGAGATTCATTAAGCAGATAATCTCACACAAGCGACTTCAAATTCCTGAAGTTGTAATCTAATCTTAATCTATGGAGTAAATGTTAATTATATATGTTTAATTACCAATAATTCCAGTTAGACTGTTATAGCTGAATAGTTTTTTTTTTGGCAACCATCTCAGCTAGTCTGCCATGAATTTCAGCTAGTCTTCCATGACTGTGGTATGCCAAGAATTTAGTTGTCTTGTGGTAGGCCAAGTTTGCAGATGTCTTCTAGTCCATTGATGTGACATATAGGCCAAACTTGCAGAGGTCTTCTAGTCCGTTGATGTCTTACATATGTGCAGCCAAGATGTTTTTAGTTGAGTTTTCTTCTAAGATTTTCCACACTAATTGAGCGTTCCACGAACCATCAGCCTTTTAAGGTGCTTTACTTTCAGATCCTTTGCAAAATTACCCACCCCCCGTCAGCAAGCATATACCCCCT

mRNA sequence

ATGGTGGCAGCTTCGCGAATAACACCTGAAGCTATAGACTTTTTAATGAACCGAGGATCTGGGATCATCTATGTGACAGTTGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGGTAAGAAGTAANGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGCTAGTCTGCCATGAATTTCAGCTAGTCTTCCATGACTGTGAGGTCTTCTAGTCCGTTGATGTCTTACATATGTGCAGCCAAGATGTTTTTAGTTGAGTTTTCTTCTAAGATTTTCCACACTAATTGAGCGTTCCACGAACCATCAGCCTTTTAAGGTGCTTTACTTTCAGATCCTTTGCAAAATTACCCACCCCCCGTCAGCAAGCATATACCCCCT

Coding sequence (CDS)

ATGGTGGCAGCTTCGCGAATAACACCTGAAGCTATAGACTTTTTAATGAACCGAGGATCTGGGATCATCTATGTGACAGTTGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGGTAAGAAGTAANGAAGGGGGAGGCTTGGAGAAACTGCAGTCCCCTTTTATGCTAGTCTGCCATGAATTTCAGCTAGTCTTCCATGACTGTGAGGTCTTCTAG

Protein sequence

MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFMVRSXEGGGLEKLQSPFMLVCHEFQLVFHDCEVF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04651.1Spo04651.1mRNA


Homology
[Close]
BLAST of Spo04651.1 vs. NCBI nr
Match: gi|902224858|gb|KNA19904.1| (hypothetical protein SOVF_056800 isoform A [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 6.100e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
          MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 40
[Close]
BLAST of Spo04651.1 vs. NCBI nr
Match: gi|902224859|gb|KNA19905.1| (hypothetical protein SOVF_056800 isoform B [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 6.100e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
          MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 40
[Close]
BLAST of Spo04651.1 vs. NCBI nr
Match: gi|902214081|gb|KNA17415.1| (hypothetical protein SOVF_080340 [Spinacia oleracea])

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1   MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
           MVAAS+ITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 77  MVAASQITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 116
[Close]
BLAST of Spo04651.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLV5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056800 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
          MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 40
[Close]
BLAST of Spo04651.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK85_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056800 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.200e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
          MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 1  MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 40
[Close]
BLAST of Spo04651.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD68_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080340 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-12
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 1   MVAASRITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 41
           MVAAS+ITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM
Sbjct: 77  MVAASQITPEAIDFLMNRGSGIIYVTVEGGGLEKLQSPFM 116
The following BLAST results are available for this feature:
BLAST of Spo04651.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902224858|gb|KNA19904.1|6.1e-13100.hypothetical protein SOVF_0568... [more]
gi|902224859|gb|KNA19905.1|6.1e-13100.hypothetical protein SOVF_0568... [more]
gi|902214081|gb|KNA17415.1|1.8e-1297.5hypothetical protein SOVF_0803... [more]
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BLAST of Spo04651.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RLV5_SPIOL4.2e-13100.Uncharacterized protein OS=Spi... [more]
A0A0K9RK85_SPIOL4.2e-13100.Uncharacterized protein OS=Spi... [more]
A0A0K9RD68_SPIOL1.2e-1297.5Uncharacterized protein OS=Spi... [more]
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BLAST of Spo04651.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04651.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0004223,4-dihydroxy-2-butanone 4-phosphate synthase, RibBPFAMPF00926DHBP_synthasecoord: 2..45
score: 1.
IPR017945DHBP synthase RibB-like alpha/beta domainGENE3D3.90.870.10coord: 2..42
score: 7.
IPR017945DHBP synthase RibB-like alpha/beta domainunknownSSF55821YrdC/RibBcoord: 2..45
score: 1.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009231 riboflavin biosynthetic process
molecular_function GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo132170.65Barchart | Table