Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGTATGTAAAGTTTCAATGCATTTGTAACCAATTAAAATTTAATATTAAAAGGGTTATCAACCCTTAGGATCACTCTATCATTATCCCAATAATTTATGTGTTTTTGACTTCACAATCACATGAACTCCCCCTTAAACCAACCAACCCTCCACTAATTCACCATTTTCTCTCTCCTCACCCACCCAAACACTAGCTACCTTTTCCCCCTTTTGTCTTCACATCCCACCATTTTTAGTCCAAATTTTTTTCTGGGATTTGAAGGAAAATAATGTTTGATTTGGGAGATGATATAATTCTGGACAACAACAACATTCCATGGCTAATTTGGATTCAGATTTTGGTCATGTTTTTGCTAACCCTCACCATTTTGCTCTCTTACTTTGGTTACTTTGTTCTTGATTCTTCTTCTACAAGCAGTTCTTCTGTTTCGAAGACTTCTTCTAGCTGCAATCCAAGTGCCCAGGTGTGGATTTCATCTGCATTCTTTGTTTTCTTGTTCTGGGTTTCTCTCCTTGTTGATTTTTTTTATTAGTTTTTGAAATTGAGAATTTATATATGCTTAATTATGCTGATTTTAATGGGTTTTCATGATTGATTTTTAAGTCCCGAGCTTGAACGAATTAGTTAATTTAATTAGGTGAGAACAAATGAACAAGCAGGGTATTTTCCGTTTTGATTCATCAATCTTAAAAACCAGCAAAGTTGGGCTATAGTTTGACTTGTGATTGAGGCTAATTACTGACCCATTCTCCATAATAGTCTGAATTGAGTGTTTGTAGAATGTTGGTATTTGTTGGGGAACGGGAGAAAAGTGGAGATAAACTTATAAATTGACTAATCTTCCACCATCATAAGGTTGTTGCTGTGTTAATGAGGGTTTCGTTTTCGTGATCTTAATGGAACAATGGTAAAATCTGGACCATCTGGTTGATAAGGTGGTTTGTCGGTTCTTCTGGATTTGTAAGATAAAAAAAACTTTCTTAAGCAAATTTTGTGTGTTGATTTAGAGTGAATAAGATATAATCTCAGGTTGCTCATATGATATTGTTGTAAATAGAGTGGATAAGATTCAATATGATCTCAATATAATCCTGACATTTAATTATCTGAAGCCGTCTGTTTCCTTCTTTTGGTCCCCTTAGTTATACGAAATACTCCGTATGTCTTAAAGTATATGGAGTAAGGGGTAACTTATAGTAGAATTTATAGAACTGATAGAAAAGGATGGAAAGAAATCTGAGAGCCTGGAAAGTTGTTTTTGGCACTTTGTCCATTATGTACACTGTCAAATACGAGAAGTCGAGAACCGCCTTATCAGGTTGGCAAATTAAGTCTTGCTTCACACAATCACACTGGAGATAAATAAAACTTGGCCAACCTAATCTTGAAAGTGATCCTCTTAGCTGTCTTTCAAACAACGAGCACATTAGTGTTTCCATTAGGCTCTTTCATGTGAATTTGTGGACATGTTTTCTATGAAGCCAAATCCTACCACTTCAACTTTGCTACAGTGATGAATATACTTGTTAAAGTTTCCCGGAGGTATCTACAATTTGACTTACAATTGATTGGAAAATCTAGAGCCTCTTTGCAATTGCGTGGATAAGCCCGTGTGGAAATAAATAACAATCTTCCTTACTCTGCCCTGGTTGGCAGCTTTTGTAGAGGTGTTGGGATAACTAGATGATCTAAAATTTCCTGTTTGTCAACCGGAAAAAAAAGAGAAGAGAAAGGACAGATAATCTGATACTCAGGTTGGATTTTAAACTGGAAGTGATTATCGTGAAACAAGTTTGGGAAACTATATGGGTGAAAGAGAGCATATTCTATCTGGCAGACTGAATTAGAGCAACTCCAATGGTTGCTTCTAGGGACTTGATTGCAATTTCCAAAACTTTCAAGCAAGTAGCTAAACCATTGGAGCAGTTTTGTTAAATTAGCTAGACAAAGCAAATTAGCTCTACCAAGCTAATTAGCTTGGAAAAAAACAACTTTTTTTTCTAATTATTAAGAATGTAAACGTAAGAATAGAATAAAAAAAATTAAAAAAAAGAAGTTAAACAAAAATCAAGCTACTTGCTAACCATTGGAGCATGTTATAGCTAGAAAATGTTGTTGCTTGAAAAATTAATGTGGCATACCAAGCTACAATGATATTAGCTAACCATTAAAGATGCTCTTAGAGTAATAAGTCGACATGTTCTAGAAGTTGGTTGAGTAACTGATAATACATCCATTTGATCCATACATCTAAAAAGTTAGTGCTCTGTACTGATATTTCGCCAAACAAATTGTATAGTCCCACTATGAAGGTTGATTGGGAAGGGAAAATACAAGCTTCATTAATTTAATTTATAAAAGTCATAAATTAATAATCAACATAATTTCCTTGTTGGTTCAGATATCTGAATCTATGTAAATTTGATTGGAACTGATATTACATACTTGAATACAAGGGTGCATGTATTAAACAATTAGTTATATTAGCAGGTAGCTGATAACCATGATGCGAGGAGGGAAATAACTACTACGACATCTAGCAACAGAGTGAGGTGTGTAGGGGAAAGGGATGGCTCTTCCATGAAGGATGTAGCTTCTTCCTCAGTTGCAGCACGTTTCTTCCACCCATGCCGTTATTTTGATTTTGCTAAAGAAGCTTTCCTCAAATGTCTAGGTTTGGATTCAGAATCTCCTGACGAAGAACACAAACATGAAGACTGA TTGTATGTAAAGTTTCAATGCATTTGTAACCAATTAAAATTTAATATTAAAAGGGTTATCAACCCTTAGGATCACTCTATCATTATCCCAATAATTTATGTGTTTTTGACTTCACAATCACATGAACTCCCCCTTAAACCAACCAACCCTCCACTAATTCACCATTTTCTCTCTCCTCACCCACCCAAACACTAGCTACCTTTTCCCCCTTTTGTCTTCACATCCCACCATTTTTAGTCCAAATTTTTTTCTGGGATTTGAAGGAAAATAATGTTTGATTTGGGAGATGATATAATTCTGGACAACAACAACATTCCATGGCTAATTTGGATTCAGATTTTGGTCATGTTTTTGCTAACCCTCACCATTTTGCTCTCTTACTTTGGTTACTTTGTTCTTGATTCTTCTTCTACAAGCAGTTCTTCTGTTTCGAAGACTTCTTCTAGCTGCAATCCAAGTGCCCAGGTAGCTGATAACCATGATGCGAGGAGGGAAATAACTACTACGACATCTAGCAACAGAGTGAGGTGTGTAGGGGAAAGGGATGGCTCTTCCATGAAGGATGTAGCTTCTTCCTCAGTTGCAGCACGTTTCTTCCACCCATGCCGTTATTTTGATTTTGCTAAAGAAGCTTTCCTCAAATGTCTAGGTTTGGATTCAGAATCTCCTGACGAAGAACACAAACATGAAGACTGA ATGTTTGATTTGGGAGATGATATAATTCTGGACAACAACAACATTCCATGGCTAATTTGGATTCAGATTTTGGTCATGTTTTTGCTAACCCTCACCATTTTGCTCTCTTACTTTGGTTACTTTGTTCTTGATTCTTCTTCTACAAGCAGTTCTTCTGTTTCGAAGACTTCTTCTAGCTGCAATCCAAGTGCCCAGGTAGCTGATAACCATGATGCGAGGAGGGAAATAACTACTACGACATCTAGCAACAGAGTGAGGTGTGTAGGGGAAAGGGATGGCTCTTCCATGAAGGATGTAGCTTCTTCCTCAGTTGCAGCACGTTTCTTCCACCCATGCCGTTATTTTGATTTTGCTAAAGAAGCTTTCCTCAAATGTCTAGGTTTGGATTCAGAATCTCCTGACGAAGAACACAAACATGAAGACTGA MFDLGDDIILDNNNIPWLIWIQILVMFLLTLTILLSYFGYFVLDSSSTSSSSVSKTSSSCNPSAQVADNHDARREITTTTSSNRVRCVGERDGSSMKDVASSSVAARFFHPCRYFDFAKEAFLKCLGLDSESPDEEHKHED Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04554.1 vs. NCBI nr
Match: gi|902202920|gb|KNA14421.1| (hypothetical protein SOVF_107560 [Spinacia oleracea]) HSP 1 Score: 271.2 bits (692), Expect = 1.000e-69 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
BLAST of Spo04554.1 vs. NCBI nr
Match: gi|731339873|ref|XP_010681092.1| (PREDICTED: uncharacterized protein LOC104896089 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 153.3 bits (386), Expect = 3.200e-34 Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 1
BLAST of Spo04554.1 vs. NCBI nr
Match: gi|731339871|ref|XP_010681091.1| (PREDICTED: uncharacterized protein LOC104896089 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 144.4 bits (363), Expect = 1.500e-31 Identity = 92/162 (56.79%), Postives = 107/162 (66.05%), Query Frame = 1
BLAST of Spo04554.1 vs. NCBI nr
Match: gi|870857082|gb|KMT08658.1| (hypothetical protein BVRB_6g139350 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 114.8 bits (286), Expect = 1.200e-22 Identity = 77/143 (53.85%), Postives = 91/143 (63.64%), Query Frame = 1
BLAST of Spo04554.1 vs. NCBI nr
Match: gi|970023133|ref|XP_015072902.1| (PREDICTED: uncharacterized protein LOC107017144 [Solanum pennellii]) HSP 1 Score: 89.7 bits (221), Expect = 4.300e-15 Identity = 63/150 (42.00%), Postives = 84/150 (56.00%), Query Frame = 1
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4J4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_107560 PE=4 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 7.300e-70 Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C9I6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g139350 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 8.700e-23 Identity = 77/143 (53.85%), Postives = 91/143 (63.64%), Query Frame = 1
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HHU3_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 2.100e-13 Identity = 59/142 (41.55%), Postives = 79/142 (55.63%), Query Frame = 1
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Match: A0A0B0N2S6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_32447 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 6.300e-13 Identity = 62/143 (43.36%), Postives = 79/143 (55.24%), Query Frame = 1
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Match: M1AZK3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012958 PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 8.200e-13 Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1
BLAST of Spo04554.1 vs. TAIR (Arabidopsis)
Match: AT5G64880.1 (unknown protein) HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10 Identity = 58/165 (35.15%), Postives = 79/165 (47.88%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04554.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04554.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04554.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo04554.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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