Spo04486 (gene)

Overview
NameSpo04486
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSmall nuclear ribonucleoprotein
Locationchr3 : 3447709 .. 3455235 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGTTTATAATCACGTAGGTAGTACTATTTATAAATGGTTAAAAAAAAACTGCATCAGCTAGGGGTCGAACCCACGACCTTTTGGTTAGGAAATAAACACTCTATCCGCTGAGCTACAGACACTAATGTTGATAAGTTAAATTTAGAAATGTTTATAATTAATATTAATAAATGGTTAAAAAGAAATAAACTCATCAGGTAGGATTCGAACCCACAACCTCCTACGTAAACACACTCTATCCACTGAGCTACAGACACAATTGATGTCATAAGAGGTTACTTCTAAATTATATTTCTATTTAAACTGTAATTCATGTTAAAAATAATTTACAATTAAGTAAACCGCCATCTGAGATAGCGGTTTTGTTTTAATACAAACCGCTATCTGAGATAGCGGTTTATAACATTGAACCGCCATCTGAGATGGCGGTTTGCTTTAAAACGAAACCGCTATCTCATATAGCGGTTCAATGCTGAACCGGAAAAAAAAATTTACTTCTCTTTCTCCCTTGCTTACGTGGACGGTATGGTGGGAAATAACTTAAAAAGTAACGTATTTAGGGAATTGTTGGATCTTTATGCAATATTGAAGGAAATCGCTCTAAGCCCAAAACACAAAGCCCAAATAAACTAGAAAACCCAAAAGTCCTCTCTGTCGAGTGTCTTCTCTGAGTTTCTGCTACTCTTCTCGGCTTCATCTCACTGTCTCCTTTTCGTCACGGCTTCAAGCTTCTCATCTCATTCTTCACGGCTCCTTCTCCGATTATTTTCCCGGCTTAAAGATTCAAGGTACGAAATTACGAATCTGATACTCTTCATTTTGGTTTAATTTTGTATTTGTTTGCTTTCATTTTGGTGGATTTATTATTCGAAAATTCTACTCGACTATTTTTCTATTTTTGCAATTATCTGTTCGACTTATGGTTCGATTTTTTATTTGTTATCGACTTAGTCTACTTAATTTGGTGATATTTACTGAATTAATTGGTCATATTTGCTCGAATTAATTGGTGATTTCTGCTCGAATTAATTGATTATTTCTGCTCGAATTAATTGGTGATATTTGCTCGAATTAATTGGTGATTTTTTCTCGTATTAATTGATGATTTCTGCTCAAATTAATTGGTGATTTTTGCTTTCATGCGATTCAAGAATAATATTTGTTGCCTGGTCAAAATCTTTTAGGATCCCCTGAATGTCGATCACAATATTCAGACAAAGATGCCTAAATTTACAAGTACTAAAGCCAACTTGAAAGGAATTTAGCTACTAATTCAGGTATCTTGCAAACTCACCACTATGTTGGTCTTTTAATTGGCTTTGTTTTGGTGTTGTTTATGTCTAATATTCTATAAGCAGTTCATAATTGTAGTTAATTTTCAAGTTATTTTGATTAAATATTATGTTTTGGGTTTAATTTGGTGTTTTTTTAAAGAACGAACGAGTAGAAAAAAGAATTAACTTAAGGGAATAACAATGTTTAGTTTGATTGAACTCATTTTTTATACGGGGCAGTACATAATTATGAGTTTGATTGAATAAGATTTTGAGCAGATGAATTTTGGAGCTTGTGTAATGGGGTAGGTGGTGGCGATTTTGTTCATGAGAAGATAGTGTTACTAGGCTAGGATCAACCCTGAATGCCTGAGAAGGTTGATGATTATAGGCCTCAATACCATTGAACTTCTTCAAGTCTTCAACCGTTCAGCCTACTTCCCGGCCTACTTCAACCAATTTTATGTTAGGATGTAAAACTATGAAAATATTTTCTCCCTGGTCCAGGGCAGTCGCCTCCTTTCATGGTCAGGTTTCATAATTTGCCAAATGAAGCGGGATATTTGCCACATTGTAAATAGTACAAAGTGTGTATTTCTCATTGTTCGAACTTGTTCGTATTTTCGGGCCAATAGAGTAACCACTTTCGGGCCAATTGAGTAGTTTTACCGAGGCAAGAAATGACAAGACTCCACTATAATGGGTACAAACTTGAGTTTCTTTCACTTAAATTTTTCTTTCTCTGTGACTCTGTCCCACTTTGATATGCCACATCTCTATTTTAGTATGTCCCAAAATAATAAGCCAGTTTTCATATAATCTCCAATGGCAAGCTAATTTGACAATTAGCTTGTTATGCCACATAAGATTTCAAGCTATTTCATTTTGTAGCTAATTTGCTCCATTGGCTAGCAACTAGCTTGTATTTAAATTGGTCCCACTTGTCAATTAATTATTTGACAACTTTTGGGAGCTAGTTGTCAAGCTTATTTGATTGGCCAAGCTAATTTATTATTTTAACTCCAATGGTCTAGCTATTAACTTGAACTTTTTTTATAGCTCAAGCTAGTCCCTAAGCTAGTCCATTGGAGATGCTCTAAGCTAATTATGAATTTTCCGGTATTACTTTTACTTTGTTTAGGATATGATTCTAAGCATCATAATAAGATGCTTGTTTTCAACAATTATTCTTTGTATAATTACGGCATTTTGATCAAATTCCTTGAAGATTACCTAAATCCAAATGTGGCCTGTTAAACTTGGTTGGCGGGAGTAGCTGTTATATGTAATATGAGTACATCTTGATGGAGTATAGAAGTGAACTACGTTTGATTTTTTGCATTCTGCTAATTGGTTGTTCTAAGGGTCTATTACTCTTCTATAGTATCCATCCTTTTTCTTCTTACTCGGACAATTCATTACTCTTTGCGTCCATGACCTAAGCTTCAGAGGTAACACAATTTTAGCAGATGACTGCAGTACGATTTTAGAAGGATGATGAGTGTGTTATCTTCCCAATTATATAATCTACAACGTTATCTTTGCGATGACTGCTGGCTGACCATGGGAATCGAGGAGTGCATCATTATCCTGATAGATTTCGGAGGTTTCAGCATCATGTAGGAAGTTAAGTATTACAGGGATATCGTGTGTTTTTCCCGTTGGAAATGTTAATGGCCAACATTTTCAACTTTTTTTTCTTAGTCTTTGCTAAGCCATTCTAGTTTATGTGTAGGGGTTTCTTATTTTTTATGCAAGCGTCAATATTTTTTGTTTCACTGTCTTTAAAACTTGTATATAATACAGATTTTATATGAATTGAAGAGAACTGGTAATTGAACTTGTTGTCATCCCGAAATTATATTCACATATTTGTGTTTTTTTTGGCAACCGTATTTGATTTTTTTCTTTCCGTATGCCTACATGATGTTTCTCTAGTATGTGATCATTGTTGATCCTATCTGATCTGTCCTGCAGTGTATTTTAAGAAAGTTTGACCTCATTGTTGGCCGCGGGAGTTTGTACAATGGCTACCGGACCTGGACTTGAGCCTCTTGTAGACCGTAAGTGCTCTATATTTGCATGTATGCTTTATATTGCAGTTTCAGTTCCCAGATTTGCATGAGGATGTGTCTCTTCGAGTGACAGCAGGGCTATAAAATTTATTTAAATAGTTTCTTTTGTAAGATTGATACTGACTGTCCCAACTATGGCCCTTTCACTTTAAAAGCTCCCAACTTTTGATTATTCTAGAGTGGTCTCAAATTTGAGGTGTATTTTCCCAGAATGGTCCTTTAGCTTAATTAAACTGTTAATTAAGTTGATTTAACCATATCATACTATTCCATTAACTTCATTTAATTAAAAAATATGATTATTGCACGAGAGATACGAGTCTTAATTAAGTTATATAGCACTTAATAAACTAAGGGACCATTTTTGGAAAGGACTCTCTATAGTTGGGACCACTTTGAGATAATCAAAAGTTGCGACCTTTTAAAGTAAATCGGCCATAGTTGGGACTGATAATATCGATTTTCCCTAGTTTCATTTATAAGATTGTTGTCTGAAAGCTAGCGAAGTTGACATGGCCTTTGCTTACAATCTTTCTTTTTCTCACCTCCCCCCTTGCAGAGATGATTTCAGTTATTACCAATGATGGACGCAATATAGTGGTTAGTTTGCAAGATACCTGAATTAGTAGCTAAATTCTTTTCAAGTTGGCTTTAGTACTTGTGAATTTACTCATTTAGGCATCTTTGTCTGAATATTGTGATCGATTTTCATTCAGGGGATCCTAAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAATCGCATGAAAGGGTTTTTTCTACCAAGGTTTGGCTTATATCACTCCGTAGTTCTCTCTCTCTCTATCCCCCTTTTTTTATCAAAAAAACTAAAAAATATAGGAAAAATTACTTTAAATAATCCAACATTTTGACGATTTTTCATTAATAATTCAACCTTTGACTTATTATCTAATAATCCGACCTTTGCACCCCATTAATTTTTATTGCACCCAACCGGTCACCTACATAATACATCAGGTCACCTATACACGTGTCATGCAACTATTTGTCATAATTTATTTTATTTTTTAACATTAATAATTTCTTTTTACTTTTTCTTTCCTTCCTCCTTCCTCATCTCTGTCCTTACTCTAATCCCACATCCCCTCTTTTTTCTCTATCCTCCACCACCAGCCTTACTCACTCCCACCACCATTGTCGTCATCATCATTTGATCATCAAAATAAACCACAATAAAATTAATTTTATGCACTATTCAGTCACTTACATTTTCTGTCCCTTCTTTTCTCACCCACATCTACATCAGCAGAAATAGTTTACAACAGAAACCCAAAGCAGCAACAACAACTAGTATCCACTTTCGTCATTGCCGCAACAACCACCAACAAGGACGACCTTCAAGAACCACCACCGCTGCCGACCAACTCCTCCAACTCACCCAAATTATATAACCTATTTATTCCTTAATTTAATGTGCTTGAATGTAAATTTGGATTTAATTTCCAAATTGTTAAAAAAAAGTTGGGAAAGTATTAATTTGATCGAAATTAAACAATAAATACTTAAATTCATGCCTGATGCGAACATAATTGTTCAAATTTTGCCACAAATTATTTGAACAAGAACTTTAATTTTTTTTCTTCCCCCAATTTGATTTTCTTGGGGCTTATGCGAATCTAGACATTTGGTAGTAATTTGTTGCCTTGCGTGAATCTGGGCTTCGAGTATTTGAATCGACGATGACCGTTCGAAAAGCCGCAGGTGATGGCTGACTGGCTGGCATGGATCAGTGAAGAAGGTGGCCAAAATTCATTTGGGGAAGACAAAGGAAAGAAACGAGAAAAGAGGGAGGAGTTTAATATTTTTAAAAACAAAAAAAACAATTATGTTGTATTTCTAAAAGCTTTTTAGTTTTTTTTTTAAAAATAAAATAAGAGGGTGACCTTGTTAACAGGTAAACGGTCATTTGGGTGTAATAAAAGTTAATGAGGTTCAAAGGTTAGATTATTCGATAATAATCGAAAGGTTGGATTATTAATGGAAAATCGTCGAAATGATGGATTATTTAAAGTAATTTTCCCAAAAAATATATTAATATGTTTTGGTATGGAATGGCATGCGACAGAACAGGCTTTACATACATGAAAATACTTAATCTTTTGGCAATGGAATTATGCAGGGTCTTTATCTGTTTTTTTTTTCTGCCTAATAAATCAAACATTGTAATGTTCACTATAAGCAATTTCAGGGAAAAGTTGGTTTACCGTTGGAACTTGAGTTCCTTGTTACCACTTTGAGATGAAGGCTGAAACCATAATAAATATACTTATATACATGTTATATTCTTTGTAATTCGATCTCAGTCTACTCAATCACTTGATCTTATGACCGATTTGTTTCCAACAAGTTAGCAGTAACGAGGAACATAATGCAGAAAGATAAGAGCTCGTTATTGATCTATGTAGCAAGCCCTATTATTTTAACGATGTTCATTTATTCTTTTATGTATTGCACTCTTGTGTAAAAGTGTTCATCTCTTAAAGTATATATCACGAGAACAAGAAATTGTGGCATGTTACGTTGTTTAATGCTTCCAGCTCTTAAATTTTTTGCATTCGGAGTGCAGGAAAGTTATTGGAGGGTTATATTATCTATCACCGTAACCCAGTAGGATAAGTGTTAATCGTCTCAGCACGATACTGTTCAAGCCACTGTACATAGGTAGCTATTTATGGTGTGTTCTATTCACCTGGTTTTAACTTATTTTTCCTGAACTATCTGAAATGAACTTATCAGAATTTATCAAAACTTATTTTAGCTATAGCCTTATTTGAGAAGTTAAGTCTTTTTTGTTATTTATTGCTTTTATGTCGACCAAAAGTAAGTATGTGGTTTGGATCCATTCAAGGCGCCCCTGTCTGTGGGGTTGAGGAATGAAATTGATGTTGTTGTAACTTGTAAGTGCATGAAATCTCCTATTATTGCCGTATTTATGTTAAATCTTTCTCTGTTTTAGACTTTAGAGTGTATTCTGAAATAGTTATTTGCTCGGTTGCAGGAAGGAGTCCAACAGATTGTATTGGGTTTGTACATCATCAGGGGTGACAACATGTATGCTATCTTTTCTTAAAGTATTTTATTTTTATTTTTATTCTTATGCAATTGTTTTTGTAGTATAATTATATTAGACCTGATCAAAACGTGGGCCGGGCCAAGGGCATAGAAATCTGCCCATTATGTCAGGCCGGGCCAACTTCGGGCCAATTTTTTGTACCAAAACCCCGCTATTTCGGGGCAAACATATCATCAGGCTTCCAGGCCAGGCCAAAATTACACTAAAATTGTTGTTTTATATTGTCCAAAGCCTGCATTTTTTTAACCCAAAACCCGATAATTTTCGGGCCGGGCCCATGTTGACCAGCTCTAGATTATATGATATCGTAATTTATCCTGTTGTTGTCGTTTGGCATTTACAGAAGCATTATTGGTGAGCTGGATGAAAACTTAGATGCTGATATTGAGCTTTCGCGGTTGAGGGGCAATCCTCTGAAGCCTGTCATTCACTGATCCAAAGTTCTCGGGGTAGAAGTGTGATATCAGTGAACATCTACAATAGGAGTTTTTGGATGGATGAGGCTTTATGCTGAAAGACAGCTTCAAAACTAAAGCAGATTAGACGCGACATTTAACTATGAACTAGTGTGTGGCCCGGGCGTTGCTCCGGGTTTTACTTTTAGTAGGTTTACTTTTTTGATAAAATGTGCCCATTTTTAAAAGATTGTATTTTACATTTATATAGGAAAATATAACATACATTGTAGATTTGTAGCTAGTTAAGATGGTAGAAGTGAAACTTTAATCCACGAGGTTTGATGTTCGATCCTTGCTACATGATTTTTTTTGGTTGTCAACATGCCATGACGATTATTAGCGGTGACATGGCGTAATAAGGAGGGGGTATACGTGGCACATACACGTTTTCATAAACGTCTTTTAATATATTAGTATAGATAGATGAAAAAGTGAAGAGAAGTTGAGTAGGAACCATCTTATCTCCTCCGAATAGCCTACCGGTAAAATCATTGCCGACTAGTCTCCCTTTATGAGATACATTGTAAGTTTTTTTGTGAATAGATAAAATAAAAATTTCTAAGCTATGTATTGAGACTCTGGAGTAAAACTCGTTCTTTG

mRNA sequence

CGGTTTATAATCACGTAGGTAGTACTATTTATAAATGGTTAAAAAAAAACTGCATCAGCTAGGGGTCGAACCCACGACCTTTTGGTTAGGAAATAAACACTCTATCCGCTGAGCTACAGACACTAATGTTGATAAGTTAAATTTAGAAATGTTTATAATTAATATTAATAAATGGTTAAAAAGAAATAAACTCATCAGGTAGGATTCGAACCCACAACCTCCTACGTAAACACACTCTATCCACTGAGCTACAGACACAATTGATGTCATAAGAGGTTACTTCTAAATTATATTTCTATTTAAACTGTAATTCATGTTAAAAATAATTTACAATTAAGTAAACCGCCATCTGAGATAGCGGTTTTGTTTTAATACAAACCGCTATCTGAGATAGCGGTTTATAACATTGAACCGCCATCTGAGATGGCGGTTTGCTTTAAAACGAAACCGCTATCTCATATAGCGGTTCAATGCTGAACCGGAAAAAAAAATTTACTTCTCTTTCTCCCTTGCTTACGTGGACGGTATGGTGGGAAATAACTTAAAAAGTAACGTATTTAGGGAATTGTTGGATCTTTATGCAATATTGAAGGAAATCGCTCTAAGCCCAAAACACAAAGCCCAAATAAACTAGAAAACCCAAAAGTCCTCTCTGTCGAGTGTCTTCTCTGAGTTTCTGCTACTCTTCTCGGCTTCATCTCACTGTCTCCTTTTCGTCACGGCTTCAAGCTTCTCATCTCATTCTTCACGGCTCCTTCTCCGATTATTTTCCCGGCTTAAAGATTCAAGGATCCCCTGAATGTCGATCACAATATTCAGACAAAGATGCCTAAATTTACAAGTACTAAAGCCAACTTGAAAGGAATTTAGCTACTAATTCAGTGTATTTTAAGAAAGTTTGACCTCATTGTTGGCCGCGGGAGTTTGTACAATGGCTACCGGACCTGGACTTGAGCCTCTTGTAGACCAGATGATTTCAGTTATTACCAATGATGGACGCAATATAGTGGGGATCCTAAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAATCGCATGAAAGGGTTTTTTCTACCAAGGAAGGAGTCCAACAGATTGTATTGGGTTTGTACATCATCAGGGGTGACAACATAAGCATTATTGGTGAGCTGGATGAAAACTTAGATGCTGATATTGAGCTTTCGCGGTTGAGGGGCAATCCTCTGAAGCCTGTCATTCACTGATCCAAAGTTCTCGGGGTAGAAGTGTGATATCAGTGAACATCTACAATAGGAGTTTTTGGATGGATGAGGCTTTATGCTGAAAGACAGCTTCAAAACTAAAGCAGATTAGACGCGACATTTAACTATGAACTAGTGTGTGGCCCGGGCGTTGCTCCGGGTTTTACTTTTAGTAGGTTTACTTTTTTGATAAAATGTGCCCATTTTTAAAAGATTGTATTTTACATTTATATAGGAAAATATAACATACATTGTAGATTTGTAGCTAGTTAAGATGGTAGAAGTGAAACTTTAATCCACGAGGTTTGATGTTCGATCCTTGCTACATGATTTTTTTTGGTTGTCAACATGCCATGACGATTATTAGCGGTGACATGGCGTAATAAGGAGGGGGTATACGTGGCACATACACGTTTTCATAAACGTCTTTTAATATATTAGTATAGATAGATGAAAAAGTGAAGAGAAGTTGAGTAGGAACCATCTTATCTCCTCCGAATAGCCTACCGGTAAAATCATTGCCGACTAGTCTCCCTTTATGAGATACATTGTAAGTTTTTTTGTGAATAGATAAAATAAAAATTTCTAAGCTATGTATTGAGACTCTGGAGTAAAACTCGTTCTTTG

Coding sequence (CDS)

ATGGCTACCGGACCTGGACTTGAGCCTCTTGTAGACCAGATGATTTCAGTTATTACCAATGATGGACGCAATATAGTGGGGATCCTAAAAGGTTTTGACCAGGCAACAAATATTATTCTTGATGAATCGCATGAAAGGGTTTTTTCTACCAAGGAAGGAGTCCAACAGATTGTATTGGGTTTGTACATCATCAGGGGTGACAACATAAGCATTATTGGTGAGCTGGATGAAAACTTAGATGCTGATATTGAGCTTTCGCGGTTGAGGGGCAATCCTCTGAAGCCTGTCATTCACTGA

Protein sequence

MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04486.1Spo04486.1mRNA


Homology
[Close]
BLAST of Spo04486.1 vs. NCBI nr
Match: gi|902191461|gb|KNA11857.1| (hypothetical protein SOVF_131280 [Spinacia oleracea])

HSP 1 Score: 197.6 bits (501), Expect = 1.000e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH
Sbjct: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. NCBI nr
Match: gi|902209291|gb|KNA16174.1| (hypothetical protein SOVF_091350 [Spinacia oleracea])

HSP 1 Score: 189.5 bits (480), Expect = 2.800e-45
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNISIIGELDE+LDA IELS+LRG+PLKPVIH
Sbjct: 61 LYIIRGDNISIIGELDEDLDAHIELSQLRGHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. NCBI nr
Match: gi|731361965|ref|XP_010692642.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm8 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.7 bits (470), Expect = 4.000e-44
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNI +IGELDE+LDA IEL +LRG+PLKPVIH
Sbjct: 61 LYIIRGDNIGVIGELDEDLDAHIELPQLRGHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. NCBI nr
Match: gi|695018720|ref|XP_009396334.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm8 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 175.3 bits (443), Expect = 5.400e-41
Identity = 82/98 (83.67%), Postives = 94/98 (95.92%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M+TGPGLE LVDQ ISVITNDGRNIVG+L+GFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSTGPGLESLVDQTISVITNDGRNIVGVLRGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNIS++GELDE LDA+++LS+LR +PLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDANLDLSKLRAHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. NCBI nr
Match: gi|586677709|ref|XP_006839014.1| (PREDICTED: sm-like protein LSM8 [Amborella trichopoda])

HSP 1 Score: 174.5 bits (441), Expect = 9.200e-41
Identity = 83/98 (84.69%), Postives = 94/98 (95.92%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M++GPGLE LVDQ ISVITNDGRNIVGILKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNIS+IGELDE LD++++LS+LR +PLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QX62_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_131280 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.100e-48
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH
Sbjct: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_091350 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.900e-45
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNISIIGELDE+LDA IELS+LRG+PLKPVIH
Sbjct: 61 LYIIRGDNISIIGELDEDLDAHIELSQLRGHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1X8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013070 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.800e-44
Identity = 91/98 (92.86%), Postives = 95/98 (96.94%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG
Sbjct: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNI +IGELDE+LDA IEL +LRG+PLKPVIH
Sbjct: 61 LYIIRGDNIGVIGELDEDLDAHIELPQLRGHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Match: M0SNL1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.800e-41
Identity = 82/98 (83.67%), Postives = 94/98 (95.92%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M+TGPGLE LVDQ ISVITNDGRNIVG+L+GFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSTGPGLESLVDQTISVITNDGRNIVGVLRGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNIS++GELDE LDA+++LS+LR +PLKPVIH
Sbjct: 61 LYIIRGDNISVVGELDEELDANLDLSKLRAHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Match: W1P0W8_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00002p00272060 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.400e-41
Identity = 83/98 (84.69%), Postives = 94/98 (95.92%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          M++GPGLE LVDQ ISVITNDGRNIVGILKGFDQATNIILDESHERV+STKEGVQQ+VLG
Sbjct: 1  MSSGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNIS+IGELDE LD++++LS+LR +PLKPVIH
Sbjct: 61 LYIIRGDNISVIGELDEELDSNLDLSKLRAHPLKPVIH 98
[Close]
BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Match: LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana GN=LSM8 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.100e-40
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = 1 

		  

Query: 1  MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLG 60
          MA   GLE LVDQ+ISVITNDGRNIVG+LKGFDQATNIILDESHERVFSTKEGVQQ VLG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          LYIIRGDNI +IGELDE LDA ++ S+LR +PLKPV+H
Sbjct: 61 LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
[Close]
BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Match: LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 6.900e-28
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          LE  +++ ++VIT+DGR IVG LKGFDQ  N+ILDESHERVFS+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          DN+++IGE+DE  D+ ++L  +R  PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Match: LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 6.900e-28
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          LE  +++ ++VIT+DGR IVG LKGFDQ  N+ILDESHERVFS+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          DN+++IGE+DE  D+ ++L  +R  PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Match: LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 6.900e-28
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          LE  +++ ++VIT+DGR IVG LKGFDQ  N+ILDESHERVFS+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          DN+++IGE+DE  D+ ++L  +R  PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Match: LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3)

HSP 1 Score: 124.4 bits (311), Expect = 6.900e-28
Identity = 54/92 (58.70%), Postives = 74/92 (80.43%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          LE  +++ ++VIT+DGR IVG LKGFDQ  N+ILDESHERVFS+ +GV+Q+VLGLYI+RG
Sbjct: 5  LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64

Query: 67 DNISIIGELDENLDADIELSRLRGNPLKPVIH 99
          DN+++IGE+DE  D+ ++L  +R  PL  V H
Sbjct: 65 DNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
[Close]
BLAST of Spo04486.1 vs. TAIR (Arabidopsis)
Match: AT1G65700.3 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 115.2 bits (287), Expect = 2.300e-26
Identity = 69/141 (48.94%), Postives = 80/141 (56.74%), Query Frame = 1 

		  

Query: 1   MATGPGLEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTK--------E 60
           MA   GLE LVDQ+ISVITNDGRNIVG+LKGFDQATNIILDESHERVFSTK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 61  GVQQI-----VLGLYIIRGD------------------------------NISIIGELDE 99
            + QI     VL  ++                                  NI +IGELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120
[Close]
BLAST of Spo04486.1 vs. TAIR (Arabidopsis)
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.200e-11
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L   +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    I LGLYIIRG
Sbjct: 15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRG 74

Query: 67 DNISIIGELD 77
          +N+ +IGELD
Sbjct: 75 ENVVLIGELD 83
[Close]
BLAST of Spo04486.1 vs. TAIR (Arabidopsis)
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.400e-10
Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 1 

		  

Query: 7  LEPLVDQMISVITNDGRNIVGILKGFDQATNIILDESHERVFSTKEGVQQIVLGLYIIRG 66
          L   +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    I LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRG 74

Query: 67 DNISIIGELD 77
          +N+ +IGELD
Sbjct: 75 ENVVLIGELD 83
The following BLAST results are available for this feature:
BLAST of Spo04486.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902191461|gb|KNA11857.1|1.0e-47100.hypothetical protein SOVF_1312... [more]
gi|902209291|gb|KNA16174.1|2.8e-4595.9hypothetical protein SOVF_0913... [more]
gi|731361965|ref|XP_010692642.1|4.0e-4492.8PREDICTED: U6 snRNA-associated... [more]
gi|695018720|ref|XP_009396334.1|5.4e-4183.6PREDICTED: U6 snRNA-associated... [more]
gi|586677709|ref|XP_006839014.1|9.2e-4184.6PREDICTED: sm-like protein LSM... [more]
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BLAST of Spo04486.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QX62_SPIOL7.1e-48100.Uncharacterized protein OS=Spi... [more]
A0A0K9RAZ3_SPIOL1.9e-4595.9Uncharacterized protein OS=Spi... [more]
A0A0J8B1X8_BETVU2.8e-4492.8Uncharacterized protein OS=Bet... [more]
M0SNL1_MUSAM3.8e-4183.6Uncharacterized protein OS=Mus... [more]
W1P0W8_AMBTC6.4e-4184.6Uncharacterized protein OS=Amb... [more]
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BLAST of Spo04486.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM8_ARATH2.1e-4081.6Sm-like protein LSM8 OS=Arabid... [more]
LSM8_PONAB6.9e-2858.7U6 snRNA-associated Sm-like pr... [more]
LSM8_MOUSE6.9e-2858.7U6 snRNA-associated Sm-like pr... [more]
LSM8_HUMAN6.9e-2858.7U6 snRNA-associated Sm-like pr... [more]
LSM8_BOVIN6.9e-2858.7U6 snRNA-associated Sm-like pr... [more]
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BLAST of Spo04486.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G65700.32.3e-2648.9Small nuclear ribonucleoprotei... [more]
AT1G19120.11.2e-1145.7Small nuclear ribonucleoprotei... [more]
AT3G14080.12.4e-1044.2Small nuclear ribonucleoprotei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 8..73
score: 2.3
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..74
score: 4.8
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 7..80
score: 2.47
NoneNo IPR availableGENE3D2.30.30.100coord: 7..82
score: 3.8
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 1..98
score: 1.7
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 1..98
score: 1.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0042908 xenobiotic transport
biological_process GO:0043090 amino acid import
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0008152 metabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0007165 signal transduction
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0005515 protein binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
RNA-Seq Expression