Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCGAAAAAAACCCTCTCTGTCACTTCTCCTTCCATTTCCTTTTTCCCTTTTTTTAAATCCACAAAAAGGAAGAAGAAGAAGTTCAACTTCAAGATAATTGCAGCATTCCCCATACAAATTCCCCCTTCACAGCTCCCAATTCCCCCTAAATTCGCCGACACTTTCTTAATGCGTCATAAAAGTGCCGCAAACAGTTGAAGATAGGCAGTAGAATTGAATCATTGTTGCAATTTGGTGTCATTTCTGTTAATTGAATCACCATTTTTGGAGAGAGAAAAGGTAAGCAAGGAGGAAATTATTCAAACCCAGAGAGAGGAACATTTAGGGTTTTGCGGGATTTAATTAGGGTTTTCTTAATCTCGTAAAATCGTTGTTTGTTTGTTCTTGAGAAGAGATGACGGATGTGGTACTGCACATATATGATGTGACGAACAGCGGTTCTGATAAGACGAACAATACTATCATGCATATCAACAAGATCTTTAAAGATGGTATTGGAATTGGTGGTATCTTTCACAGTGCTGTTCAGGTAATCTTGATTTTCATTAGTTTTGGCAATTTTGCTTACCAGATCTAGGGTTTTAGCTTGTTCATTTTTGTGAATTCATCTTATTTAGTTTGTTTTTATTGAATTTGTTCTTTGTTTTGTACTGCTGGATTATTGTTGTATGCTTAATTTGCAGTAATTTTGTGATTGGCATTATCCGAGTTTGAATAGCAAAAAGCTCCTTGGAGTTTCTTGATTGAATTTGGGTGTTGTTTGGTTGGTTGGTTGATTGTGGTGGCAAAGCTGAGATGTTATAGTAGACGTAGACTATGCTGCGAAATTTCCAGTCTCATTTTCAGTGAACTTCTGGTGGACTTGACCGATTGTAGACTTGATCGTGTTGTTGAATAGTTTATTTATGCAATAAGAGGAATACTTTTATCAGACTTATCAACGTAGTTAATTCGGCATCTTTGCATAAGGTGGTTGTTGTAATTGTGCTTGAGTTCCTGTAATGAGTTGCATTTGTTTGCCCAGATTAGATCCTTGTTATGTGAATTGAAGTTTCAGGCTAAAGGGAATAGGGAATACTGTGATCTTTATTCATTTTGGTTTCTGGTCTTAAGAATTGTACAATTAGCTGCCGCCGTGCCCTTGTCGTCCCACTAGTTATTTTCTGCAATTACTGCTTTAGTCTTAGGCATCACAAAACTGTCTGTTCCCAGCCCACTTGAGCCGATCAAGTATCAAACTATGATGCTTCCTTGTGACGCGGCTGTTTTATTTGTTTCAAAACAAATATTGAGACTTGCGTGTGTTGATCGGATAGGTGGAAACTCCCCTTATTTGTCACATCTTAGATTGTCCAAGTATTTGGATCTACAGTAATCTGCGTTGATATTTGGTTAGCGCTGACTACTTACTGGCACAGTAGTGCTGTTATCTATTATACCTCAACTTTCCCTTGCTGTCAAACTGTGACCTGCCTATTTTTCCCCTTCCCTTTATCGTTTTAAACTGAATTCACACATTTAACATATACTTGTAGTTGACTTCATGGGGTGTTAAGTGTGAACTTTTTAAATTGTCATCAAATTGTACAATTCTCATGCAATATCTGTATCTATATAATCATGGTGTGGTACTGCTCTTAACTTTCAATCATGCACACTAGAATTGTAGGACGAGAAATCGTAAATGAGTTCCACATTGTGCTTGCCTGGACTTACGTCTGTGTTTACAGAGTATCTATTTTTGTTGCTTTCAAATATTTTTGTAGTCGACGATTGCCTGTGTTGATTATAACAAGAATGTGTTATGAAATGTACATAAGGTCGGTGATGGTAAGTTTCTTGTAATGATTACAGGTGCATGGGGATGATGAATGGTCATTTGGGTTTTGTGAACAAGGAACTGGAGTCTTTAGCTGCCCTGCTACAAAAAACCCCATGTATACATACCGTGAAAAAATCGTTCTTGGACAAACAAGTCTTTCTAACTCCAAGGTTAATCAGATTTTGAGAGAACTCAGTAGAGAGTGGCCTGGGGAGTCCTATGACTTGCTCGCAAGAAATTGCAATCACTTCTGTGATGAGTTATGTGAAAGGTTTGGTGTTCCCAAACTTCCAGGTATAACATCTTTTCAGCCCTGCTTTTGTAATAGGCGAGAGTTAATTCATGACCCTTATTATTGATTGTTTATGTGAATATGCATGGTTATTTTGTTATTGTCATGAGTTGACATTTACATTCATACCCTTTTGTATGCAATCGTTTAGCTGATCTGAAGTGAGATAGCATTGTGACAAGAAGCAAGAATCTGTACTTTAAGAGTTAAAGGCCAACAACTGCTCAATTTTCTGTGGTGGTGCAATATCTGGCATCACATGTCATATTCTCAAGAGGTTTAGAAGTTCGAATTCCTGATGGAAATGTTACACTAGTGTGTTCTTAGGCATATGTAGTAGCATTTTGTGTTCACTATACAAATCATTTTCATGATTCTTTCTGAACTAGTGGAGTTCGAGGGAATGCTGGTGGAAATTTGAGCTATCTAGTATCTATATTCCTTTTCAATCTATCCCTTGTTGTCATTCACTTAGACCTTTGTTCCTTTATTTCACATCAAAATTTTCTTTTTAGTTTGATAGCGATCTATATGGGTCTTGTGTTGACCCAACATGGATTCTCTATGCCGTTATCTCGTTTTCCTTCTGCAGCTAGTGTGTATTTTTAGGATTGTTAGCCTTTTGTGATCTTATCTCTCCATGTTTACCAGATAACGTTTCTACTGCTAGATAAAGAGTGAGTTTGGGAAGTTGTACTGCGTTAATCAGCCTGACATTTTCACTATGCATCACATGATGCTGGAGCAACTTCCATTATGTTTTTAGTTTATAATATGGTGAACGATGAATCATATGTCCAGCCTTGGCACTGCATATATTTTGTGCTCCCATGCCATTCTTCTTTTTTTCTCATCCCTTGCGAACTTATGCATGCGTGCATATGGTGGTGATAAGTCCTGATAACTGAGATCCTGTCTTATTTGTTCCATGTGGAAATTCTTTTATTAATTATTCCTGATGTTTACATTAGTGCTTCGACAAAATTCAAATTAACTCATACAGTAAGTGGCCTTTACAATGCACCTCTCCTTCCTCTTTCCTGACTTTTTTTTAAAAATCATTATGCAACTCAGAATGTGTCTCTACTCTTTAAGATTTATTTGAGTCTCGAGTTGCTTTTAGATAATAGATAGCCCCTGATTTTTGCAGGCTGGGTTAACAGATTTGCCAATGCTGGTGATGCTGCAGCTGAATTAGCGGGAAACACTGCATACCGTGTAAGCTTTGCTGCTTTACTATGTCATTAGAACTGTCTTTTTCATTGTTGCTGGTGAAGTATTAGCATATCAACTTTTTATATTGCATCCGAAAAGGTCAGGGAAATGTTCCATCCCTTCAACATACCACAGATGTAGTATCTTGTGGTTGTGAACCAACAACATTATAGGTCATTGTGTAGCGTTACGGCATGGAGCTGGATTGCTTAAATTATGGAAGTGGTTATAGGTCAGTTCTGTGGTGAAATTAGAGATGTCTGCAAAACGTTGGTGGTTTTAGGGAGGGTGGTGTAGATTGATTGGGAAGACGGCTTTAGATAGAGTGCTAATGTGATTATAAAAAAGAAAAAAAGAAAAAAAAGTGCTGGTGGTTGGATGGTTTCAATGAATTCGAATTTTGAGGCAGTGAAACTGATGAAACGGGTTGTGCAGTCATTTCCCAATAATGGTTGATTTGTGCAGTATAATATCAATTTTCTTAGCCCCCCTCTCTTCCAGGGACGATATAACATGTATGTCTAGGGATAGCAAACTGCGAAAGGACTTAAGATTGCATTCCCAAAAGCATTAGCGGCCTGTTTGGTAGCCGGTAATAAATGATGGGATTGAGAATAAATCTAAGTGTTATTTAGCAAGAAATTAACATCATGATATCCATAGTAATGAAATATTGTCTCAAACTTGGTGCTTTTCTTCGTAAATTTGCATTCCTACCTAAAACCACTCCCCAAATGGAAATGAATGGAATAGAAAATTATAAAGAAAAAGAGATAATTTTGAGTGAACTAGTATTACCATGGGAATTAATATTGATTTTCCTTGCCAATTTACATACAAATTCATTTTCATTGACACCATTTATGGCCGGCTACCGAACGGGCCGTAAAAGTAAACGGTTGGTTTAATATTATTGCCATCTATAGAATTTCTGTACAGCCCTCCCGCCCCCGTGTCATTCTTTCAAGTTCGTATGGCTGATTTGAGCAATTTATGTTGACAACTGCAGCTCAAACAAGCTAAAACAGAGATAGTCTCAGCCAGCAAGGTTGCATACCGTTTCCTCTCAGGCATTGCCACGAACTCACAAGTATCCCCTGATAACCAGAATCCTAACAAGACACCGCCCCGGTTTCAAGTTTCTTGGTTTAAGAACATGATTGCTGCTGGTAACAAACCCTCCTCAAGCTCAGTACTCGAGGTCCCAAATCAAGACGTGATTCGGCAACAGCAGCAACGACAGGGAGAAGATGATGAACCACTCAGACAGAATGCTCGCCGTGGTAGCTGATCATGGGAGGAAAGAGTACATGATTTCTAAAATGATGAAAAAGGAAACCATGGTTTTTCTCCATGAATTTGCTGTGTAAACTGAACTGTGTATCTATCCTTGTAAAATTTACTGCTCTTCTTAAAACTTGCACTTATGACCAACTCAAGATGTATGAACTATGAAGTAAAATGTGAAAATTGTTGTGATCCTTCAATTTCTTGCAATGAAATTGAGCAATGAAATTGATATGCCGGTTTTTTACATCCTGCTTCACCATCCTTTTGCTAGACACTAATGTTCTATTTTTATTTTTAATGGTGTTTGTAAGTTACATGCTTACAACTAGACATGGCAAACGGCTTACTTGGATCAACTTTGACAGGGT TCGAAAAAAACCCTCTCTGTCACTTCTCCTTCCATTTCCTTTTTCCCTTTTTTTAAATCCACAAAAAGGAAGAAGAAGAAGTTCAACTTCAAGATAATTGCAGCATTCCCCATACAAATTCCCCCTTCACAGCTCCCAATTCCCCCTAAATTCGCCGACACTTTCTTAATGCGTCATAAAAGTGCCGCAAACAGTTGAAGATAGGCAGTAGAATTGAATCATTGTTGCAATTTGGTGTCATTTCTGTTAATTGAATCACCATTTTTGGAGAGAGAAAAGGTAAGCAAGGAGGAAATTATTCAAACCCAGAGAGAGGAACATTTAGGGTTTTGCGGGATTTAATTAGGGTTTTCTTAATCTCGTAAAATCGTTGTTTGTTTGTTCTTGAGAAGAGATGACGGATGTGGTACTGCACATATATGATGTGACGAACAGCGGTTCTGATAAGACGAACAATACTATCATGCATATCAACAAGATCTTTAAAGATGGTATTGGAATTGGTGGTATCTTTCACAGTGCTGTTCAGGTGCATGGGGATGATGAATGGTCATTTGGGTTTTGTGAACAAGGAACTGGAGTCTTTAGCTGCCCTGCTACAAAAAACCCCATGTATACATACCGTGAAAAAATCGTTCTTGGACAAACAAGTCTTTCTAACTCCAAGGTTAATCAGATTTTGAGAGAACTCAGTAGAGAGTGGCCTGGGGAGTCCTATGACTTGCTCGCAAGAAATTGCAATCACTTCTGTGATGAGTTATGTGAAAGGTTTGGTGTTCCCAAACTTCCAGGCTGGGTTAACAGATTTGCCAATGCTGGTGATGCTGCAGCTGAATTAGCGGGAAACACTGCATACCGTCTCAAACAAGCTAAAACAGAGATAGTCTCAGCCAGCAAGGTTGCATACCGTTTCCTCTCAGGCATTGCCACGAACTCACAAGTATCCCCTGATAACCAGAATCCTAACAAGACACCGCCCCGGTTTCAAGTTTCTTGGTTTAAGAACATGATTGCTGCTGGTAACAAACCCTCCTCAAGCTCAGTACTCGAGGTCCCAAATCAAGACGTGATTCGGCAACAGCAGCAACGACAGGGAGAAGATGATGAACCACTCAGACAGAATGCTCGCCGTGGTAGCTGATCATGGGAGGAAAGAGTACATGATTTCTAAAATGATGAAAAAGGAAACCATGGTTTTTCTCCATGAATTTGCTGTGTAAACTGAACTGTGTATCTATCCTTGTAAAATTTACTGCTCTTCTTAAAACTTGCACTTATGACCAACTCAAGATGTATGAACTATGAAGTAAAATGTGAAAATTGTTGTGATCCTTCAATTTCTTGCAATGAAATTGAGCAATGAAATTGATATGCCGGTTTTTTACATCCTGCTTCACCATCCTTTTGCTAGACACTAATGTTCTATTTTTATTTTTAATGGTGTTTGTAAGTTACATGCTTACAACTAGACATGGCAAACGGCTTACTTGGATCAACTTTGACAGGGT ATGACGGATGTGGTACTGCACATATATGATGTGACGAACAGCGGTTCTGATAAGACGAACAATACTATCATGCATATCAACAAGATCTTTAAAGATGGTATTGGAATTGGTGGTATCTTTCACAGTGCTGTTCAGGTGCATGGGGATGATGAATGGTCATTTGGGTTTTGTGAACAAGGAACTGGAGTCTTTAGCTGCCCTGCTACAAAAAACCCCATGTATACATACCGTGAAAAAATCGTTCTTGGACAAACAAGTCTTTCTAACTCCAAGGTTAATCAGATTTTGAGAGAACTCAGTAGAGAGTGGCCTGGGGAGTCCTATGACTTGCTCGCAAGAAATTGCAATCACTTCTGTGATGAGTTATGTGAAAGGTTTGGTGTTCCCAAACTTCCAGGCTGGGTTAACAGATTTGCCAATGCTGGTGATGCTGCAGCTGAATTAGCGGGAAACACTGCATACCGTCTCAAACAAGCTAAAACAGAGATAGTCTCAGCCAGCAAGGTTGCATACCGTTTCCTCTCAGGCATTGCCACGAACTCACAAGTATCCCCTGATAACCAGAATCCTAACAAGACACCGCCCCGGTTTCAAGTTTCTTGGTTTAAGAACATGATTGCTGCTGGTAACAAACCCTCCTCAAGCTCAGTACTCGAGGTCCCAAATCAAGACGTGATTCGGCAACAGCAGCAACGACAGGGAGAAGATGATGAACCACTCAGACAGAATGCTCGCCGTGGTAGCTGA MTDVVLHIYDVTNSGSDKTNNTIMHINKIFKDGIGIGGIFHSAVQVHGDDEWSFGFCEQGTGVFSCPATKNPMYTYREKIVLGQTSLSNSKVNQILRELSREWPGESYDLLARNCNHFCDELCERFGVPKLPGWVNRFANAGDAAAELAGNTAYRLKQAKTEIVSASKVAYRFLSGIATNSQVSPDNQNPNKTPPRFQVSWFKNMIAAGNKPSSSSVLEVPNQDVIRQQQQRQGEDDEPLRQNARRGS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04447.1 vs. NCBI nr
Match: gi|902231297|gb|KNA22211.1| (hypothetical protein SOVF_036100 [Spinacia oleracea]) HSP 1 Score: 506.5 bits (1303), Expect = 2.600e-140 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo04447.1 vs. NCBI nr
Match: gi|731321970|ref|XP_010671635.1| (PREDICTED: deSI-like protein At4g17486 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 435.6 bits (1119), Expect = 5.600e-119 Identity = 210/246 (85.37%), Postives = 228/246 (92.68%), Query Frame = 1
BLAST of Spo04447.1 vs. NCBI nr
Match: gi|698434264|ref|XP_009798709.1| (PREDICTED: deSI-like protein At4g17486 [Nicotiana sylvestris]) HSP 1 Score: 377.9 bits (969), Expect = 1.400e-101 Identity = 183/248 (73.79%), Postives = 211/248 (85.08%), Query Frame = 1
BLAST of Spo04447.1 vs. NCBI nr
Match: gi|747074888|ref|XP_011084455.1| (PREDICTED: deSI-like protein At4g17486 [Sesamum indicum]) HSP 1 Score: 375.2 bits (962), Expect = 9.000e-101 Identity = 183/248 (73.79%), Postives = 213/248 (85.89%), Query Frame = 1
BLAST of Spo04447.1 vs. NCBI nr
Match: gi|224079684|ref|XP_002305910.1| (hypothetical protein POPTR_0004s07790g [Populus trichocarpa]) HSP 1 Score: 371.7 bits (953), Expect = 1.000e-99 Identity = 184/259 (71.04%), Postives = 218/259 (84.17%), Query Frame = 1
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRN9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_036100 PE=4 SV=1) HSP 1 Score: 506.5 bits (1303), Expect = 1.800e-140 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 1
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CVS2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g053490 PE=4 SV=1) HSP 1 Score: 435.6 bits (1119), Expect = 3.900e-119 Identity = 210/246 (85.37%), Postives = 228/246 (92.68%), Query Frame = 1
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Match: B9H3G9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s07790g PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 6.900e-100 Identity = 184/259 (71.04%), Postives = 218/259 (84.17%), Query Frame = 1
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Match: A0A067JRV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26065 PE=4 SV=1) HSP 1 Score: 371.3 bits (952), Expect = 9.100e-100 Identity = 180/244 (73.77%), Postives = 207/244 (84.84%), Query Frame = 1
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Match: A0A022PXL7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a012735mg PE=4 SV=1) HSP 1 Score: 369.4 bits (947), Expect = 3.400e-99 Identity = 176/235 (74.89%), Postives = 206/235 (87.66%), Query Frame = 1
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Match: PPDEX_ARATH (DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 1.900e-18 Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 1
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Match: DESI2_XENLA (Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 5.400e-13 Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 1
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Match: DESI2_RAT (Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 5.400e-13 Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 1
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Match: DESI2_DANRE (Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 7.100e-13 Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 1
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Match: DESI2_PONAB (Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 7.100e-13 Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Match: AT4G25680.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 315.8 bits (808), Expect = 2.300e-86 Identity = 158/248 (63.71%), Postives = 191/248 (77.02%), Query Frame = 1
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Match: AT4G25660.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 314.3 bits (804), Expect = 6.700e-86 Identity = 157/251 (62.55%), Postives = 191/251 (76.10%), Query Frame = 1
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Match: AT2G25190.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 103.6 bits (257), Expect = 1.800e-22 Identity = 62/181 (34.25%), Postives = 97/181 (53.59%), Query Frame = 1
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Match: AT5G47310.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 96.7 bits (239), Expect = 2.200e-20 Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 1
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Match: AT5G25170.1 (PPPDE putative thiol peptidase family protein) HSP 1 Score: 95.1 bits (235), Expect = 6.400e-20 Identity = 42/106 (39.62%), Postives = 65/106 (61.32%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04447.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04447.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04447.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04447.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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