Spo04141 (gene)

Overview
NameSpo04141
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRNA-dependent RNA polymerase 2
LocationSpoScf_00523 : 259137 .. 264909 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATATTCGTCCCCATTTACAAAAGTTAGACTACACTTTTGACCTTCTTTGACAACAACAAAGAAAATCCCAGTCACTTTCTCTCTCCTCACTGAACTCGCTCACTCAACTACCAGTCCACCAGCAATGGCGATAGACAGACCCACAGTGGAAAGATCCACCGTGCGAGTCTCCAACATCCCAACAACCGCCACCGCGCAAGACATCTTCGACTTCCTCGAATCAAAAATCGGAAAGGGTACAATCTTTGCCATTGAAATCTTCACGGAGAAGAAGAATTGGAAATCCAAGGGTCATGGCCGTGTACAATTTGAAAGCCTTGATTCAAAATCCAAAGCCCAAGAGTTGGCACTGGAGAACGACCTCCTCTTCAAAGGGTGTCCACTTTCTCTCTCCTCTTCTCACGAGGATGTTGTGGTTAGGCCCATTGAGCCCAGTTGCAGGGGTGTTCGTGGGGATGTATATGTAGGTTTGATGAAGGAGGAGGATCAAATGTGTGTGATTGATACTTTGGAGGATGCTAAGATCTGGGTTATGCCCGATAGGAATTGTGTTGTGTTTCATCTTGAGCTTGAGGGAAAGTTTTATAAAATGGAGGTTCATTTTGATGATATTTTTGAGGCTTTTGGGTGTTACTTTGATGAGCAGTCTCCTGCTATTCTTCTCAAGGTGAGTTTTGTTGTTGTGAATTCTCTCATTGTTTCTTTAATTAGGGCTTAAAGTTTTAGATAGATGAATTGTGGATTGCGCTTACCTTTGCATGTGTGATAATTGGATGAGACTCTTGCTTTAGTGGTTGTTTGGTAGTCGGTAATAAATGCCGGTAATGGAATTGAATTTGTATGTAATTTTGTCAGTGAAGTGATGGTAATGTTCTTGGTAATTGTTTATTTATGGATGAGGTTTATGTGGATTTCGTTTGGATTGTGGTGCTTTGATTCGTATGTTATGGTTTTGATGAATTTTTAGAAGGCTGCCGCTTTTGGTTACACTTTATTCTCCATTTAATAGGCTCTGGTTAAGAAGCTTTTAGTTTGTACTAGGTAAAATTGGCTAAACGCATTCCATGAAAACTAATGTGATGTACAATTCATATGTGGTAGAAGAAGTGAATTTGTTTATGGAAATAGCATGCATAAGCAGCAAGCACAAAACCATTTTTGATGAGGGTGGTGTGTAGGTGATATGGTAGAAGAAGTGAATTTGTTTATGGAAATAGCATGCATAAGCAGCAAGCATACAACCATTATTGATGAGGGTGGTGTGTAGGTGATATGGGTTTGAGTTGTGAAGCAGTGAAACTAATCATGGTGGTTTTTATCTTGTTTAAGTAGTGCCGTACTGTTATTGTTTGGCAGAAGCCTTGAACCTAAGTACTGGTTTGTATTGATGTTGGCTTTTGAACTTACTGATCTTGGATTGTAAGTAGCCTGTTTATCCATTTCAAGGCTACCACTTTGCAGAGGAACTCTGTTCTGAGATCTAGAGGTTTATTGATGGACGAGAATATTGTTGTGCACTTGTGCCACACATTTAAGGGGGAGATAATTTTATCGGAATTTCAACATTCATAGAAACCGTTTAGGAAATTATGTGTCTTCCTTGTCTATCCCTTGTTTCCCAGTACTTTACCTTTCACTAAAAGCTTAGTATGTCGAGTTGTGTATGGCCATATGGGAGTTGGGGTTATTGTGCGTGAAGTCATGAACAATTACAAGGGCCAGCCTTGCTGTGTGCTACCAGTTAATTTGCCGGGGTGTCGGAGATGCGTTATGCGGAACTATCTGTTCTGAGGTCTAGAGGATTACTCCTATTTACTACTGTCTCTTAGCTTGTTCACTAAGTTGTACATGTTTGCAGCTTGGTTTGTCTCTTAGCTTGTTCACTGAGTTGTACATGCTTCGCACATCAGAAACGTTGTTACTGAATTAGCGAGTTGAATGTTTTTTCTGTTTTCTTCTGCCATTTAAACTGGTTCTCTGATCATTAATTCTATCTTTTGTGGGCGCAATGTTTCAATGTCTGTTGCAGCTGAAGTATGCACCAAAAATTTACCAGAGGATTTCAGGTCCCAATTTGTATACAAGGTTCACTGCTGATCGCTATCATATTTGCAAGGAAGATCTTGAGTTTATCTGGGTACGTACTACAGATATATCAAAAAGTAATTCTATCGGATTATCTTCTGCATTTTGTTGGGAAATCGGAGAGGGATCCATGGGTCTAGATTTCTTTTCCACCATTCCCTTCTACAGAAAAATTTTGGAAAATTTTGTATTAGAAGAATACGACGAGTATTCTTCGGTCTCAGGTCTTGTTCCCCTTGTAAAGTGTGAGAACAATTTGAAATTGGATTATGAAATACTTTTCCAAATCAACTCCTTAGTCCACACACTCAAAATTAGTTTAGCTGATGTGACTACAGAGCTTATTGATTTTCTCAGTACTCTGAGCATAGACAGGGCTCATATGGTTCTCCAGAAAGTACACAAGTTGAGTTCCACATGTTATGAGCCGCTTTCATTTATTAAGACTCAGGTACAGGCTCTAGATGATGCACAGAATAGTAGTCTGTTTGTACGAAGCCGCTTGACGAATGATAATATAATGAGATGTCACAGGGCTTTAGTCACCCCAACGAAAATATGCCTATTGGGTCCCGAACTGGAAGCTTCAAATTACATTGTCAAGAACTTTTCAGCCCACACCTCAGATTTCATGAGAGTTACTTTTGTAGATGAAGACTGGGGTAAGCTACACCCAATGGCTGTATCAGTCAGTACTGAGCAAGGAATATTCTCAAAGCCATTTAGAACAGATGTATATCACCGAATATTGTCCATTCTTCGAGAAGGGATTGTGATTGGGGATAAAAGATTTGAGTTCTTGGCCTTTTCAGCAAGCCAGCTTCGGTCAAATTCTGTATGGATGTTTGCTTCGAATGATAAAGTGAAGGCAGATGACATACGTGAATGGATGGGAAGCTTTAACAAGATCCGTAGTATTTCAAAATGTGCAGCTAGAATGGGGCAATTGTTCAGTGCTGCTTGGCAGACAGTAGTTGTTCCTGTACAGGATGTGGAAGTTATTCCTGATATAGAACTAAATTCAGATGGCATTGACTACTGCTTTTCAGATGGTATTGGAAAGATTTCCCTCTCTTTTGCTAGACAAGTTGCACAAAAATGTGGGGTAGAACACACTCCATCCGCCTTTCAGATTCGTTACGGTGGTTATAAAGGTGTAGTAGCTGTAGACCGGAATTCCTTCAGAAAGTTATCTCTGCGTAGTAGCATGCTTAAGTTTGAATCCAAAAATAGAATGCTTAACGTAACCAAATGTAACAAGTCCCAATCATGTTATCTGAATAGAGAAATTGTTACTCTTTTGACCACATTGGGGGTTGAAGACAGTAGCCTTGAAGCTTTGTTGCAGGAACACATGCGTCTTCTTGCAAATACGTTGACTAGTAGAGATGCAGCTTTGGCTTTGCTTGAGAGCACGGATATGGGGGAAAGCAAAACGCTTGTAAAAATGTTGCGTCATGGTTTTGAACCAAATTCAGAGCCTTACCTCTTAATGATGCTTCGAGCATACCTGGAGAGCCAACTGTCTGATTTGAGAGGAAGATGTCGTCTTTACGTTCCAAAGGGCCGTGTTTTACTTGGATGCTTGGATGAGACCGGGATTTTGAACTACGGGCAGATATTTGTCCGTTTAACCCTGAGGAAAACCGAACTTGAAAATATGGATCCAAGTATCTTCCACAAATTGGATGAGAAGACAGCAATACTTACTGGGACGGTGGTTGTCACTAAGAATCCTTGCTTACACCCTGGTGATGTCAGAGTGCTGGAAGCTGTTTATGAGGTGGCTTTGGAAGAGAAGGGACTAATTGACTGCCTGATTTTCCCACAGAAAGGAGAAAGGTAAATGAAGTTATCTATTTGATCATATCTGACAGTAGGCAATATGAACTTCATCTTAATACAGAATTGTTTGCCTCTTAGTTATCATGGTATTGCTCTGTCCGTCCGTCCTTTTTCTGGGTTGATGTTTTCTTTATGAAATATGCCTTGAAAGTTTAATGGGTTTCATAGGGAGAGTGTGAACTGTCTACGGATGATTTTTCATGTATTTTCTGTAACCCTTTCTGAACCTGTCACATTTTCAAGAAAAAGATTCAACACATAGTTCTCAATGGAGTTGCGAAGATAAAATGTTGTGTTTTAATTTTTAATTTTTTTTTNATTCAACACATAGTTCTCAATGGAGTTGCGAAGATAAAATGTTGTGTTTTAATTTTTAATTTTTTTTTTGCAATGGGCTACACCAAATGTCTTGCTAAACCGGTCATCTATTATAGTCGATTTTCCACTTTGGCATTTAAATGTTGACACCAAGTTCACATACTACACATGCAGGCCTCATCCAAATGAGTGTTCAGGCGGCGATTTAGACGGTGATTTATATTTCANATACTACACATGCAGGCCTCATCCAAATGAGTGTTCAGGCGGCGATTTAGACGGTGATTTATATTTCATAAGCTGGGACGAGAAACTCATACCTCCGAGAACTGTGGCCCCCATGGACTACACTGGCTGCAGACCTCGCATCATGGACCATGACGTTACAATGGAGGTCCGTAGTTTACCTACCTAGCATCTCTTTCTATTTGTGTCACACTTCATCTTCATTTTATTAGATTGTCACTCTAACTGTCAAAATAATAATGCAGGAGATTCAACGATTCTTTGTTGATTATATGATAAGCGACACACTGGGAACAATCTCAACCGCACACTTGGTCCTTGCAGACCGTGAACCCGAAAAGGCCCTAAGCCCTAAATGTCTCCGCTTAGCTGAGCTACATTCAATGGCAGTTGACTATGCAAAGACCGGTGCACCAGCCGAGATGCCCAACGTTTTGAAACCAAAAGAGTATCCTGATTTTATGGAAAGGTGGGATAGACCCACTTATATATCCCAAGGAATTCTCGGTAAACTCTACCGTGCCACTGTCTCTGCAACAATTCCAAGTTCAGATTTCAAGTGGTCAGAGGAAACTGCTCGAGCTGCTTATGACTCCGACTTAGAAGTTCCTGGGTTTGAGGCCTTCATTGATACTGCAAAAAGCTGCAAGGAGATGTACATGGAGAAGATGAGTATGTTGTTGATGTTCTATGGAGCAAATAGTGAGGATGAGATACTTACAGGTAACCTAAGAAGCAAGTCTATATATTTGAGGAAGGATAACAGAAGGTATAGAGAGCTTACAGATAGGATTTTGATTTCTGTAAAAAGTCTTCAGAAAGAAGCGAAAGGATGGTTCGAGAATAGTTGTGGAGAAGAAGATCGTCAAAAGATGGCTTCGGCATGGTACCATGTTACTTACCACCCTGACCATTGCCATGACAGTGACAACTGCCTTGGTTTTCCCTGGACTGTACATGATGTTCTGGTTACTATCAAATCTGCTAACCGAAAACAACCCTGAATTCGTGTGTTCGTAGATGGCTTATATATCAAGCTTAGATTTACCTCGGCTCGGCAGAATATCAACTTAGATGCCTTTGCTATGTTGTAGTCCCTTTGTACAAAGTGTGTAATGGACTAATGGTAATGGTGGTTAGCTGTGACAGCAGGACTTAAAGCCCTTAATTGACTAATTATGTGTTATTATGGACTTAAATCCCTTAATTGACTAATTATGTATTATTATGAACTTAAAGCCCTTGATTGACTAATTATGGTAACGGTGATTAGCGG

mRNA sequence

AAAATATTCGTCCCCATTTACAAAAGTTAGACTACACTTTTGACCTTCTTTGACAACAACAAAGAAAATCCCAGTCACTTTCTCTCTCCTCACTGAACTCGCTCACTCAACTACCAGTCCACCAGCAATGGCGATAGACAGACCCACAGTGGAAAGATCCACCGTGCGAGTCTCCAACATCCCAACAACCGCCACCGCGCAAGACATCTTCGACTTCCTCGAATCAAAAATCGGAAAGGGTACAATCTTTGCCATTGAAATCTTCACGGAGAAGAAGAATTGGAAATCCAAGGGTCATGGCCGTGTACAATTTGAAAGCCTTGATTCAAAATCCAAAGCCCAAGAGTTGGCACTGGAGAACGACCTCCTCTTCAAAGGGTGTCCACTTTCTCTCTCCTCTTCTCACGAGGATGTTGTGGTTAGGCCCATTGAGCCCAGTTGCAGGGGTGTTCGTGGGGATGTATATGTAGGTTTGATGAAGGAGGAGGATCAAATGTGTGTGATTGATACTTTGGAGGATGCTAAGATCTGGGTTATGCCCGATAGGAATTGTGTTGTGTTTCATCTTGAGCTTGAGGGAAAGTTTTATAAAATGGAGGTTCATTTTGATGATATTTTTGAGGCTTTTGGGTGTTACTTTGATGAGCAGTCTCCTGCTATTCTTCTCAAGCTGAAGTATGCACCAAAAATTTACCAGAGGATTTCAGGTCCCAATTTGTATACAAGGTTCACTGCTGATCGCTATCATATTTGCAAGGAAGATCTTGAGTTTATCTGGGTACGTACTACAGATATATCAAAAAGTAATTCTATCGGATTATCTTCTGCATTTTGTTGGGAAATCGGAGAGGGATCCATGGGTCTAGATTTCTTTTCCACCATTCCCTTCTACAGAAAAATTTTGGAAAATTTTGTATTAGAAGAATACGACGAGTATTCTTCGGTCTCAGGTCTTGTTCCCCTTGTAAAGTGTGAGAACAATTTGAAATTGGATTATGAAATACTTTTCCAAATCAACTCCTTAGTCCACACACTCAAAATTAGTTTAGCTGATGTGACTACAGAGCTTATTGATTTTCTCAGTACTCTGAGCATAGACAGGGCTCATATGGTTCTCCAGAAAGTACACAAGTTGAGTTCCACATGTTATGAGCCGCTTTCATTTATTAAGACTCAGGTACAGGCTCTAGATGATGCACAGAATAGTAGTCTGTTTGTACGAAGCCGCTTGACGAATGATAATATAATGAGATGTCACAGGGCTTTAGTCACCCCAACGAAAATATGCCTATTGGGTCCCGAACTGGAAGCTTCAAATTACATTGTCAAGAACTTTTCAGCCCACACCTCAGATTTCATGAGAGTTACTTTTGTAGATGAAGACTGGGGTAAGCTACACCCAATGGCTGTATCAGTCAGTACTGAGCAAGGAATATTCTCAAAGCCATTTAGAACAGATGTATATCACCGAATATTGTCCATTCTTCGAGAAGGGATTGTGATTGGGGATAAAAGATTTGAGTTCTTGGCCTTTTCAGCAAGCCAGCTTCGGTCAAATTCTGTATGGATGTTTGCTTCGAATGATAAAGTGAAGGCAGATGACATACGTGAATGGATGGGAAGCTTTAACAAGATCCGTAGTATTTCAAAATGTGCAGCTAGAATGGGGCAATTGTTCAGTGCTGCTTGGCAGACAGTAGTTGTTCCTGTACAGGATGTGGAAGTTATTCCTGATATAGAACTAAATTCAGATGGCATTGACTACTGCTTTTCAGATGGTATTGGAAAGATTTCCCTCTCTTTTGCTAGACAAGTTGCACAAAAATGTGGGGTAGAACACACTCCATCCGCCTTTCAGATTCGTTACGGTGGTTATAAAGGTGTAGTAGCTGTAGACCGGAATTCCTTCAGAAAGTTATCTCTGCGTAGTAGCATGCTTAAGTTTGAATCCAAAAATAGAATGCTTAACGTAACCAAATGTAACAAGTCCCAATCATGTTATCTGAATAGAGAAATTGTTACTCTTTTGACCACATTGGGGGTTGAAGACAGTAGCCTTGAAGCTTTGTTGCAGGAACACATGCGTCTTCTTGCAAATACGTTGACTAGTAGAGATGCAGCTTTGGCTTTGCTTGAGAGCACGGATATGGGGGAAAGCAAAACGCTTGTAAAAATGTTGCGTCATGGTTTTGAACCAAATTCAGAGCCTTACCTCTTAATGATGCTTCGAGCATACCTGGAGAGCCAACTGTCTGATTTGAGAGGAAGATGTCGTCTTTACGTTCCAAAGGGCCGTGTTTTACTTGGATGCTTGGATGAGACCGGGATTTTGAACTACGGGCAGATATTTGTCCGTTTAACCCTGAGGAAAACCGAACTTGAAAATATGGATCCAAGTATCTTCCACAAATTGGATGAGAAGACAGCAATACTTACTGGGACGGTGGTTGTCACTAAGAATCCTTGCTTACACCCTGGTGATGTCAGAGTGCTGGAAGCTGTTTATGAGGTGGCTTTGGAAGAGAAGGGACTAATTGACTGCCTGATTTTCCCACAGAAAGGAGAAAGGCCTCATCCAAATGAGTGTTCAGGCGGCGATTTAGACGGTGATTTATATTTCATAAGCTGGGACGAGAAACTCATACCTCCGAGAACTGTGGCCCCCATGGACTACACTGGCTGCAGACCTCGCATCATGGACCATGACGTTACAATGGAGGAGATTCAACGATTCTTTGTTGATTATATGATAAGCGACACACTGGGAACAATCTCAACCGCACACTTGGTCCTTGCAGACCGTGAACCCGAAAAGGCCCTAAGCCCTAAATGTCTCCGCTTAGCTGAGCTACATTCAATGGCAGTTGACTATGCAAAGACCGGTGCACCAGCCGAGATGCCCAACGTTTTGAAACCAAAAGAGTATCCTGATTTTATGGAAAGGTGGGATAGACCCACTTATATATCCCAAGGAATTCTCGGTAAACTCTACCGTGCCACTGTCTCTGCAACAATTCCAAGTTCAGATTTCAAGTGGTCAGAGGAAACTGCTCGAGCTGCTTATGACTCCGACTTAGAAGTTCCTGGGTTTGAGGCCTTCATTGATACTGCAAAAAGCTGCAAGGAGATGTACATGGAGAAGATGAGTATGTTGTTGATGTTCTATGGAGCAAATAGTGAGGATGAGATACTTACAGGTAACCTAAGAAGCAAGTCTATATATTTGAGGAAGGATAACAGAAGGTATAGAGAGCTTACAGATAGGATTTTGATTTCTGTAAAAAGTCTTCAGAAAGAAGCGAAAGGATGGTTCGAGAATAGTTGTGGAGAAGAAGATCGTCAAAAGATGGCTTCGGCATGGTACCATGTTACTTACCACCCTGACCATTGCCATGACAGTGACAACTGCCTTGGTTTTCCCTGGACTGTACATGATGTTCTGGTTACTATCAAATCTGCTAACCGAAAACAACCCTGAATTCGTGTGTTCGTAGATGGCTTATATATCAAGCTTAGATTTACCTCGGCTCGGCAGAATATCAACTTAGATGCCTTTGCTATGTTGTAGTCCCTTTGTACAAAGTGTGTAATGGACTAATGGTAATGGTGGTTAGCTGTGACAGCAGGACTTAAAGCCCTTAATTGACTAATTATGTGTTATTATGGACTTAAATCCCTTAATTGACTAATTATGTATTATTATGAACTTAAAGCCCTTGATTGACTAATTATGGTAACGGTGATTAGCGG

Coding sequence (CDS)

ATGGCGATAGACAGACCCACAGTGGAAAGATCCACCGTGCGAGTCTCCAACATCCCAACAACCGCCACCGCGCAAGACATCTTCGACTTCCTCGAATCAAAAATCGGAAAGGGTACAATCTTTGCCATTGAAATCTTCACGGAGAAGAAGAATTGGAAATCCAAGGGTCATGGCCGTGTACAATTTGAAAGCCTTGATTCAAAATCCAAAGCCCAAGAGTTGGCACTGGAGAACGACCTCCTCTTCAAAGGGTGTCCACTTTCTCTCTCCTCTTCTCACGAGGATGTTGTGGTTAGGCCCATTGAGCCCAGTTGCAGGGGTGTTCGTGGGGATGTATATGTAGGTTTGATGAAGGAGGAGGATCAAATGTGTGTGATTGATACTTTGGAGGATGCTAAGATCTGGGTTATGCCCGATAGGAATTGTGTTGTGTTTCATCTTGAGCTTGAGGGAAAGTTTTATAAAATGGAGGTTCATTTTGATGATATTTTTGAGGCTTTTGGGTGTTACTTTGATGAGCAGTCTCCTGCTATTCTTCTCAAGCTGAAGTATGCACCAAAAATTTACCAGAGGATTTCAGGTCCCAATTTGTATACAAGGTTCACTGCTGATCGCTATCATATTTGCAAGGAAGATCTTGAGTTTATCTGGGTACGTACTACAGATATATCAAAAAGTAATTCTATCGGATTATCTTCTGCATTTTGTTGGGAAATCGGAGAGGGATCCATGGGTCTAGATTTCTTTTCCACCATTCCCTTCTACAGAAAAATTTTGGAAAATTTTGTATTAGAAGAATACGACGAGTATTCTTCGGTCTCAGGTCTTGTTCCCCTTGTAAAGTGTGAGAACAATTTGAAATTGGATTATGAAATACTTTTCCAAATCAACTCCTTAGTCCACACACTCAAAATTAGTTTAGCTGATGTGACTACAGAGCTTATTGATTTTCTCAGTACTCTGAGCATAGACAGGGCTCATATGGTTCTCCAGAAAGTACACAAGTTGAGTTCCACATGTTATGAGCCGCTTTCATTTATTAAGACTCAGGTACAGGCTCTAGATGATGCACAGAATAGTAGTCTGTTTGTACGAAGCCGCTTGACGAATGATAATATAATGAGATGTCACAGGGCTTTAGTCACCCCAACGAAAATATGCCTATTGGGTCCCGAACTGGAAGCTTCAAATTACATTGTCAAGAACTTTTCAGCCCACACCTCAGATTTCATGAGAGTTACTTTTGTAGATGAAGACTGGGGTAAGCTACACCCAATGGCTGTATCAGTCAGTACTGAGCAAGGAATATTCTCAAAGCCATTTAGAACAGATGTATATCACCGAATATTGTCCATTCTTCGAGAAGGGATTGTGATTGGGGATAAAAGATTTGAGTTCTTGGCCTTTTCAGCAAGCCAGCTTCGGTCAAATTCTGTATGGATGTTTGCTTCGAATGATAAAGTGAAGGCAGATGACATACGTGAATGGATGGGAAGCTTTAACAAGATCCGTAGTATTTCAAAATGTGCAGCTAGAATGGGGCAATTGTTCAGTGCTGCTTGGCAGACAGTAGTTGTTCCTGTACAGGATGTGGAAGTTATTCCTGATATAGAACTAAATTCAGATGGCATTGACTACTGCTTTTCAGATGGTATTGGAAAGATTTCCCTCTCTTTTGCTAGACAAGTTGCACAAAAATGTGGGGTAGAACACACTCCATCCGCCTTTCAGATTCGTTACGGTGGTTATAAAGGTGTAGTAGCTGTAGACCGGAATTCCTTCAGAAAGTTATCTCTGCGTAGTAGCATGCTTAAGTTTGAATCCAAAAATAGAATGCTTAACGTAACCAAATGTAACAAGTCCCAATCATGTTATCTGAATAGAGAAATTGTTACTCTTTTGACCACATTGGGGGTTGAAGACAGTAGCCTTGAAGCTTTGTTGCAGGAACACATGCGTCTTCTTGCAAATACGTTGACTAGTAGAGATGCAGCTTTGGCTTTGCTTGAGAGCACGGATATGGGGGAAAGCAAAACGCTTGTAAAAATGTTGCGTCATGGTTTTGAACCAAATTCAGAGCCTTACCTCTTAATGATGCTTCGAGCATACCTGGAGAGCCAACTGTCTGATTTGAGAGGAAGATGTCGTCTTTACGTTCCAAAGGGCCGTGTTTTACTTGGATGCTTGGATGAGACCGGGATTTTGAACTACGGGCAGATATTTGTCCGTTTAACCCTGAGGAAAACCGAACTTGAAAATATGGATCCAAGTATCTTCCACAAATTGGATGAGAAGACAGCAATACTTACTGGGACGGTGGTTGTCACTAAGAATCCTTGCTTACACCCTGGTGATGTCAGAGTGCTGGAAGCTGTTTATGAGGTGGCTTTGGAAGAGAAGGGACTAATTGACTGCCTGATTTTCCCACAGAAAGGAGAAAGGCCTCATCCAAATGAGTGTTCAGGCGGCGATTTAGACGGTGATTTATATTTCATAAGCTGGGACGAGAAACTCATACCTCCGAGAACTGTGGCCCCCATGGACTACACTGGCTGCAGACCTCGCATCATGGACCATGACGTTACAATGGAGGAGATTCAACGATTCTTTGTTGATTATATGATAAGCGACACACTGGGAACAATCTCAACCGCACACTTGGTCCTTGCAGACCGTGAACCCGAAAAGGCCCTAAGCCCTAAATGTCTCCGCTTAGCTGAGCTACATTCAATGGCAGTTGACTATGCAAAGACCGGTGCACCAGCCGAGATGCCCAACGTTTTGAAACCAAAAGAGTATCCTGATTTTATGGAAAGGTGGGATAGACCCACTTATATATCCCAAGGAATTCTCGGTAAACTCTACCGTGCCACTGTCTCTGCAACAATTCCAAGTTCAGATTTCAAGTGGTCAGAGGAAACTGCTCGAGCTGCTTATGACTCCGACTTAGAAGTTCCTGGGTTTGAGGCCTTCATTGATACTGCAAAAAGCTGCAAGGAGATGTACATGGAGAAGATGAGTATGTTGTTGATGTTCTATGGAGCAAATAGTGAGGATGAGATACTTACAGGTAACCTAAGAAGCAAGTCTATATATTTGAGGAAGGATAACAGAAGGTATAGAGAGCTTACAGATAGGATTTTGATTTCTGTAAAAAGTCTTCAGAAAGAAGCGAAAGGATGGTTCGAGAATAGTTGTGGAGAAGAAGATCGTCAAAAGATGGCTTCGGCATGGTACCATGTTACTTACCACCCTGACCATTGCCATGACAGTGACAACTGCCTTGGTTTTCCCTGGACTGTACATGATGTTCTGGTTACTATCAAATCTGCTAACCGAAAACAACCCTGA

Protein sequence

MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04141.1Spo04141.1mRNA


Homology
BLAST of Spo04141.1 vs. NCBI nr
Match: gi|902213558|gb|KNA17291.1| (hypothetical protein SOVF_081360 [Spinacia oleracea])

HSP 1 Score: 2255.3 bits (5843), Expect = 0.000e+0
Identity = 1116/1116 (100.00%), Postives = 1116/1116 (100.00%), Query Frame = 1

		  

Query: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60
            MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV
Sbjct: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60

Query: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120
            QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE
Sbjct: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120

Query: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180
            DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL
Sbjct: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180

Query: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240
            KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG
Sbjct: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240

Query: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300
            EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV
Sbjct: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300

Query: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360
            HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS
Sbjct: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360

Query: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420
            SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW
Sbjct: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420

Query: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480
            GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW
Sbjct: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480

Query: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540
            MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN
Sbjct: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540

Query: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600
            SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR
Sbjct: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600

Query: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660
            SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT
Sbjct: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660

Query: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720
            SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP
Sbjct: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720

Query: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780
            KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC
Sbjct: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780

Query: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840
            LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP
Sbjct: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840

Query: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900
            PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP
Sbjct: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900

Query: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960
            KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS
Sbjct: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960

Query: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020
            ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE
Sbjct: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020

Query: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080
            ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH
Sbjct: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080

Query: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP 1117
            VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP
Sbjct: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP 1116

BLAST of Spo04141.1 vs. NCBI nr
Match: gi|731335445|ref|XP_010678731.1| (PREDICTED: RNA-dependent RNA polymerase 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 1963.7 bits (5086), Expect = 0.000e+0
Identity = 949/1115 (85.11%), Postives = 1038/1115 (93.09%), Query Frame = 1

		  

Query: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60
            MAIDRPTVER+T+++SNIP TATAQD+FDFLES IGK TIFA+EIFT+KKNWKSKGHGRV
Sbjct: 1    MAIDRPTVERTTLKISNIPLTATAQDLFDFLESTIGKATIFALEIFTDKKNWKSKGHGRV 60

Query: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120
            QFE+LD+KSKA +L+L+N+L F+G PLSLSSSHEDVVVRPI+P+ R   GD+YVGLM  E
Sbjct: 61   QFETLDAKSKATQLSLQNNLNFRGFPLSLSSSHEDVVVRPIDPNHRTKIGDLYVGLMSNE 120

Query: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180
            D MCVI+T E+   WVMPDR CV FH+E + K YK+EV FDDIFEAFGCYFD QSPAIL 
Sbjct: 121  DNMCVIETFENVTFWVMPDRGCVEFHVEFDEKLYKLEVQFDDIFEAFGCYFDPQSPAILF 180

Query: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240
            KLKYAPKIYQ+ISGPNL TRF+ADRYHICKEDLEF+WVRTTDIS   SIGLSSA CWEI 
Sbjct: 181  KLKYAPKIYQKISGPNLRTRFSADRYHICKEDLEFLWVRTTDISNKKSIGLSSAICWEIE 240

Query: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300
            EGSMGLDFFSTIPFY+K L +F+LEEYD+YSSVSGLVPLVKC N  KLDYEILFQINSLV
Sbjct: 241  EGSMGLDFFSTIPFYKKTLNSFILEEYDDYSSVSGLVPLVKCGNISKLDYEILFQINSLV 300

Query: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360
            HTLKISLA VTTELIDFL+TLS+D A M LQK+HK SSTCYEPLSFIKTQVQALD+A+++
Sbjct: 301  HTLKISLAAVTTELIDFLTTLSLDTALMALQKLHKFSSTCYEPLSFIKTQVQALDNARSN 360

Query: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420
            SL  RSRL NDNIMRCHRALVTPTKICLLGPELE+SNY+VKNF+A++SDFMRVTFVDEDW
Sbjct: 361  SLSARSRLKNDNIMRCHRALVTPTKICLLGPELESSNYVVKNFAAYSSDFMRVTFVDEDW 420

Query: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480
            G+LHP+ VS STEQGIFSKPFRTD+YHRILSILREGIVIG+KRFEFLAFSASQLRSNSVW
Sbjct: 421  GRLHPIVVSASTEQGIFSKPFRTDIYHRILSILREGIVIGNKRFEFLAFSASQLRSNSVW 480

Query: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540
            MFASNDKVKADDIREWMGSFNKIRS+SKCAARMGQLFSAA QT+VVPVQDVEVIPDI++N
Sbjct: 481  MFASNDKVKADDIREWMGSFNKIRSVSKCAARMGQLFSAARQTIVVPVQDVEVIPDIDIN 540

Query: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600
            +DGIDYCFSDGIGKISLSFARQVAQK GV+HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR
Sbjct: 541  TDGIDYCFSDGIGKISLSFARQVAQKYGVDHTPSAFQIRYGGYKGVIAVDRNSFRKLSLR 600

Query: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660
            SSMLKFESKNRMLNVTKC KSQ+CYLNREIVTLLTTL V+D  LEALLQ+HMRLL + LT
Sbjct: 601  SSMLKFESKNRMLNVTKCCKSQACYLNREIVTLLTTLEVKDDDLEALLQDHMRLLGSMLT 660

Query: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720
            SRDAALA+LESTDMG+SKTL KMLRHG+EPN+EPYLLMMLRAYLESQLSDLRGRCR+Y+P
Sbjct: 661  SRDAALAVLESTDMGDSKTLSKMLRHGYEPNAEPYLLMMLRAYLESQLSDLRGRCRIYIP 720

Query: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780
            KGRVLLGCLDETGILNYGQ+F R+TLRKTELEN+DPSIFHK+DEKTAILTG VVVTKNPC
Sbjct: 721  KGRVLLGCLDETGILNYGQVFARITLRKTELENVDPSIFHKVDEKTAILTGKVVVTKNPC 780

Query: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840
            LHPGDVRVLEAVYEVALEEKGL+DCLIFPQKGERPHPNECSGGDLDGDLYFISWDE+LIP
Sbjct: 781  LHPGDVRVLEAVYEVALEEKGLVDCLIFPQKGERPHPNECSGGDLDGDLYFISWDERLIP 840

Query: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900
            P+TV PMDY+  RPRIMDHDVT++EIQ+FFVDYMI+DTLGTISTAHLVLADREPEKALSP
Sbjct: 841  PKTVPPMDYSASRPRIMDHDVTLKEIQQFFVDYMINDTLGTISTAHLVLADREPEKALSP 900

Query: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960
            KCLRLA LHSMAVD+AK+GAPAEMP VLKPKEYPDFMERWD+PTYISQG+LGKLYRATV+
Sbjct: 901  KCLRLANLHSMAVDFAKSGAPAEMPRVLKPKEYPDFMERWDKPTYISQGVLGKLYRATVA 960

Query: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020
            +TIP SDF WSEETARAAYD DLEVPGFE FID AKSCKE+Y +KMS+LLMFYGAN+EDE
Sbjct: 961  STIPKSDFSWSEETARAAYDPDLEVPGFETFIDAAKSCKELYRDKMSVLLMFYGANTEDE 1020

Query: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080
            ILTGNLRSKS YL++DNRRYRELTDRIL+SVKSLQ EAKGWFENSC  +DRQKMASAWY 
Sbjct: 1021 ILTGNLRSKSAYLQRDNRRYRELTDRILVSVKSLQNEAKGWFENSCKVQDRQKMASAWYR 1080

Query: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            VTYHP HCHDS NCLGFPWTV DVL+TIKS NRKQ
Sbjct: 1081 VTYHPSHCHDSQNCLGFPWTVSDVLLTIKSDNRKQ 1115

BLAST of Spo04141.1 vs. NCBI nr
Match: gi|565356369|ref|XP_006345040.1| (PREDICTED: RNA-dependent RNA polymerase 2 [Solanum tuberosum])

HSP 1 Score: 1466.8 bits (3796), Expect = 0.000e+0
Identity = 714/1108 (64.44%), Postives = 874/1108 (78.88%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +TVRVSNIP +A A+D+FDF +S IGKG++FA +IF+E KNWKS+GHGRVQFE+L  K  
Sbjct: 9    ATVRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLH 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
               L+ + +LLFKG  LSL SS +D++ RP+EP CR   G ++ GL+ + D M V++T E
Sbjct: 69   CLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIYQ 190
            D K  +MP+R C+ F +    + Y++EV F D+ EA  C  + Q  A+LLKLK+APK+YQ
Sbjct: 129  DVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVVEATVCSLENQKSALLLKLKHAPKLYQ 188

Query: 191  RISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFFS 250
            R+SGP + ++F+ADRYHICKED EF+WVRTTD S   SIG SS+ CWE  +G +  D  S
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLS 248

Query: 251  TIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLADV 310
            ++P   K + +  L++  +  S S  VPLV+  ++LKL YEILFQ+NSLV T KISL  V
Sbjct: 249  SLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAV 308

Query: 311  TTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNSSLFVR-SRLT 370
              +LI+ LS L +D A M+LQK+HKL STC+EPL+FIKT++  L     + L    SRL 
Sbjct: 309  NPDLIEVLSKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLV 368

Query: 371  NDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVS 430
            N ++M  HR LVTP+KI  LGPELE SNYIVKNF+ H SDF+RVTFV+EDWGKL P AVS
Sbjct: 369  NHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVS 428

Query: 431  VSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVK 490
            +S EQGIF+KP+RT +YHRILSILREGIVIG KRF FLAFSASQLRSNSVWMFASN+ VK
Sbjct: 429  MSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVK 488

Query: 491  ADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCFS 550
            A+DIREWMG FNKIRSISKCAARMGQLFS + QT+ V +Q VE++PDIE+ SDG+ YCFS
Sbjct: 489  AEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFS 548

Query: 551  DGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFESK 610
            DGIGKIS +FARQVAQKCG+ HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFESK
Sbjct: 549  DGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESK 608

Query: 611  NRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALALL 670
            NRMLN+TK + +  CYLNREIV LL+TLGVED +LE LL  H+RLL   LT+ +AAL +L
Sbjct: 609  NRMLNITKWSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVL 668

Query: 671  ESTDMGE-SKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGC 730
            ES   G+  K L++ML  G+ PN EPYL MML+++ E+Q+SDLR RCR+++PKGR+L+GC
Sbjct: 669  ESMGGGDVKKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGC 728

Query: 731  LDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRV 790
            LDETGIL YG+++VR+T+ K EL+N   + F K+DE TA++ G VVVTKNPCLHPGDVRV
Sbjct: 729  LDETGILKYGEVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRV 788

Query: 791  LEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPMD 850
            LEAVYEV LEEK  +DC+IFPQ GERPHPNECSGGDLDGDLYFI WDE LIP +TV PMD
Sbjct: 789  LEAVYEVTLEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIPHQTVTPMD 848

Query: 851  YTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAEL 910
            YTG RPRIMDH+VT+EEIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+ KCL+LA L
Sbjct: 849  YTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATL 908

Query: 911  HSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATI-PSSD 970
            HSMAVD+AKTGA AEMP  LKP+E+PDFMERWD+P YIS+G+LGKLYR  + + I  +SD
Sbjct: 909  HSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSD 968

Query: 971  FKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLR 1030
               ++   + AYD DL V G+EAFI+TAK+ KEMY++ M+ LL +YGA  E EILTGNLR
Sbjct: 969  DLSTDRAIQDAYDHDLLVEGYEAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGNLR 1028

Query: 1031 SKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPDH 1090
             KS+YL++DNRRY EL DRIL+S KSL KE KGWF   C E+D QK+ SAWYHVTYHP +
Sbjct: 1029 QKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQKLVSAWYHVTYHPSY 1088

Query: 1091 CHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            CH+S NCLGFPW V D+L+ IKS N ++
Sbjct: 1089 CHESANCLGFPWVVGDILLNIKSHNTRK 1116

BLAST of Spo04141.1 vs. NCBI nr
Match: gi|970018979|ref|XP_015070676.1| (PREDICTED: RNA-dependent RNA polymerase 2 [Solanum pennellii])

HSP 1 Score: 1462.6 bits (3785), Expect = 0.000e+0
Identity = 715/1111 (64.36%), Postives = 875/1111 (78.76%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +TVRVSNIP +A A+D+F+F +S IGKG++FA +I +E KNWKS+GHGRVQFE+L  K  
Sbjct: 9    ATVRVSNIPQSAIAKDLFNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLH 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
               LA + +LLFKG  LSL SS +D++ RP+EP CR   G ++ GL+ E+D M V++T E
Sbjct: 69   CLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIYQ 190
            D K  +MP+R C+ F +    + Y++EV F D+ E   C  + Q  A+LLKLK+APK+YQ
Sbjct: 129  DVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSLENQKSALLLKLKHAPKLYQ 188

Query: 191  RISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFFS 250
            R+SGP + ++F+ADRYHICKED EF+W+RTTD S   SIG SS+ CWE  +G +  D FS
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFS 248

Query: 251  TIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLADV 310
            ++P   + + +  L++  +  S S  VPLV+  ++LKL YEILFQ+NSLV T KISL  +
Sbjct: 249  SLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAI 308

Query: 311  TTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQAL---DDAQNSSLFVRSR 370
               LI+ LS L +D A M+LQK+HKL S C++PL FIKT++  L   D  Q SS +  SR
Sbjct: 309  NPNLIEVLSKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNDKNQPSSSY--SR 368

Query: 371  LTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMA 430
            L N ++M  HR LVTP+KI  LGPELE SNYIVKNF+AH SDF+RVTFV+EDWGKL P A
Sbjct: 369  LVNHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAAHASDFLRVTFVEEDWGKLFPNA 428

Query: 431  VSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDK 490
            VS+S EQGIF+KP+RT +YHRILSILREGIVIG KRF FLAFSASQLRSNSVWMFASN+ 
Sbjct: 429  VSMSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEY 488

Query: 491  VKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYC 550
            VKA+DIREWMG FNKIRSISKCAARMGQLFS + QT+ V +Q VE++PDIE+ SDG+ YC
Sbjct: 489  VKAEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYC 548

Query: 551  FSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFE 610
            FSDGIGKIS +FARQVAQKCG+ HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFE
Sbjct: 549  FSDGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFE 608

Query: 611  SKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALA 670
            SKNRMLN+TK + +  CYLNREIV LL+TLGVED S E LL  H+ LL   LT+ +AAL 
Sbjct: 609  SKNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKSFEDLLDNHLCLLGKMLTTNEAALD 668

Query: 671  LLESTDMGE-SKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLL 730
            +LES   GE  K L++ML  G+ PN EPYL MML+++ E+Q+SDLR RCR+++PKGR+L+
Sbjct: 669  VLESMGGGEVKKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSRCRIFIPKGRILV 728

Query: 731  GCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDV 790
            GCLDETGIL YGQ++VR+T+ K EL+N   + F K+DE TA++ G VVVTKNPCLHPGDV
Sbjct: 729  GCLDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDV 788

Query: 791  RVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAP 850
            RVLEAVYEV LEEK  +DC+IFPQKGERPHPNECSGGDLDGDLYFI WDE LIP +TV P
Sbjct: 789  RVLEAVYEVTLEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICWDESLIPCQTVTP 848

Query: 851  MDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLA 910
            MDYTG RPRIMDH+VT+EEIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+ KCL+LA
Sbjct: 849  MDYTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLA 908

Query: 911  ELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATI-PS 970
             LHSMAVD+AKTGA AEMP  LKP+E+PDFMERWD+P YIS+G+LGKLYR  + + I  +
Sbjct: 909  TLHSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRKN 968

Query: 971  SDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGN 1030
            SD   ++   + AYD DL V G+EAF +TAK+ K MY++ M+ LL +YGA  E EILTGN
Sbjct: 969  SDDLSADRAIQDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNSLLNYYGAEKEVEILTGN 1028

Query: 1031 LRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHP 1090
            LR KS+YL++DNRRY EL DRIL+S KSL KE KGWF + C E+D QK+ASAWYHVTYHP
Sbjct: 1029 LRQKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQEDDHQKLASAWYHVTYHP 1088

Query: 1091 DHCHDSDNCLGFPWTVHDVLVTIKSANRKQP 1117
             +CH+S NCLGFPW V D+L+ IKS N ++P
Sbjct: 1089 SYCHESANCLGFPWVVGDILLNIKSHNTRKP 1117

BLAST of Spo04141.1 vs. NCBI nr
Match: gi|697138450|ref|XP_009623301.1| (PREDICTED: RNA-dependent RNA polymerase 2 [Nicotiana tomentosiformis])

HSP 1 Score: 1454.5 bits (3764), Expect = 0.000e+0
Identity = 704/1109 (63.48%), Postives = 880/1109 (79.35%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +TVRVSNIP TA A+ +FDF ES IGKG++FA +IF+E KNWKS+GHGRVQFE+  SK +
Sbjct: 9    ATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETAQSKLQ 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
            +  L+ +  L+FKG  L L+SS +D++ RPIEP+ R  +G ++ G++ + D M V++T E
Sbjct: 69   SLSLSEQGKLVFKGHQLILTSSFDDIIARPIEPNYRFQKGILHTGVLLKNDYMEVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLE-LEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIY 190
            + K  +MP+R  + F +   +G+ Y++EV F DI E  GC  +++ PA+LLKLK+APK+Y
Sbjct: 129  NVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCGCSLEDEKPALLLKLKHAPKLY 188

Query: 191  QRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFF 250
            QR+SGP + ++F++DRYH+CKED EF+WVRTTD S   SIG SS+ CWEI +G +  D  
Sbjct: 189  QRVSGPGVASKFSSDRYHVCKEDCEFLWVRTTDFSAMKSIGCSSSLCWEIEDGLLSSDLL 248

Query: 251  STIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLAD 310
            S++P+    + + VL+E  +  S S LVPL    ++LKL YEILFQ+NSLVHT KISL  
Sbjct: 249  SSLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLVHTHKISLGA 308

Query: 311  VTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALD-DAQNSSLFVRSRL 370
            V T+LI+ LS L +D A M+LQK+HKL S+C+EP+ FIKT++  L  +++N      SRL
Sbjct: 309  VKTDLIEVLSKLELDTAMMILQKMHKLQSSCFEPVPFIKTRLHVLGKNSKNQPSSSYSRL 368

Query: 371  TNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAV 430
             N N+M  HR LVTP+K+  LGPELE SNYIVKNF++H SDF+RVTFV+EDW KL P A+
Sbjct: 369  VNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWSKLSPNAI 428

Query: 431  SVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKV 490
            S+S EQGIF+KP+RT +YHRILSILR+G+VIG KRF FLAFSASQLRSNSVWMFASN+ V
Sbjct: 429  SISVEQGIFAKPYRTKIYHRILSILRDGLVIGTKRFLFLAFSASQLRSNSVWMFASNEYV 488

Query: 491  KADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCF 550
            KA+DIREWMG FNKIRS+SKCAARMGQLFS ++QT+ V    VE++PDIE+ SDG+ YCF
Sbjct: 489  KAEDIREWMGYFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCF 548

Query: 551  SDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFES 610
            SDGIGKIS +FA QVAQKCG+ +TPSAFQIRYGGYKGV+AVDRNS+RKLSLR SMLKFES
Sbjct: 549  SDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSYRKLSLRGSMLKFES 608

Query: 611  KNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALAL 670
            KN+MLN+TK + +  CYLNREIV LL TLGVED  LE LL  H+ LL   LT+ +AAL +
Sbjct: 609  KNKMLNITKWSDAMPCYLNREIVILLATLGVEDKVLEDLLDNHLHLLGKMLTTNEAALDV 668

Query: 671  LESTDMGESK-TLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLG 730
            LES   G+ K  L++ML  G+ PN EPYL MML+++ E+QLSDLR RCR+++PKGRVL+G
Sbjct: 669  LESIGGGDVKRILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIPKGRVLVG 728

Query: 731  CLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVR 790
            CLDETGILNYGQ++ R+T+ K EL++   + F K+DE TA++ G VVVTKNPCLHPGDVR
Sbjct: 729  CLDETGILNYGQVYARITMTKAELQSGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVR 788

Query: 791  VLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPM 850
            VLEAVYEVALEEK  +DC+IFPQKGERPHPNECSGGDLDGDLYFISWDE LIP +TV PM
Sbjct: 789  VLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPM 848

Query: 851  DYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAE 910
            DYTG +PRIMDH+VT+EEIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+PKCL+LA 
Sbjct: 849  DYTGRKPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLAT 908

Query: 911  LHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATI-PSS 970
            LHSMAVD+AKTGA AEMP  LKP+E+PDF+ERWD+P YIS+G+LGKLYRA V +++  +S
Sbjct: 909  LHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVKSSVRGNS 968

Query: 971  DFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNL 1030
            D   S    + AYD DL   G+EAFI TAK+ KEMY+++M+ LL +YGA  E EILTGNL
Sbjct: 969  DDLGSVRAIQDAYDHDLLFEGYEAFIVTAKNHKEMYLDRMNSLLNYYGAEKEVEILTGNL 1028

Query: 1031 RSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPD 1090
            R KS+YL++DNRRY EL DRIL+S KSLQKE KGWF   C E++++K+ASAWY VTYHP 
Sbjct: 1029 RQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEKKKLASAWYQVTYHPS 1088

Query: 1091 HCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            +C  S NCLGFPW V DVL+ IK  N ++
Sbjct: 1089 YCQGSANCLGFPWVVGDVLLDIKLHNTRK 1117

BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCQ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081360 PE=4 SV=1)

HSP 1 Score: 2255.3 bits (5843), Expect = 0.000e+0
Identity = 1116/1116 (100.00%), Postives = 1116/1116 (100.00%), Query Frame = 1

		  

Query: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60
            MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV
Sbjct: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60

Query: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120
            QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE
Sbjct: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120

Query: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180
            DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL
Sbjct: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180

Query: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240
            KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG
Sbjct: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240

Query: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300
            EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV
Sbjct: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300

Query: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360
            HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS
Sbjct: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360

Query: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420
            SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW
Sbjct: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420

Query: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480
            GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW
Sbjct: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480

Query: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540
            MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN
Sbjct: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540

Query: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600
            SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR
Sbjct: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600

Query: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660
            SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT
Sbjct: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660

Query: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720
            SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP
Sbjct: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720

Query: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780
            KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC
Sbjct: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780

Query: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840
            LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP
Sbjct: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840

Query: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900
            PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP
Sbjct: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900

Query: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960
            KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS
Sbjct: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960

Query: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020
            ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE
Sbjct: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020

Query: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080
            ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH
Sbjct: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080

Query: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP 1117
            VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP
Sbjct: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQP 1116

BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAC7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116660 PE=4 SV=1)

HSP 1 Score: 1963.7 bits (5086), Expect = 0.000e+0
Identity = 949/1115 (85.11%), Postives = 1038/1115 (93.09%), Query Frame = 1

		  

Query: 1    MAIDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRV 60
            MAIDRPTVER+T+++SNIP TATAQD+FDFLES IGK TIFA+EIFT+KKNWKSKGHGRV
Sbjct: 1    MAIDRPTVERTTLKISNIPLTATAQDLFDFLESTIGKATIFALEIFTDKKNWKSKGHGRV 60

Query: 61   QFESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEE 120
            QFE+LD+KSKA +L+L+N+L F+G PLSLSSSHEDVVVRPI+P+ R   GD+YVGLM  E
Sbjct: 61   QFETLDAKSKATQLSLQNNLNFRGFPLSLSSSHEDVVVRPIDPNHRTKIGDLYVGLMSNE 120

Query: 121  DQMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILL 180
            D MCVI+T E+   WVMPDR CV FH+E + K YK+EV FDDIFEAFGCYFD QSPAIL 
Sbjct: 121  DNMCVIETFENVTFWVMPDRGCVEFHVEFDEKLYKLEVQFDDIFEAFGCYFDPQSPAILF 180

Query: 181  KLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIG 240
            KLKYAPKIYQ+ISGPNL TRF+ADRYHICKEDLEF+WVRTTDIS   SIGLSSA CWEI 
Sbjct: 181  KLKYAPKIYQKISGPNLRTRFSADRYHICKEDLEFLWVRTTDISNKKSIGLSSAICWEIE 240

Query: 241  EGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLV 300
            EGSMGLDFFSTIPFY+K L +F+LEEYD+YSSVSGLVPLVKC N  KLDYEILFQINSLV
Sbjct: 241  EGSMGLDFFSTIPFYKKTLNSFILEEYDDYSSVSGLVPLVKCGNISKLDYEILFQINSLV 300

Query: 301  HTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNS 360
            HTLKISLA VTTELIDFL+TLS+D A M LQK+HK SSTCYEPLSFIKTQVQALD+A+++
Sbjct: 301  HTLKISLAAVTTELIDFLTTLSLDTALMALQKLHKFSSTCYEPLSFIKTQVQALDNARSN 360

Query: 361  SLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDW 420
            SL  RSRL NDNIMRCHRALVTPTKICLLGPELE+SNY+VKNF+A++SDFMRVTFVDEDW
Sbjct: 361  SLSARSRLKNDNIMRCHRALVTPTKICLLGPELESSNYVVKNFAAYSSDFMRVTFVDEDW 420

Query: 421  GKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVW 480
            G+LHP+ VS STEQGIFSKPFRTD+YHRILSILREGIVIG+KRFEFLAFSASQLRSNSVW
Sbjct: 421  GRLHPIVVSASTEQGIFSKPFRTDIYHRILSILREGIVIGNKRFEFLAFSASQLRSNSVW 480

Query: 481  MFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELN 540
            MFASNDKVKADDIREWMGSFNKIRS+SKCAARMGQLFSAA QT+VVPVQDVEVIPDI++N
Sbjct: 481  MFASNDKVKADDIREWMGSFNKIRSVSKCAARMGQLFSAARQTIVVPVQDVEVIPDIDIN 540

Query: 541  SDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLR 600
            +DGIDYCFSDGIGKISLSFARQVAQK GV+HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR
Sbjct: 541  TDGIDYCFSDGIGKISLSFARQVAQKYGVDHTPSAFQIRYGGYKGVIAVDRNSFRKLSLR 600

Query: 601  SSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLT 660
            SSMLKFESKNRMLNVTKC KSQ+CYLNREIVTLLTTL V+D  LEALLQ+HMRLL + LT
Sbjct: 601  SSMLKFESKNRMLNVTKCCKSQACYLNREIVTLLTTLEVKDDDLEALLQDHMRLLGSMLT 660

Query: 661  SRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVP 720
            SRDAALA+LESTDMG+SKTL KMLRHG+EPN+EPYLLMMLRAYLESQLSDLRGRCR+Y+P
Sbjct: 661  SRDAALAVLESTDMGDSKTLSKMLRHGYEPNAEPYLLMMLRAYLESQLSDLRGRCRIYIP 720

Query: 721  KGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPC 780
            KGRVLLGCLDETGILNYGQ+F R+TLRKTELEN+DPSIFHK+DEKTAILTG VVVTKNPC
Sbjct: 721  KGRVLLGCLDETGILNYGQVFARITLRKTELENVDPSIFHKVDEKTAILTGKVVVTKNPC 780

Query: 781  LHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIP 840
            LHPGDVRVLEAVYEVALEEKGL+DCLIFPQKGERPHPNECSGGDLDGDLYFISWDE+LIP
Sbjct: 781  LHPGDVRVLEAVYEVALEEKGLVDCLIFPQKGERPHPNECSGGDLDGDLYFISWDERLIP 840

Query: 841  PRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSP 900
            P+TV PMDY+  RPRIMDHDVT++EIQ+FFVDYMI+DTLGTISTAHLVLADREPEKALSP
Sbjct: 841  PKTVPPMDYSASRPRIMDHDVTLKEIQQFFVDYMINDTLGTISTAHLVLADREPEKALSP 900

Query: 901  KCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVS 960
            KCLRLA LHSMAVD+AK+GAPAEMP VLKPKEYPDFMERWD+PTYISQG+LGKLYRATV+
Sbjct: 901  KCLRLANLHSMAVDFAKSGAPAEMPRVLKPKEYPDFMERWDKPTYISQGVLGKLYRATVA 960

Query: 961  ATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDE 1020
            +TIP SDF WSEETARAAYD DLEVPGFE FID AKSCKE+Y +KMS+LLMFYGAN+EDE
Sbjct: 961  STIPKSDFSWSEETARAAYDPDLEVPGFETFIDAAKSCKELYRDKMSVLLMFYGANTEDE 1020

Query: 1021 ILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYH 1080
            ILTGNLRSKS YL++DNRRYRELTDRIL+SVKSLQ EAKGWFENSC  +DRQKMASAWY 
Sbjct: 1021 ILTGNLRSKSAYLQRDNRRYRELTDRILVSVKSLQNEAKGWFENSCKVQDRQKMASAWYR 1080

Query: 1081 VTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            VTYHP HCHDS NCLGFPWTV DVL+TIKS NRKQ
Sbjct: 1081 VTYHPSHCHDSQNCLGFPWTVSDVLLTIKSDNRKQ 1115

BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IXZ5_SOLCH (Putative RNA-dependent RNA polymerase 2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 1465.3 bits (3792), Expect = 0.000e+0
Identity = 714/1108 (64.44%), Postives = 874/1108 (78.88%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +T+RVSNIP +A A+D+FDF +S IGKG++FA +IF+E KNWKS+GHGRVQFE+L  K  
Sbjct: 9    ATLRVSNIPQSAIAKDLFDFFDSLIGKGSVFACDIFSEHKNWKSRGHGRVQFETLQDKLH 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
               L+ + +LLFKG  LSL SS +D++ RP+EP CR   G ++ GL+ + D M V++T E
Sbjct: 69   CLSLSEQGNLLFKGHQLSLVSSFDDIIARPVEPKCRFQDGILHTGLLVKNDVMQVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIYQ 190
            D K  +MP+R C+ F +    + Y++EV F D+ EA  C  + Q  A+LLKLK+APK+YQ
Sbjct: 129  DVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVAEATVCSLENQKSALLLKLKHAPKLYQ 188

Query: 191  RISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFFS 250
            R+SGP + ++F+ADRYHICKED EF+WVRTTD S   SIG SS+ CWE  +G +  D  S
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWVRTTDFSNIKSIGCSSSLCWETEDGWLSSDLLS 248

Query: 251  TIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLADV 310
            ++P   K + +  L++  +  S S  VPLV+  ++LKL YEILFQ+NSLV T KISL  V
Sbjct: 249  SLPCCNKDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAV 308

Query: 311  TTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNSSLFVR-SRLT 370
              +LI+ LS L +D A M+LQK+HKL STC+EPL+FIKT++  L     + L    SRL 
Sbjct: 309  NPDLIEVLSKLELDTAMMILQKMHKLQSTCFEPLTFIKTRLHVLGKNNKNQLSSSYSRLV 368

Query: 371  NDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVS 430
            N ++M  HR LVTP+KI  LGPELE SNYIVKNF+ H SDF+RVTFV+EDWGKL P AVS
Sbjct: 369  NHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFAEHASDFLRVTFVEEDWGKLFPNAVS 428

Query: 431  VSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVK 490
            +S EQGIF+KP+RT +YHRILSILREGIVIG KRF FLAFSASQLRSNSVWMFASN+ VK
Sbjct: 429  MSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVK 488

Query: 491  ADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCFS 550
            A+DIREWMG FNKIRSISKCAARMGQLFS + QT+ V +Q VE++PDIE+ SDG+ YCFS
Sbjct: 489  AEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVQLQHVEILPDIEVTSDGVSYCFS 548

Query: 551  DGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFESK 610
            DGIGKIS +FARQVAQKCG+ HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFESK
Sbjct: 549  DGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESK 608

Query: 611  NRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALALL 670
            NRMLN+TK + +  CYLNREIV LL+TLGVED +LE LL  H+RLL   LT+ +AAL +L
Sbjct: 609  NRMLNITKWSDAMPCYLNREIVILLSTLGVEDKALEDLLDNHLRLLGKMLTTNEAALDVL 668

Query: 671  ESTDMGE-SKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGC 730
            ES   G+  K L++ML  G+ PN EPYL MML+++ E+Q+SDLR RCR+++PKGR+L+GC
Sbjct: 669  ESMGGGDVKKILMRMLLQGYAPNREPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGC 728

Query: 731  LDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRV 790
            LDETGIL YGQ++VR+T+ K EL+N   + F K+DE TA++ G VVVTKNPCLHPGDVRV
Sbjct: 729  LDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRV 788

Query: 791  LEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPMD 850
            LEAVYEV LEEK  +DC+IFPQ GERPHPNECSGGDLDGDLYFI WDE LIP +TV PMD
Sbjct: 789  LEAVYEVTLEEKTWVDCIIFPQNGERPHPNECSGGDLDGDLYFICWDESLIPHQTVTPMD 848

Query: 851  YTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAEL 910
            YTG RPRIMDH+VT+EEIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+ KCL+LA L
Sbjct: 849  YTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATL 908

Query: 911  HSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATI-PSSD 970
            HSMAVD+AKTGA AEMP  LKP+E+PDFMERWD+P YIS+G+LGKLYR  + + I  +SD
Sbjct: 909  HSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVIKSYIRRNSD 968

Query: 971  FKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLR 1030
               ++   + AYD DL V G+ AFI+TAK+ KEMY++ M+ LL +YGA  E EILTGNLR
Sbjct: 969  DLSTDRAIQDAYDHDLLVEGYGAFIETAKTHKEMYLDSMNSLLNYYGAEKEVEILTGNLR 1028

Query: 1031 SKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPDH 1090
             KS+YL++DNRRY EL DRIL+S KSL KE KGWF   C E+D QK+ASAWYHVTYHP +
Sbjct: 1029 QKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFSGCCTEDDHQKLASAWYHVTYHPSY 1088

Query: 1091 CHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            CH+S NCLGFPW V D+L+ IKS N ++
Sbjct: 1089 CHESANCLGFPWVVGDILLNIKSHNTRK 1116

BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Match: K4BKR6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 1449.9 bits (3752), Expect = 0.000e+0
Identity = 707/1108 (63.81%), Postives = 871/1108 (78.61%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +TVRVSNIP +A A+D+ +F +S IGKG++FA +I +E KNWKS+GHGRVQFE+L  K  
Sbjct: 9    ATVRVSNIPQSAIAKDLSNFFDSLIGKGSVFACDIHSEHKNWKSRGHGRVQFETLQDKLH 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
               LA + +LLFKG  LSL SS +D++ RP+EP CR   G ++ GL+ E+D M V++T E
Sbjct: 69   CLSLAEQGNLLFKGHQLSLVSSFDDIITRPVEPKCRFQAGILHTGLLVEKDVMQVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIYQ 190
            D K  +MP+R C+ F +    + Y++EV F D+ E   C  + Q  A+LLKLK+APK+YQ
Sbjct: 129  DVKTLIMPERKCLEFWVSHAEECYRLEVQFGDVTEGTLCSVENQKSALLLKLKHAPKLYQ 188

Query: 191  RISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFFS 250
            R+SGP + ++F+ADRYHICKED EF+W+RTTD S   SIG SS+ CWE  +G +  D FS
Sbjct: 189  RVSGPAVASKFSADRYHICKEDCEFLWIRTTDFSNIKSIGCSSSLCWETEDGWLSSDLFS 248

Query: 251  TIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLADV 310
            ++P   + + +  L++  +  S S  VPLV+  ++LKL YEILFQ+NSLV T KISL  +
Sbjct: 249  SLPCCNQDVIDLDLDKVGDIYSGSEFVPLVRIPSDLKLPYEILFQLNSLVQTQKISLGAI 308

Query: 311  TTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALD-DAQNSSLFVRSRLT 370
               LI+ LS L +D A M+LQK+HKL S C++PL FIKT++  L  + +N      SRL 
Sbjct: 309  NPNLIEVLSKLELDTAMMILQKMHKLQSICFDPLLFIKTRLHVLGKNNKNRPSSSYSRLV 368

Query: 371  NDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVS 430
            N ++M  HR LVTP+KI  LGPELE SNYIVKNF++H SDF+RVTFV+EDWGKL P AVS
Sbjct: 369  NHSMMSVHRVLVTPSKIYCLGPELETSNYIVKNFASHASDFLRVTFVEEDWGKLFPNAVS 428

Query: 431  VSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVK 490
            +S EQGIF+KP+RT +YHRILSILREGIVIG KRF FLAFSASQLRSNSVWMFASN+ VK
Sbjct: 429  MSVEQGIFAKPYRTKIYHRILSILREGIVIGTKRFFFLAFSASQLRSNSVWMFASNEYVK 488

Query: 491  ADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCFS 550
            A+DIREWMG FNKIRSISKCAARMGQLFS + QT+ V +Q VE++PDIE+ SDG+ YCFS
Sbjct: 489  AEDIREWMGCFNKIRSISKCAARMGQLFSTSVQTMEVKLQHVEILPDIEVTSDGVSYCFS 548

Query: 551  DGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFESK 610
            DGIGKIS +FARQVAQKCG+ HTPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFESK
Sbjct: 549  DGIGKISQAFARQVAQKCGLNHTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESK 608

Query: 611  NRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALALL 670
            NRMLN+TK + +  CYLNREIV LL+TLGVED + E LL  H+ LL   LT+ +AAL +L
Sbjct: 609  NRMLNITKWSDAMPCYLNREIVILLSTLGVEDKAFEDLLDNHLCLLGKMLTTNEAALDVL 668

Query: 671  ESTDMGE-SKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGC 730
            ES   GE  K L++ML  G+ PN EPYL MML+++ E+Q+SDLR RCR+++PKGR+L+GC
Sbjct: 669  ESMGGGEVKKILMRMLLQGYAPNQEPYLSMMLQSHFENQISDLRSRCRIFIPKGRILVGC 728

Query: 731  LDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRV 790
            LDETGIL YGQ++VR+T+ K EL+N   + F K+DE TA++ G VVVTKNPCLHPGDVRV
Sbjct: 729  LDETGILKYGQVYVRITMTKAELQNGQQNFFQKVDETTAVVRGKVVVTKNPCLHPGDVRV 788

Query: 791  LEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPMD 850
            LEAVYEV LEEK  +DC+IFPQKGERPHPNECSGGDLDGDLYFI WDE LIP +TV PMD
Sbjct: 789  LEAVYEVTLEEKTWVDCIIFPQKGERPHPNECSGGDLDGDLYFICWDESLIPCQTVTPMD 848

Query: 851  YTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAEL 910
            YTG RPRIMDH+VT+EEIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+ KCL+LA L
Sbjct: 849  YTGRRPRIMDHEVTLEEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNSKCLQLATL 908

Query: 911  HSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATI-PSSD 970
            HSMAVD+AKTGA AEMP  LKP+E+PDFMERWD+P YIS+G+LGKLYR  + + I  +SD
Sbjct: 909  HSMAVDFAKTGAAAEMPRFLKPREFPDFMERWDKPMYISEGVLGKLYRGVMKSYIRRNSD 968

Query: 971  FKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLR 1030
               ++   + AYD DL V G+EAF +TAK+ K MY++ M+ LL +YGA  E EILTGNLR
Sbjct: 969  DLSADRAIQDAYDHDLLVEGYEAFTETAKTHKAMYLDSMNSLLNYYGAEKEVEILTGNLR 1028

Query: 1031 SKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPDH 1090
             KS+YL++DNRRY EL DRIL+S KSL KE KGWF + C E+D QK+ASAWYHVTYHP +
Sbjct: 1029 QKSVYLQRDNRRYFELKDRILVSAKSLHKEVKGWFTSCCQEDDHQKLASAWYHVTYHPSY 1088

Query: 1091 CHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            CH+S NCLGFPW V D+L+ +KS N ++
Sbjct: 1089 CHESANCLGFPWVVGDILLNMKSHNTRK 1116

BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Match: Q647I4_NICBE (Putative RNA-dependent RNA polymerase RdRP2 OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 1442.6 bits (3733), Expect = 0.000e+0
Identity = 701/1109 (63.21%), Postives = 874/1109 (78.81%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSK 70
            +TVRVSNIP TA A+ +FDF ES IGKG++FA +IF+E KNWKS+GHGRVQFE+  SK +
Sbjct: 9    ATVRVSNIPQTAIAKQLFDFFESSIGKGSVFACDIFSEHKNWKSRGHGRVQFETSQSKLQ 68

Query: 71   AQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDTLE 130
            +  L+ +  L+FKG  L L+SS +D++ RPIE + R  +G ++ G++ E D M V++T E
Sbjct: 69   SLSLSEQGKLVFKGHQLILTSSFDDIIARPIELNYRFQKGILHTGILLENDYMEVLETWE 128

Query: 131  DAKIWVMPDRNCVVFHLE-LEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKIY 190
            + K  +MP+R  + F +   +G+ Y++EV F DI E   C  +++  A+LLKLK+APK+Y
Sbjct: 129  NVKTLIMPERKSLEFWVSHAKGECYRLEVQFGDIIETCECSLEDEKTALLLKLKHAPKLY 188

Query: 191  QRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDFF 250
            QR+SGP + ++F++DRYH+C+ED EF+WVRTTD S   SIG SS+ CWEI +G +  D  
Sbjct: 189  QRVSGPGVASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLL 248

Query: 251  STIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLAD 310
            S +P+    + + VL+E  +  S S LVPL    ++LKL YEILFQ+NSL+HT KISL  
Sbjct: 249  SGLPYCNNDVMDLVLDEVGDIYSASELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGA 308

Query: 311  VTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALD-DAQNSSLFVRSRL 370
            V T+LI+ LS L +D A M+LQK+HKL STC+EP+ FIKT++  L  +++N      SRL
Sbjct: 309  VKTDLIEVLSKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRL 368

Query: 371  TNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAV 430
             N N+M  HR LVTP+K+  LGPELE SNYIVKNF+ H SDF+RVTFV+EDWGKL P A+
Sbjct: 369  VNQNMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAI 428

Query: 431  SVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKV 490
            S+S EQGIF+KP+RT +YHRILSILR+G+VIG KRF FLAFSASQLRSNSVWMFASN+ V
Sbjct: 429  SMSVEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHV 488

Query: 491  KADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCF 550
            KA+DIREWMG FNKIRS+SKCAARMGQLFS ++QT+ V    VE++PDIE+ SDG+ YCF
Sbjct: 489  KAEDIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCF 548

Query: 551  SDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFES 610
            SDGIGKIS +FA QVAQKCG+ +TPSAFQIRYGGYKGV+AVDRNSFRKLSLR SMLKFES
Sbjct: 549  SDGIGKISQAFASQVAQKCGLSYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFES 608

Query: 611  KNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALAL 670
            KNRMLN+TK + +  CYLNREIV LL+TLGVED   E LL  H+ LL   LT+ +AAL +
Sbjct: 609  KNRMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDV 668

Query: 671  LESTDMGE-SKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLG 730
            LES   G+  K L++ML  G+ PN EPYL MML+++ E+QLSDLR RCR+++ KGRVL+G
Sbjct: 669  LESIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVG 728

Query: 731  CLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVR 790
            CLDETGILNYGQ++ R+T+ K EL++   S F K+DE TA++ G VVVTKNPCLHPGDVR
Sbjct: 729  CLDETGILNYGQVYARITMTKAELQSAQQSFFQKVDETTAVVRGNVVVTKNPCLHPGDVR 788

Query: 791  VLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPM 850
            VLEAVYEVALEEK  +DC+IFPQKGERPHPNECSGGDLDGDLYFISWDE LIP +TV PM
Sbjct: 789  VLEAVYEVALEEKAWVDCIIFPQKGERPHPNECSGGDLDGDLYFISWDENLIPRQTVTPM 848

Query: 851  DYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAE 910
            DYTG R RIMDH+VT++EIQRFFVDYMISDTLG ISTAHLV ADREP+KAL+PKCL+LA 
Sbjct: 849  DYTGRRTRIMDHEVTLQEIQRFFVDYMISDTLGAISTAHLVHADREPDKALNPKCLQLAT 908

Query: 911  LHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATIPS-S 970
            LHSMAVD+AKTGA AEMP  LKP+E+PDF+ERWD+P YIS+G+LGKLYRA V++++ S S
Sbjct: 909  LHSMAVDFAKTGAAAEMPRFLKPREFPDFLERWDKPMYISEGVLGKLYRAIVNSSVRSNS 968

Query: 971  DFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNL 1030
            D   S    + AYD  L   G+EAFI+TAK+ KE Y+++M+ LL +YGA  E EILTGNL
Sbjct: 969  DDLGSVRAIQDAYDHALLFDGYEAFIETAKNHKETYLDRMNSLLNYYGAEKEVEILTGNL 1028

Query: 1031 RSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVTYHPD 1090
            R KS+YL++DNRRY EL DRIL+S KSLQKE KGWF   C E++ +K+ASAWYHVTYHP 
Sbjct: 1029 RQKSVYLQRDNRRYFELKDRILVSAKSLQKEVKGWFTGCCKEDEHKKLASAWYHVTYHPS 1088

Query: 1091 HCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            +C  S NCLGFPW V D+L+ IK  N ++
Sbjct: 1089 YCEGSANCLGFPWVVGDILLDIKLHNTRK 1117

BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Match: RDR2_ARATH (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana GN=RDR2 PE=1 SV=1)

HSP 1 Score: 1291.2 bits (3340), Expect = 0.000e+0
Identity = 639/1122 (56.95%), Postives = 837/1122 (74.60%), Query Frame = 1

		  

Query: 3    IDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQF 62
            +   T  RSTV++SN+P T  A ++  FLE  +G+ T+FA+EI T + NWK +   RVQF
Sbjct: 2    VSETTTNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQF 61

Query: 63   ESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMK-EED 122
             +L+ KS+AQ L+ ++ LLFK   L LS +++D++ RP++P  R     + VG  + +E 
Sbjct: 62   TTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEK 121

Query: 123  QMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFD---EQSPAI 182
            + C ++  +  + W++ ++  V F +   G  YK+EV F+DI E   C  +    +  A 
Sbjct: 122  RFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAF 181

Query: 183  LLKLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWE 242
            LLKLKY PK+++R++  ++ T+F +DRY  CKED +F+W+RTTD S S SIG S+ FC E
Sbjct: 182  LLKLKYGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 241

Query: 243  IGEGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCEN-NLKLDYEILFQIN 302
            +  GS  LD FS +P+YR+   +    +   ++S + +VPL+      L+  YEILFQ+N
Sbjct: 242  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 301

Query: 303  SLVHTLKISL-ADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQAL-D 362
            +LVH  KISL A    ELI  L  +S++ A ++L+K+H+ SS CY+P+ F+KTQ+Q++  
Sbjct: 302  ALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVK 361

Query: 363  DAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTF 422
              ++S      RLT  NIM C RA VTP+KI LLGPELE +NY+VKNF+ H SDFMRVTF
Sbjct: 362  KMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTF 421

Query: 423  VDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLR 482
            V+EDW KL   A+SV++++G F KP RT++Y+R+LSIL EGI +G KRFEFLAFSASQLR
Sbjct: 422  VEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLR 481

Query: 483  SNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIP 542
             NSVWMFASN+KVKA+DIREWMG F KIRSISKCAARMGQLFSA+ QT++V  QDVE IP
Sbjct: 482  GNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIP 541

Query: 543  DIELNSDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFR 602
            DIE+ +DG DYCFSDGIGKISL+FA+QVAQKCG+ H PSAFQIRYGGYKGV+AVDR+SFR
Sbjct: 542  DIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFR 601

Query: 603  KLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLL 662
            KLSLR SMLKF+S NRMLNVT+  +S  C+LNREI+ LL+TLG+ED+  EA+   H+ +L
Sbjct: 602  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 661

Query: 663  ANTLTSRDAALALLESTDMGESKT-LVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGR 722
             N L  RDAAL +L+      SK  LVKML  G+ P+SEPYL MMLR + ESQLS+L+ R
Sbjct: 662  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 721

Query: 723  CRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVV 782
            CR+ VPKGR+L+GC+DE GIL YGQ++VR+TL K EL++ D S F K+DE+T+++ G VV
Sbjct: 722  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVV 781

Query: 783  VTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISW 842
            VTKNPCLHPGD+RVL+A+YEV  EEKG +DC+IFPQKGERPHPNECSGGDLDGD +F+SW
Sbjct: 782  VTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSW 841

Query: 843  DEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREP 902
            DEK+IP     PMDY G RPR+MDHDVT+EEI +FFVDYMISDTLG ISTAHLV ADR+P
Sbjct: 842  DEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDP 901

Query: 903  EKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKL 962
            EKA S KCL LA LHS AVD+AKTGAPAEMP  LKP+E+PDF+ER+++PTYIS+ + GKL
Sbjct: 902  EKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKL 961

Query: 963  YRATVSATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYG 1022
            YRA  S+         SE+T   AYD  LE  GFE+FI+TAK+ ++MY EK++ L+++YG
Sbjct: 962  YRAVKSSLAQRKPEAESEDT--VAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1021

Query: 1023 ANSEDEILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSC-GEEDRQK 1082
            A +E+EILTG L++K +YL +DNRRY ++ DRI +SVK L KEA GWFE SC  E+ ++K
Sbjct: 1022 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKK 1081

Query: 1083 MASAWYHVTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            +ASAWY+VTY+P+H  +    L FPW V DVL+ IK+ N ++
Sbjct: 1082 LASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120

BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Match: RDR2_ORYSJ (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica GN=RDR2 PE=2 SV=1)

HSP 1 Score: 1108.2 bits (2865), Expect = 0.000e+0
Identity = 567/1111 (51.04%), Postives = 754/1111 (67.87%), Query Frame = 1

		  

Query: 11   STVRVSNIPTTATAQDIFDFLESKIG-KGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKS 70
            +++RVSNIP +A A ++  F +S +   G  FA EI    + W S+GHG VQF S  + +
Sbjct: 10   ASLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAA 69

Query: 71   KAQELALENDL-LFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMKEEDQMCVIDT 130
             A  LA    L  F G  LS+S S  D++ R  + S R     + VG    E      D 
Sbjct: 70   AAAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADA 129

Query: 131  LEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFDEQSPAILLKLKYAPKI 190
             +  +  V+P +  V  +LE + + YK+EV F+D+ +  GC  D    AILL+L YAP+I
Sbjct: 130  WDGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMG-AILLQLNYAPRI 189

Query: 191  YQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWEIGEGSMGLDF 250
            +  ISGP + +RF  DR+H CKED +F WVR  D + + S G  S    ++G+ ++  D 
Sbjct: 190  HTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDI 249

Query: 251  FSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCENNLKLDYEILFQINSLVHTLKISLA 310
              ++PF   + E   +   D   + S +VPLV C  +  + YE+LF++NSL+H  KI   
Sbjct: 250  LKSLPFSGNLGE-LTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAK 309

Query: 311  DVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQALDDAQNSSLFVRSRL 370
             V  +L   L  L +D +  + +K+HKL STCY PL FI+ +  ++  + N  L      
Sbjct: 310  HVNADLFKALQELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHNVLLSNEGEG 369

Query: 371  TNDN-IMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMA 430
              +  +M+C+R  +TP+KI   GPE E +NY+VK+ SA+ SDF+RVTFVDEDW KL   A
Sbjct: 370  EGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSNA 429

Query: 431  VSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDK 490
            +S   EQG FSKPF+T +Y+RILSIL++G  IG K FEFLAFSASQLR NSVWMFASN  
Sbjct: 430  ISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNAS 489

Query: 491  VKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYC 550
            + A  IR WMG F  IRS+SKCAARMGQLFS++ QT  V   DVEVIPDIE+ +DG  Y 
Sbjct: 490  LNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKYI 549

Query: 551  FSDGIGKISLSFARQVAQKCGVEHT--PSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLK 610
            FSDGIGKISL FA++VA   G++ T  PSAFQIRYGGYKGV+A+D  S   LSLR SM K
Sbjct: 550  FSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMKK 609

Query: 611  FESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAA 670
            FES++RMLN+T  +KSQ CY+NREI++LL+TLG+ D    A+ Q+ MR     LT+++ A
Sbjct: 610  FESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEVA 669

Query: 671  LALLESTDMGESKTLVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVL 730
            L++L      E+KT VKML  G+EP+SEPYL M+L+A+ E++L+D+R RC+++VPKGRVL
Sbjct: 670  LSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGRVL 729

Query: 731  LGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGD 790
            +GCLDETG+L YGQ+++R+T    E ++ + S F+  D KTA + G V +TKNPCLHPGD
Sbjct: 730  IGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAITKNPCLHPGD 789

Query: 791  VRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVA 850
            +RVLEA+Y+  L   G++DCL+FPQ+GERPHPNECSGGDLDGDLYFI+WD+KLIP +   
Sbjct: 790  IRVLEAIYDPDLV--GMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKVDT 849

Query: 851  PMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRL 910
            PMDYT  RPRIMDH VT+EEIQ+ FVDYMI+D+LG ISTAHL+ ADR P KA SP+CL+L
Sbjct: 850  PMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECLQL 909

Query: 911  AELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATIPS 970
            A LHSMAVD+AKTGAPAEMP  L+P+EYPDFMERW++P YIS G+LGKLYR+ +     S
Sbjct: 910  ATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHMEKS 969

Query: 971  SD---FKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEIL 1030
             D      S       YD DLEVPG + F+  A+   E+Y EK++ L+ +Y A  EDEIL
Sbjct: 970  GDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDEIL 1029

Query: 1031 TGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSCGEEDRQKMASAWYHVT 1090
            TGN+R+K +YL++DN+RY E+ DRI+ +V +L +EA+GW  +S  EED  +MASAWY VT
Sbjct: 1030 TGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLLSSRKEEDASRMASAWYRVT 1089

Query: 1091 YHPDHCHDSDNCLGFPWTVHDVLVTIKSANR 1114
            YHPD          FPW   D L+ IK++++
Sbjct: 1090 YHPDR-RRGKRFWSFPWIACDNLLAIKASSQ 1115

BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Match: RDR1_ARATH (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana GN=RDR1 PE=2 SV=1)

HSP 1 Score: 750.7 bits (1937), Expect = 2.200e-215
Identity = 454/1132 (40.11%), Postives = 664/1132 (58.66%), Query Frame = 1

		  

Query: 12   TVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSKA 71
            T++V   P   +A+++  FLE   G GT++AI++   KK    + +  VQF S +  ++ 
Sbjct: 4    TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP-RVYAIVQFTS-ERHTRL 63

Query: 72   QELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRG-DVYVGLMKEEDQMCVIDTLE 131
               A    L +    L      +D+V +P   S   + G  ++ G        C + T +
Sbjct: 64   IITAAAERLYYGRSYLKAFEVEQDIVPKP-RASLHTISGLKMFFG--------CQVSTKK 123

Query: 132  DAKIWVMPDRNCVVFHLELEG---------KFYKMEVHFDDIFEAFGCYFDEQSPA---- 191
               +W   D  CV F + +           K Y++E+ +++I++      D  SP     
Sbjct: 124  FLTLWSAQDV-CVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ-----IDLHSPQGRSS 183

Query: 192  --ILLKLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAF 251
              +++++  APKI+++   P        D Y    ++    W+RTTD + S+ IG S+AF
Sbjct: 184  KFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQ---WIRTTDFTSSSCIGQSTAF 243

Query: 252  CWEIGEGSMGLDFFSTIPFYRKI-LENFVLEEYDEYSS-VSGLVPLVKCENNLKLDYEIL 311
            C E+       DF      Y +    +F++E    YSS  + LVP+V       L +EIL
Sbjct: 244  CLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEIL 303

Query: 312  FQINSLVHTLKISLADVTTELIDFLSTLSIDRAHM--VLQKVHKLSSTCYEPLSFIKTQV 371
            F++N+LV    +S   +  +    L+    DRA +   L+K+  L   CYEP  +++ + 
Sbjct: 304  FKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEY 363

Query: 372  QALDDAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFM 431
            +         L     L +D ++  +R  VTP ++   GPE+  SN +++++S + ++F+
Sbjct: 364  KKWISKGKLPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 423

Query: 432  RVTFVDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSA 491
            RV+FVDED  K+  M +S  +     S   RT +Y RI S+LR+GIVIGDK+FEFLAFS+
Sbjct: 424  RVSFVDEDLEKVRSMDLSPRS-----STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSS 483

Query: 492  SQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDV 551
            SQLR NS WMFA  D++ A  IR WMG F+ IR+++K AAR+GQ FS++ +T+ V   ++
Sbjct: 484  SQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEI 543

Query: 552  EVIPDIELNSDGIDYCFSDGIGKISLSFARQVAQKCGV-EHTPSAFQIRYGGYKGVVAVD 611
            EVIPD+E+ S G  Y FSDGIGKIS  FAR+VA+KCG+ E +PSAFQIRYGGYKGVVAVD
Sbjct: 544  EVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVD 603

Query: 612  RNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQE 671
             NS +KLSLR SM KFES+N  L+V   +K Q CY+NR+++TLL+TLGV DS  E   +E
Sbjct: 604  PNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQRE 663

Query: 672  HMRLLANTLTSRDAALALLESTDMGESKTLVK-MLRHGFEPNSEPYLLMMLRAYLESQLS 731
             +  L   LT    A   L     GE+  ++K ++  G++P++EP+L MML+ +  S+L 
Sbjct: 664  VVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLL 723

Query: 732  DLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAIL 791
            +LR + R+++  GR ++GCLDET  L YGQ+ V+ +      + M P        +  I+
Sbjct: 724  ELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS------DPMRPG-------RRFII 783

Query: 792  TGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDL 851
            TG VVV KNPCLHPGDVRVL+AV   AL    ++DC++FPQKG RPHPNECSG DLDGD+
Sbjct: 784  TGPVVVAKNPCLHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDI 843

Query: 852  YFISWDEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVL 911
            YF+ WD++L+PPRT  PMDYT    +I+DHDVT+EE++ +F +Y+++D+LG I+ AH   
Sbjct: 844  YFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAF 903

Query: 912  ADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQG 971
            AD+EP KA S  C+ LA+  S AVD+ KTG  A +P  L  KEYPDFME+ D+PTY S+ 
Sbjct: 904  ADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKN 963

Query: 972  ILGKLYRATVSATIPSSDFK-WSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSM 1031
            ++GKL+R       P    K ++ + A  +YD D+EV GFE ++D A   K  Y  K+  
Sbjct: 964  VIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGN 1023

Query: 1032 LLMFYGANSEDEILTGNL--RSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSC 1091
            L+ +YG  +E EIL+G +   SKS   R+D        + I  +V++L+KE    F  S 
Sbjct: 1024 LMDYYGIKTEAEILSGGIMRMSKSFTKRRD-------AESIGRAVRALRKETLSLFNASE 1083

Query: 1092 GEEDRQKMASAWYHVTYHPDHCH------DSDNCLGFPWTVHDVLVTIKSAN 1113
             EE+    ASAWYHVTYH  +        + D+ L F W V+D LV IK  N
Sbjct: 1084 EEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087

BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Match: RDR1_ORYSJ (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica GN=RDR1 PE=2 SV=2)

HSP 1 Score: 641.3 bits (1653), Expect = 1.900e-182
Identity = 341/738 (46.21%), Postives = 471/738 (63.82%), Query Frame = 1

		  

Query: 390  GPELEASNYIVKNFSAHTSDFMRVTFVDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRI 449
            GPE+  SN +V+NFS+   +F+R++FVDED  KL    +S  +  G  +   RT +Y R+
Sbjct: 13   GPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDAN--RTALYKRV 72

Query: 450  LSILREGIVIGDKRFEFLAFSASQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKC 509
            LS+L +GI IG K FEFLAFS+SQLR NS WMFAS   + A DIR WMG F  IR+++K 
Sbjct: 73   LSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVAKY 132

Query: 510  AARMGQLFSAAWQTVVVPVQDVEVIPDIELNSDGIDYCFSDGIGKISLSFARQVAQKCGV 569
            AAR+GQ FS++ +T+ V   +VE I DI+   +G  + FSDGIGKIS +FA +VA KC +
Sbjct: 133  AARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAMKCNL 192

Query: 570  EH-TPSAFQIRYGGYKGVVAVDRNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNR 629
            +   PSAFQIRYGGYKGVVAVD  S  KLSLR SMLKF+S N  ++V   +K Q  +LNR
Sbjct: 193  KRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFLNR 252

Query: 630  EIVTLLTTLGVEDSSLEALLQEHMRLLANTLTSRDAALALLESTDMGESKTLVK-MLRHG 689
            +++TLL+TLGV DS  E   +E +  L   +T   AA+  +E   MGE    VK +L  G
Sbjct: 253  QLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLLCG 312

Query: 690  FEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLR 749
            ++P+ EPYL M+L+ +  S+L +L+ + R+ +PKGR ++GCLDET  L YGQ+F+R T  
Sbjct: 313  YQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRATSG 372

Query: 750  KTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLI 809
                           D     +TG VV+ KNPCLHPGD+R+L AV    L    + +C++
Sbjct: 373  VN-------------DNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHH--MFNCVV 432

Query: 810  FPQKGERPHPNECSGGDLDGDLYFISWDEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQ 869
            FPQ+G RPHPNECSG DLDGD+YF+SWD  LIPPR V PMDYT      +DHDVT+EE++
Sbjct: 433  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 492

Query: 870  RFFVDYMISDTLGTISTAHLVLADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNV 929
             +F +Y+++++LG I+ AH+V AD+E  KA S  C+ LA+L S+AVD+ KTG PA +P  
Sbjct: 493  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 552

Query: 930  LKPKEYPDFMERWDRPTYISQGILGKLYRATVSATIPSSDFKWSEETARAAYDSDLEVPG 989
            L  KEYPDFME+ D+ TY S+G++GKLYR     T     F  + E AR +YD+D+ V G
Sbjct: 553  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHF--TREVARRSYDTDMIVDG 612

Query: 990  FEAFIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLRSKSIYLRKDNRRYRELTDRI 1049
            +E +I  A + K+ Y  K+  L+  YG  SE EI++G      I     N   +   D I
Sbjct: 613  YEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISG-----CILKMAKNFTKKSDADAI 672

Query: 1050 LISVKSLQKEAKGWF------ENSCGEEDRQKMASAWYHVTYHPD------HCHDSDNCL 1109
             ++V+SL+KEA+  F      +N  G +  +  ASAWYHVTYHP+        ++  + +
Sbjct: 673  RLAVRSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFI 723

Query: 1110 GFPWTVHDVLVTIKSANR 1114
             FPW +++ L+ IK   +
Sbjct: 733  SFPWCIYEKLLRIKQRRK 723

BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Match: SHL2_ORYSJ (Probable RNA-dependent RNA polymerase SHL2 OS=Oryza sativa subsp. japonica GN=SHL2 PE=2 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.900e-150
Identity = 332/858 (38.69%), Postives = 484/858 (56.41%), Query Frame = 1

		  

Query: 288  LDYEILFQINSLVHTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFI 347
            L + +LF +N+LVH   I+   +T E   F S L     ++ +  +       +      
Sbjct: 352  LKFPLLFMVNALVHKGIINQHQLTPE---FFSLLGRSEENVNVAALRDFWGDKFPVFDAC 411

Query: 348  KTQVQALDDAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHT 407
                +AL+    +   + S++ +D+     R ++TPT+   L PE+E SN +++++    
Sbjct: 412  GRLKKALNRVARNPKLLCSKVGDDHA-EVRRLVITPTRAYCLPPEVERSNRVLRHYHEVA 471

Query: 408  SDFMRVTFVDEDWGKLHPMAVSVSTE---QGIFSKPF--RTDVYHRILSILREGIVIGDK 467
              F+RVTF+DE    L+   ++  T    + + S  F  +T VY R+  +L EG  +  +
Sbjct: 472  DRFLRVTFMDEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGR 531

Query: 468  RFEFLAFSASQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQ 527
            ++ FLAFS++QLR  S W FA + K   + IR+WMG F   ++++K AARMGQ FS+ + 
Sbjct: 532  KYSFLAFSSNQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSSTYA 591

Query: 528  TVVVPVQDV-EVIPDIELNSDGIDYCFSDGIGKISLSFARQVAQKCGV-EHTPSAFQIRY 587
            TV +   +V E   D+  N    +Y FSDGIGKI+   A +VA++  + ++ PSA+QIR+
Sbjct: 592  TVTMRPDEVDESFDDVVHN----EYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRF 651

Query: 588  GGYKGVVAV--DRNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLG 647
             G+KGV+AV        +L LR SM KFES + +L V    K Q  +LNR+I+ LL++L 
Sbjct: 652  AGFKGVIAVWQGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLN 711

Query: 648  VEDSSLEALLQEHMRLLANTLTSRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLLM 707
            V DS    + +  +  L N L+ RD A  +L ++   +  T   ML  GFEP +EP+L  
Sbjct: 712  VPDSIFWQMQETMLSNLNNILSDRDVAFEVLTTSCADDGNTAALMLSAGFEPRTEPHLKA 771

Query: 708  MLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENM-DPS 767
            ML A   +QL DL  + R++VPKGR L+GCLDE G+L  GQ F+R T+       +   S
Sbjct: 772  MLLAIRSAQLQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHGS 831

Query: 768  IFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHP 827
             F   D+ T ++ GTVV+ KNPCLHPGDVR+LEAV    L    L+DCL+FPQKGERPH 
Sbjct: 832  RFSSTDKNTEVILGTVVIAKNPCLHPGDVRILEAVDVPELHH--LVDCLVFPQKGERPHA 891

Query: 828  NECSGGDLDGDLYFISWDEKLIPP--RTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMI 887
            NE SG DLDGDLYF++WDEKLIPP  ++  PMDY+    + +   V+  +I  FF+  MI
Sbjct: 892  NEASGSDLDGDLYFVTWDEKLIPPGKKSWNPMDYSPPEAKQLPRQVSQHDIIDFFLKNMI 951

Query: 888  SDTLGTISTAHLVLADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPD 947
            S+ LG I  AH+V AD     A+  KC+ LAEL + AVD+ KTG  A MP  LKPK YPD
Sbjct: 952  SENLGRICNAHVVHADLSEYGAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPD 1011

Query: 948  FMERWDRPTYISQGILGKLYRATVSATIPSSDFKWSEETAR---AAYDSDLEVPGFEAFI 1007
            FM + D  +Y S+ ILG+LYR+   A   S+    S+E        YD DLEVPG   F+
Sbjct: 1012 FMGKEDGQSYKSEKILGRLYRSIQEA---SNGDVVSQEVCTPNDLPYDIDLEVPGASDFL 1071

Query: 1008 DTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLRSKSIYLRKDNRRYRELTDRILISVK 1067
             +A  CK  Y  ++S LL  Y   +E E++TG++   +  ++  +++  ++ DR+  +  
Sbjct: 1072 ASAWQCKCSYDAQLSALLSQYRVRTEAELVTGHI---TFLVKNSSKKQGDIKDRLKTAYS 1131

Query: 1068 SLQKEAKGWFEN------SCGEEDR----QKMASAWYHVTYHPDHCHDSDNCLG------ 1110
            +L+KE K  FE+        G++++    +  ASAWY VTYHP     S   LG      
Sbjct: 1132 ALRKEFKSTFESIASDQCEIGDDEKNLLYEMKASAWYQVTYHPKWVEKSRGILGPDGEEI 1191

BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2)

HSP 1 Score: 1291.2 bits (3340), Expect = 0.000e+0
Identity = 639/1122 (56.95%), Postives = 837/1122 (74.60%), Query Frame = 1

		  

Query: 3    IDRPTVERSTVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQF 62
            +   T  RSTV++SN+P T  A ++  FLE  +G+ T+FA+EI T + NWK +   RVQF
Sbjct: 2    VSETTTNRSTVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQF 61

Query: 63   ESLDSKSKAQELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRGDVYVGLMK-EED 122
             +L+ KS+AQ L+ ++ LLFK   L LS +++D++ RP++P  R     + VG  + +E 
Sbjct: 62   TTLEVKSRAQLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEK 121

Query: 123  QMCVIDTLEDAKIWVMPDRNCVVFHLELEGKFYKMEVHFDDIFEAFGCYFD---EQSPAI 182
            + C ++  +  + W++ ++  V F +   G  YK+EV F+DI E   C  +    +  A 
Sbjct: 122  RFCALEKWDGVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAF 181

Query: 183  LLKLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAFCWE 242
            LLKLKY PK+++R++  ++ T+F +DRY  CKED +F+W+RTTD S S SIG S+ FC E
Sbjct: 182  LLKLKYGPKVFKRVT-VHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLE 241

Query: 243  IGEGSMGLDFFSTIPFYRKILENFVLEEYDEYSSVSGLVPLVKCEN-NLKLDYEILFQIN 302
            +  GS  LD FS +P+YR+   +    +   ++S + +VPL+      L+  YEILFQ+N
Sbjct: 242  VHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLN 301

Query: 303  SLVHTLKISL-ADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFIKTQVQAL-D 362
            +LVH  KISL A    ELI  L  +S++ A ++L+K+H+ SS CY+P+ F+KTQ+Q++  
Sbjct: 302  ALVHAQKISLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVK 361

Query: 363  DAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFMRVTF 422
              ++S      RLT  NIM C RA VTP+KI LLGPELE +NY+VKNF+ H SDFMRVTF
Sbjct: 362  KMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTF 421

Query: 423  VDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSASQLR 482
            V+EDW KL   A+SV++++G F KP RT++Y+R+LSIL EGI +G KRFEFLAFSASQLR
Sbjct: 422  VEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLR 481

Query: 483  SNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEVIP 542
             NSVWMFASN+KVKA+DIREWMG F KIRSISKCAARMGQLFSA+ QT++V  QDVE IP
Sbjct: 482  GNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIP 541

Query: 543  DIELNSDGIDYCFSDGIGKISLSFARQVAQKCGVEHTPSAFQIRYGGYKGVVAVDRNSFR 602
            DIE+ +DG DYCFSDGIGKISL+FA+QVAQKCG+ H PSAFQIRYGGYKGV+AVDR+SFR
Sbjct: 542  DIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFR 601

Query: 603  KLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQEHMRLL 662
            KLSLR SMLKF+S NRMLNVT+  +S  C+LNREI+ LL+TLG+ED+  EA+   H+ +L
Sbjct: 602  KLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSML 661

Query: 663  ANTLTSRDAALALLESTDMGESKT-LVKMLRHGFEPNSEPYLLMMLRAYLESQLSDLRGR 722
             N L  RDAAL +L+      SK  LVKML  G+ P+SEPYL MMLR + ESQLS+L+ R
Sbjct: 662  GNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSR 721

Query: 723  CRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAILTGTVV 782
            CR+ VPKGR+L+GC+DE GIL YGQ++VR+TL K EL++ D S F K+DE+T+++ G VV
Sbjct: 722  CRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVV 781

Query: 783  VTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDLYFISW 842
            VTKNPCLHPGD+RVL+A+YEV  EEKG +DC+IFPQKGERPHPNECSGGDLDGD +F+SW
Sbjct: 782  VTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSW 841

Query: 843  DEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVLADREP 902
            DEK+IP     PMDY G RPR+MDHDVT+EEI +FFVDYMISDTLG ISTAHLV ADR+P
Sbjct: 842  DEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDP 901

Query: 903  EKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKL 962
            EKA S KCL LA LHS AVD+AKTGAPAEMP  LKP+E+PDF+ER+++PTYIS+ + GKL
Sbjct: 902  EKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKL 961

Query: 963  YRATVSATIPSSDFKWSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSMLLMFYG 1022
            YRA  S+         SE+T   AYD  LE  GFE+FI+TAK+ ++MY EK++ L+++YG
Sbjct: 962  YRAVKSSLAQRKPEAESEDT--VAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYG 1021

Query: 1023 ANSEDEILTGNLRSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSC-GEEDRQK 1082
            A +E+EILTG L++K +YL +DNRRY ++ DRI +SVK L KEA GWFE SC  E+ ++K
Sbjct: 1022 AANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCEDEQQKKK 1081

Query: 1083 MASAWYHVTYHPDHCHDSDNCLGFPWTVHDVLVTIKSANRKQ 1116
            +ASAWY+VTY+P+H  +    L FPW V DVL+ IK+ N ++
Sbjct: 1082 LASAWYYVTYNPNHRDEKLTFLSFPWIVGDVLLDIKAENAQR 1120

BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1)

HSP 1 Score: 750.7 bits (1937), Expect = 1.300e-216
Identity = 454/1132 (40.11%), Postives = 664/1132 (58.66%), Query Frame = 1

		  

Query: 12   TVRVSNIPTTATAQDIFDFLESKIGKGTIFAIEIFTEKKNWKSKGHGRVQFESLDSKSKA 71
            T++V   P   +A+++  FLE   G GT++AI++   KK    + +  VQF S +  ++ 
Sbjct: 4    TIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGP-RVYAIVQFTS-ERHTRL 63

Query: 72   QELALENDLLFKGCPLSLSSSHEDVVVRPIEPSCRGVRG-DVYVGLMKEEDQMCVIDTLE 131
               A    L +    L      +D+V +P   S   + G  ++ G        C + T +
Sbjct: 64   IITAAAERLYYGRSYLKAFEVEQDIVPKP-RASLHTISGLKMFFG--------CQVSTKK 123

Query: 132  DAKIWVMPDRNCVVFHLELEG---------KFYKMEVHFDDIFEAFGCYFDEQSPA---- 191
               +W   D  CV F + +           K Y++E+ +++I++      D  SP     
Sbjct: 124  FLTLWSAQDV-CVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQ-----IDLHSPQGRSS 183

Query: 192  --ILLKLKYAPKIYQRISGPNLYTRFTADRYHICKEDLEFIWVRTTDISKSNSIGLSSAF 251
              +++++  APKI+++   P        D Y    ++    W+RTTD + S+ IG S+AF
Sbjct: 184  KFLVIQVIGAPKIFEKEDQPINLLFGIMDFYSDGSDEQ---WIRTTDFTSSSCIGQSTAF 243

Query: 252  CWEIGEGSMGLDFFSTIPFYRKI-LENFVLEEYDEYSS-VSGLVPLVKCENNLKLDYEIL 311
            C E+       DF      Y +    +F++E    YSS  + LVP+V       L +EIL
Sbjct: 244  CLELPVHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEIL 303

Query: 312  FQINSLVHTLKISLADVTTELIDFLSTLSIDRAHM--VLQKVHKLSSTCYEPLSFIKTQV 371
            F++N+LV    +S   +  +    L+    DRA +   L+K+  L   CYEP  +++ + 
Sbjct: 304  FKLNTLVQNACLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEY 363

Query: 372  QALDDAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHTSDFM 431
            +         L     L +D ++  +R  VTP ++   GPE+  SN +++++S + ++F+
Sbjct: 364  KKWISKGKLPLSPTISL-DDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFL 423

Query: 432  RVTFVDEDWGKLHPMAVSVSTEQGIFSKPFRTDVYHRILSILREGIVIGDKRFEFLAFSA 491
            RV+FVDED  K+  M +S  +     S   RT +Y RI S+LR+GIVIGDK+FEFLAFS+
Sbjct: 424  RVSFVDEDLEKVRSMDLSPRS-----STQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSS 483

Query: 492  SQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDV 551
            SQLR NS WMFA  D++ A  IR WMG F+ IR+++K AAR+GQ FS++ +T+ V   ++
Sbjct: 484  SQLRENSAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEI 543

Query: 552  EVIPDIELNSDGIDYCFSDGIGKISLSFARQVAQKCGV-EHTPSAFQIRYGGYKGVVAVD 611
            EVIPD+E+ S G  Y FSDGIGKIS  FAR+VA+KCG+ E +PSAFQIRYGGYKGVVAVD
Sbjct: 544  EVIPDVEIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVD 603

Query: 612  RNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVEDSSLEALLQE 671
             NS +KLSLR SM KFES+N  L+V   +K Q CY+NR+++TLL+TLGV DS  E   +E
Sbjct: 604  PNSSKKLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQRE 663

Query: 672  HMRLLANTLTSRDAALALLESTDMGESKTLVK-MLRHGFEPNSEPYLLMMLRAYLESQLS 731
             +  L   LT    A   L     GE+  ++K ++  G++P++EP+L MML+ +  S+L 
Sbjct: 664  VVDRLDAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLL 723

Query: 732  DLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDPSIFHKLDEKTAIL 791
            +LR + R+++  GR ++GCLDET  L YGQ+ V+ +      + M P        +  I+
Sbjct: 724  ELRTKTRIFISGGRSMMGCLDETRTLEYGQVVVQYS------DPMRPG-------RRFII 783

Query: 792  TGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGERPHPNECSGGDLDGDL 851
            TG VVV KNPCLHPGDVRVL+AV   AL    ++DC++FPQKG RPHPNECSG DLDGD+
Sbjct: 784  TGPVVVAKNPCLHPGDVRVLQAVNVPALNH--MVDCVVFPQKGLRPHPNECSGSDLDGDI 843

Query: 852  YFISWDEKLIPPRTVAPMDYTGCRPRIMDHDVTMEEIQRFFVDYMISDTLGTISTAHLVL 911
            YF+ WD++L+PPRT  PMDYT    +I+DHDVT+EE++ +F +Y+++D+LG I+ AH   
Sbjct: 844  YFVCWDQELVPPRTSEPMDYTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAF 903

Query: 912  ADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQG 971
            AD+EP KA S  C+ LA+  S AVD+ KTG  A +P  L  KEYPDFME+ D+PTY S+ 
Sbjct: 904  ADKEPLKAFSDPCIELAKKFSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKN 963

Query: 972  ILGKLYRATVSATIPSSDFK-WSEETARAAYDSDLEVPGFEAFIDTAKSCKEMYMEKMSM 1031
            ++GKL+R       P    K ++ + A  +YD D+EV GFE ++D A   K  Y  K+  
Sbjct: 964  VIGKLFREVKERAPPLISIKSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGN 1023

Query: 1032 LLMFYGANSEDEILTGNL--RSKSIYLRKDNRRYRELTDRILISVKSLQKEAKGWFENSC 1091
            L+ +YG  +E EIL+G +   SKS   R+D        + I  +V++L+KE    F  S 
Sbjct: 1024 LMDYYGIKTEAEILSGGIMRMSKSFTKRRD-------AESIGRAVRALRKETLSLFNASE 1083

Query: 1092 GEEDRQKMASAWYHVTYHPDHCH------DSDNCLGFPWTVHDVLVTIKSAN 1113
             EE+    ASAWYHVTYH  +        + D+ L F W V+D LV IK  N
Sbjct: 1084 EEENESAKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTN 1087

BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6)

HSP 1 Score: 521.5 bits (1342), Expect = 1.200e-147
Identity = 328/865 (37.92%), Postives = 475/865 (54.91%), Query Frame = 1

		  

Query: 288  LDYEILFQINSLVHTLKISLADVTTELIDFLSTLSIDRAHMVLQKVHKLSSTCYEPLSFI 347
            + +EI+F +NS++H    +   +T    D L     D     L+ +       ++    +
Sbjct: 326  ISFEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHLCTYKRPVFDAYKRL 385

Query: 348  KTQVQALDDAQNSSLFVRSRLTNDNIMRCHRALVTPTKICLLGPELEASNYIVKNFSAHT 407
            K   + +   Q +   + S   +++I    R ++TPT+   L PE+E SN +++ + A  
Sbjct: 386  KLVQEWI---QKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNRVLRRYKAVA 445

Query: 408  SDFMRVTFVDEDWGKLHPMAVSVSTE---QGIFSKPF--RTDVYHRILSILREGIVIGDK 467
              F+RVTF+DE    ++   +S       + + S  F  +T V+ R+ SIL +G  +  +
Sbjct: 446  ERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGR 505

Query: 468  RFEFLAFSASQLRSNSVWMFASNDKVKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQ 527
            ++ FLAFSA+QLR  S W FA + K +  DI+ WMG F K ++++KCAARMG  FS+ + 
Sbjct: 506  KYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKF-KDKNVAKCAARMGLCFSSTYA 565

Query: 528  TVVVPVQDVEV-IPDIELNSDGIDYCFSDGIGKISLSFARQVAQKC--GVEHTPSAFQIR 587
            TV V   +V+  +PDIE N     Y FSDGIG I+   A +V +K    V ++P A+QIR
Sbjct: 566  TVDVMPHEVDTEVPDIERNG----YVFSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIR 625

Query: 588  YGGYKGVVA--VDRNSFRKLSLRSSMLKFESKNRMLNVTKCNKSQSCYLNREIVTLLTTL 647
            Y G+KGVVA    ++   +L+LR SM KF SK+ +L +    + Q  +LNR+I+TLL+ L
Sbjct: 626  YAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNRQIITLLSVL 685

Query: 648  GVEDSSLEALLQEHMRLLANTLTSRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYLL 707
            GV D     + +  +  L   L   D A  +L ++   +  T   ML  GF+P +EP+L 
Sbjct: 686  GVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIMLSAGFKPKTEPHLR 745

Query: 708  MMLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELEN---M 767
             ML +   +QL  LR + R++V  GR L+GCLDE GIL +GQ F++++  K  +EN    
Sbjct: 746  GMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVS--KPSIENCFSK 805

Query: 768  DPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEKGLIDCLIFPQKGER 827
              S F +      ++ G V + KNPCLHPGDVR+LEAV    L    + DCLIFPQKG+R
Sbjct: 806  HGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHH--MYDCLIFPQKGDR 865

Query: 828  PHPNECSGGDLDGDLYFISWDEKLIPP--RTVAPMDYTGCRPRIMDHDVTMEEIQRFFVD 887
            PH NE SG DLDGDLYF++WD+KLIPP  ++   M Y     + +   V  ++I  FF  
Sbjct: 866  PHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFAR 925

Query: 888  YMISDTLGTISTAHLVLADREPEKALSPKCLRLAELHSMAVDYAKTGAPAEMPNVLKPKE 947
             + ++ LGTI  AH+V ADR    A+  +CL LAEL + AVD+ KTG    MP  LKPK 
Sbjct: 926  NLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKL 985

Query: 948  YPDFMERWDRPTYISQGILGKLYRATVSATIPSSDFKWSEETARAA--YDSDLEVPGFEA 1007
            YPDFM + D  TY S  ILG+LYR         ++    E T  +A  YD+ LE+PGFE 
Sbjct: 986  YPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDAVLEIPGFED 1045

Query: 1008 FIDTAKSCKEMYMEKMSMLLMFYGANSEDEILTGNLRSKSIYLRKDNRRYRELTDRILIS 1067
             I  A   K +Y  ++  LL  Y    E+EI+TG++ S   Y  K   +  EL +R+  S
Sbjct: 1046 LIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSK---KQGELKERLKHS 1105

Query: 1068 VKSLQKEAKGWFE------NSCGEEDR----QKMASAWYHVTYHPD------HCHDSDN- 1115
              SL+KE +  FE       +  EE++    +K ASAWYHVTYHP+         D D  
Sbjct: 1106 YNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDES 1165

BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein)

HSP 1 Score: 131.3 bits (329), Expect = 3.600e-30
Identity = 157/593 (26.48%), Postives = 251/593 (42.33%), Query Frame = 1

		  

Query: 446 YHRILSILREGIVIGDKRFEFLAFS----ASQLRSNSVWMF----------ASNDK---- 505
           Y +   I + GI++G +R++F  F     A + + NS              AS+D     
Sbjct: 268 YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMENPY 327

Query: 506 -VKADDIREWMGSFNKIRSISKCAARMGQLFSAAWQTVVVPVQDVEV----IPDIE---- 565
            +    I E    F  + ++   A  M +      +T  + V   E+    I DI     
Sbjct: 328 ILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKKLEVDMTEITVMQIDDIHCHDQ 387

Query: 566 -----LNSDGIDYCFSDGIGKISLSFARQVA--------------QKCGVEHTPSAFQIR 625
                L+ +G     SDG G IS   AR                 Q   V+  P   QIR
Sbjct: 388 SNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNIQGTCVQEPPLLIQIR 447

Query: 626 Y----GGYKGVVAVDRN-SFRKLSLRSSMLK---------FESKNRMLNVTKCNKSQSCY 685
                   KG+  +++N   + + +R SM+K         F + N +  VT  N  +   
Sbjct: 448 MFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTFNSLEVVTTSNPPKRAK 507

Query: 686 LNREIVTLLTTLGV-EDSSLEALLQEHMRLLANTLTSRDAALALLESTDMGESKTLVKML 745
           L++ +V LL+  GV  D  L+ LL    +        R A  A L   +M + K  ++M+
Sbjct: 508 LSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAALHYGNM-DDKNALQMI 567

Query: 746 RHGFEPNSEPYLLMMLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRL 805
             G  P  EPYL   L   L+ +  DL+   +L + +   L+G +D TG           
Sbjct: 568 MAGI-PLDEPYLKHYLSKLLKLEKDDLKAG-KLPIDESYYLMGTVDPTG----------- 627

Query: 806 TLRKTELENMDPSIFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEK--GL 865
            L++ E+  +  S               V+V +NP LH GD+ +L+A Y  +LE+     
Sbjct: 628 ELKEDEVSGLAKS-------------QDVLVYRNPGLHFGDIHILKATYVKSLEQYVGNS 687

Query: 866 IDCLIFPQKGERPHPNECSGGDLDGDLYFISWDEKLI-------PPRTVAPMD--YTGCR 925
              + FPQKG R   +E +GGD DGD+YFIS + KL+       P  + +P    YTG +
Sbjct: 688 KYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHYKPSEPWVSSSPRSKIYTGRQ 747

Query: 926 PRIMDHDVTMEEIQRFFV--DYMISDTLGTISTAHLVLADR--------EPEKA-LSPKC 956
           P  +  +   EE+ + F+   +  S  +G  + + L + DR          EKA +  K 
Sbjct: 748 PSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAIMDRFLTLGDENVKEKAEMKKKM 807

BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Match: AT2G19930.1 (RNA-dependent RNA polymerase family protein)

HSP 1 Score: 128.3 bits (321), Expect = 3.000e-29
Identity = 140/496 (28.23%), Postives = 225/496 (45.36%), Query Frame = 1

		  

Query: 549 SDGIGKISLSFAR--------------QVAQKCGVEHTPSAFQIR--YGGY--KGVVAVD 608
           SDG G IS   AR              +  Q+   +  P   Q R  Y GY  KG   ++
Sbjct: 399 SDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLN 458

Query: 609 RNSF-RKLSLRSSMLK---------FESKNRMLNVTKCNKSQSCYLNREIVTLLTTLGVE 668
           +    R + +R SM+K         F + N +  VT  N  +   L++ +V LL+  G+ 
Sbjct: 459 KKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIP 518

Query: 669 DSS-LEALL---QEHMRLLANTLTSRDAALALLESTDMGESKTLVKMLRHGFEPNSEPYL 728
           +   L+ LL   +E   +  N   + +AAL   E  D   ++ ++  +     P  EP+L
Sbjct: 519 NEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQNAAQMILVGI-----PLDEPHL 578

Query: 729 LMMLRAYLESQLSDLRGRCRLYVPKGRVLLGCLDETGILNYGQIFVRLTLRKTELENMDP 788
              L   L+++ +DL+   +L V +   L+G +D TG L   ++ V L            
Sbjct: 579 KNYLSILLKTEKNDLKAG-KLPVTESYYLMGTVDPTGALKEDEVCVIL------------ 638

Query: 789 SIFHKLDEKTAILTGTVVVTKNPCLHPGDVRVLEAVYEVALEEK--GLIDCLIFPQKGER 848
                   ++  ++G V+V +NP LH GD+ +L+A Y  ALEE        + FPQKG R
Sbjct: 639 --------ESGQISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPR 698

Query: 849 PHPNECSGGDLDGDLYFISWDEKLI-------PPRTVAP--MDYTGCRPRIMDHDVTMEE 908
              +E +GGD DGD+YFIS + +L+       P  ++ P     +G  P  +  +   EE
Sbjct: 699 SLGDEIAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEE 758

Query: 909 IQRFFV--DYMISDTLG-------TISTAHLVLA-DREPEKA-LSPKCLRLAELHSMAVD 968
           +   F+   +  S+ +G       TI    L+L  DR  EKA +  K L L +++  A+D
Sbjct: 759 LFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALD 818

Query: 969 YAKTGAPAEMPNVLKPKEYPDFMERWDRPTYISQGILGKLYRATVSATIPSSDFKWSEET 990
             K G    +PN LKP  +P +MER  +  + S  ILG ++           DF  S+ T
Sbjct: 819 APKKGDKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIF-----------DFVKSQTT 855

The following BLAST results are available for this feature:
BLAST of Spo04141.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902213558|gb|KNA17291.1|0.0e+0100.hypothetical protein SOVF_0813... [more]
gi|731335445|ref|XP_010678731.1|0.0e+085.1PREDICTED: RNA-dependent RNA p... [more]
gi|565356369|ref|XP_006345040.1|0.0e+064.4PREDICTED: RNA-dependent RNA p... [more]
gi|970018979|ref|XP_015070676.1|0.0e+064.3PREDICTED: RNA-dependent RNA p... [more]
gi|697138450|ref|XP_009623301.1|0.0e+063.4PREDICTED: RNA-dependent RNA p... [more]
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BLAST of Spo04141.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCQ7_SPIOL0.0e+0100.Uncharacterized protein OS=Spi... [more]
A0A0J8CAC7_BETVU0.0e+085.1Uncharacterized protein OS=Bet... [more]
A0A0V0IXZ5_SOLCH0.0e+064.4Putative RNA-dependent RNA pol... [more]
K4BKR6_SOLLC0.0e+063.8Uncharacterized protein OS=Sol... [more]
Q647I4_NICBE0.0e+063.2Putative RNA-dependent RNA pol... [more]
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BLAST of Spo04141.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RDR2_ARATH0.0e+056.9RNA-dependent RNA polymerase 2... [more]
RDR2_ORYSJ0.0e+051.0Probable RNA-dependent RNA pol... [more]
RDR1_ARATH2.2e-21540.1RNA-dependent RNA polymerase 1... [more]
RDR1_ORYSJ1.9e-18246.2Probable RNA-dependent RNA pol... [more]
SHL2_ORYSJ1.9e-15038.6Probable RNA-dependent RNA pol... [more]
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BLAST of Spo04141.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G11130.10.0e+056.9RNA-dependent RNA polymerase 2[more]
AT1G14790.11.3e-21640.1RNA-dependent RNA polymerase 1[more]
AT3G49500.11.2e-14737.9RNA-dependent RNA polymerase 6[more]
AT2G19920.13.6e-3026.4RNA-dependent RNA polymerase f... [more]
AT2G19930.13.0e-2928.2RNA-dependent RNA polymerase f... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..90
score: 0.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 11..94
score: 11
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 9..1115
score:
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 381..957
score: 4.9E
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 7..93
score: 4.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 6..99
score: 1.9
NoneNo IPR availablePANTHERPTHR23079:SF5RNA-DEPENDENT RNA POLYMERASE 2coord: 9..1115
score:

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006342 chromatin silencing
biological_process GO:0051301 cell division
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0030433 ubiquitin-dependent ERAD pathway
biological_process GO:0006486 protein glycosylation
biological_process GO:0016310 phosphorylation
biological_process GO:0006490 oligosaccharide-lipid intermediate biosynthetic process
biological_process GO:0097502 mannosylation
biological_process GO:0016569 covalent chromatin modification
biological_process GO:0048767 root hair elongation
biological_process GO:0008360 regulation of cell shape
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009556 microsporogenesis
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0061025 membrane fusion
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0016579 protein deubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0050896 response to stimulus
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006260 DNA replication
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0006810 transport
biological_process GO:0048731 system development
biological_process GO:0050793 regulation of developmental process
biological_process GO:0044237 cellular metabolic process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0044238 primary metabolic process
biological_process GO:0071702 organic substance transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0033036 macromolecule localization
biological_process GO:0010467 gene expression
biological_process GO:0009987 cellular process
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0007267 cell-cell signaling
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0098542 defense response to other organism
biological_process GO:0043412 macromolecule modification
biological_process GO:0048507 meristem development
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0001172 transcription, RNA-templated
biological_process GO:0006281 DNA repair
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008152 metabolic process
biological_process GO:0048653 anther development
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0007020 microtubule nucleation
biological_process GO:0019048 modulation by virus of host morphology or physiology
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006952 defense response
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0005982 starch metabolic process
cellular_component GO:0005829 cytosol
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005886 plasma membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0008622 epsilon DNA polymerase complex
cellular_component GO:0031379 RNA-directed RNA polymerase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000136 alpha-1,6-mannosyltransferase complex
cellular_component GO:0031011 Ino80 complex
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0052926 dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0052918 dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0004377 GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0008242 omega peptidase activity
molecular_function GO:0004843 thiol-dependent ubiquitin-specific protease activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo142750.78Barchart | Table
Spo223860.77Barchart | Table
Spo226260.76Barchart | Table
Spo215950.75Barchart | Table
Spo026720.74Barchart | Table
Spo182440.74Barchart | Table
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