Spo04128 (gene)

Overview
NameSpo04128
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibonuclease III
LocationSpoScf_00523 : 173820 .. 176743 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGTTAAAGTGAAAGTAGCGTTAGGTTTTCACTGCACAGAAAAGTAGAAAACTGAAGACGCTCTGGAATTGGATTCTCCACTTTGATCACAAAAAATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGGTTTAATTCTTCTCTAGACTCTAATTCTTCTCGAAACCCCCGAAATTGCCGAAAACACGTTTTGTTAATTTTTGAACTTAAACCCTTTCTTTGAATTTAATTTAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGAGTACTTTCTTTCATCTCTTTCTTTCTAATTTTGTGTTGATATTTTACTGTTACTTATGCCCAACTGAAATAGACTGTAAATTGGTGTAGTAAGTGAAGAAATTGTTAAAGATGAACAAGAAATGAGGGTAATTGATTGGTAAAGATGATAAATCAACTAATTGACCGGGAATTGCTCCAAGTCACTCGAACCGGACCCGATCACTCGACTTGACCAGCTCTAGTTAAAAGATTCAGTTAGCTAGTTTTCTTGATGCTGTTTTTACCAATGCAACTTATAAATCATGATAGAGAAAGGTATAAATGGTACTTGGGTCAAAAATTGTTTCTCCATTTGCCTTAATTTCTAATGATGTTGATGTTAGGATGGGTGGATTTATTTTAATCTAAGTTATTTGGATTACTTGATTAAACCCAAAGCAATGATGATCCAACCATTCAAACTTGAGACTAGATATAGATAATAGATGACTTCATGACCGACTCTTAGATACACAATTTCATGAGACTGAGTGTCCAAATTTTATGTTTGTTGTTGTTAGTTTTTTACGGAATGCCTATTTGGCTACATACTTAAAATAACACTGTTCTTGAAGTAGGAAGATTCAAAATGCCTGTTTGTGCAAGGGAGAGTGAGTTTGAAATTTGGTAGTTTTTTGAAGTGTTGTCAACCTCTTGGAATATAGTTGGTCCCCTTTGTGAATATAGTTAGAAGGAGAAAGGAAGTGTGGATTTGGAGAATTGCAATTGGAAACTCATCATTTCTAGCGTGAGTCATTTAGTCTTGTTCGCGTGTTCGTTACTGTCTTAGACCATGCTGATATACGGCTGAATCACCAAGAGGAAGAGCTTGAGTGGTCATAACTTATACGAGATAACCTATGGTAGTTGTCCCCTTTCTATGGTTCCTCCACCTCATTTCACCTGGACTCCGGAATCATGAACCATGACTTGGGGCTCGAGGATGGCCCACAGCCTGTGTGGTAATGTGGTCATTCCTCGGCCCTCTTCATCCCATGAACGAGGGGATTTCAGTTCATTCTATTCTCTCTTGTAGACATCAATGCTCATCACCTCTCGCGGATGTTTTCAGCTGAATGAGGCTCCATTTGAGGTTCAAAGTAGGAAGATAGATAATCAAATGAGATACATTTGGTATACGGAGTACAAATAATTTGTCCTTCAAATTTTGACTCTCTTGTTTTTCCTATGGATGCCTGGGGTTTGTGAAACGTTTTGTGGTTATTGAGGAGAGAATATTTGATAACTGACGAGCAACTGATCATCCCTGAATTTTTCCTAAACAGAATGCCAGCTTTTAAATATGTGCATTTTATTGTCATTTGAATGTTCACACTTCTCTTCGGCATAACTGGTTCCGAATTGAGCATGGAATTGTTTGAGTGATTGGATTTCCTTCTTCATTGCAGCTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAGGTAAGCCTCAGAACTATAAATGGCTGCATCCTACTATGAACTCATGTTATGTGAATCATTTCTGTATATTGTATGGAGTATTAGCTTTATGTATACCGTAGAAGTAGTATGACCGGAAACTCCATTCTGAATCTGTATTACTCTGAATCTTTTGTGATGCTAACATAGTCTTATCTATGGTTCTTAATAAAAGTACTGTTGTTTATGTGTGGGCCCAAACTTACATCTCTATCCTACCGGAGTACTTTGTCGGAATGCAGATGAATGTCTATTTCAGAGTCTTTTGTTATCTTTGAAGGAAAAATGCATTGTGATCATCCTGTATGTCATCTTGAAAATGACATTTTAGATTCACAGAACCACTGAGATATTCCCTGGTTGTCATTTGATTTTAGATTTGTTAGGTTTACCTTAGAGCCTGTCTCCAGGTTGGTGGTGATTGTTGAATCTGGAAACAGGCTATTCGCTATTAGAAAAGTACAGCTCAATGGTAATAAGATTGCCGGACTAATTCCTTTTAAAAGTCTTAAGTTTAACAAGTCTATTAGTTGCTAAATCCTGTTTCTACCGTTTCCTGTCCTAGGTTCATGCATGAACAACACTGAAGGATTAAGGGCATGTTTGGTATACACTTAGGAAATGAAATGGAAAGGGTAGGGTTAGTATTACCAATATTAGTTGTTTGGTATATCTTAGGAAATGAATCACTTGTAACAAATTGG

mRNA sequence

TTGTTAAAGTGAAAGTAGCGTTAGGTTTTCACTGCACAGAAAAGTAGAAAACTGAAGACGCTCTGGAATTGGATTCTCCACTTTGATCACAAAAAATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGACTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAGGTTCATGCATGAACAACACTGAAGGATTAAGGGCATGTTTGGTATACACTTAGGAAATGAAATGGAAAGGGTAGGGTTAGTATTACCAATATTAGTTGTTTGGTATATCTTAGGAAATGAATCACTTGTAACAAATTGG

Coding sequence (CDS)

ATGGACCGTCGTACTGCTGTTTGTTTTGCAATTCTCACCCTGGCAATGGCTACTTCTTCTGCAATTCAGCTGCAGATTGGCGCTCGAGATGAATTCAGGAAGACCCAAATAATCACAACAAATTCTCCGTTCTCTATTGCACTTGAAACCCTCCAGAAGCAGATTGACTATAGTTTTCAACGCATCGATCTTCTACGGCGTGCAATGACCCATGCTTCATTTTCAGAGGAGAACAACCGAGCATTAAGCATTCTAGGGACAAGCATTATTGAAACATCTGTGGCCTTTCGGTATCTTCTAGATGACATTGATATTTCTTCAAAAACTCTGAACCGTGAAATAGCTGAGGTATGTAATGTGGAGTCTTCTTGTGCCGTGGATGGAATGCGTTTGGGGTTGCACAAAGTACTCAGAGTCTCTCACAAAACTAACTCTACCACTCCGGCCGTAGTCTGTGGTGCTTTTCGTGCAATATTCGGTGCTGTTGCCCTTGATTCTGGGAAGTCCGATGCTGCTGCAAAAGTGTTCTTGAATGTTCATACTCGCACCGGTGAATTAGCTGCTGATTTTTAG

Protein sequence

MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVHTRTGELAADF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04128.1Spo04128.1mRNA


Homology
[Close]
BLAST of Spo04128.1 vs. NCBI nr
Match: gi|902163620|gb|KNA06856.1| (hypothetical protein SOVF_177200 isoform A [Spinacia oleracea])

HSP 1 Score: 362.1 bits (928), Expect = 6.100e-97
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 190
[Close]
BLAST of Spo04128.1 vs. NCBI nr
Match: gi|902163621|gb|KNA06857.1| (hypothetical protein SOVF_177200 isoform B [Spinacia oleracea])

HSP 1 Score: 354.0 bits (907), Expect = 1.600e-94
Identity = 188/190 (98.95%), Postives = 188/190 (98.95%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAI  QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAI--QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 188
[Close]
BLAST of Spo04128.1 vs. NCBI nr
Match: gi|731335456|ref|XP_010678735.1| (PREDICTED: uncharacterized protein LOC104894246 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 282.3 bits (721), Expect = 6.100e-73
Identity = 151/188 (80.32%), Postives = 163/188 (86.70%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MD R A CFAIL+L   TSSAIQ  IG RDE  K  +IT  SPFS ALETLQKQI+Y+F 
Sbjct: 1   MDHRIAACFAILSLLTVTSSAIQ--IGVRDEVSK-DVITKYSPFSTALETLQKQINYTFD 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSV+FRYLLDDID SSK+LN +IAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVSFRYLLDDIDTSSKSLNLKIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSC+VDGMRLGLHKV+RVSH TNSTTPA+VCG+FRAIFGAVALDSG SD AAKVF NVH
Sbjct: 121 ESSCSVDGMRLGLHKVVRVSHNTNSTTPAIVCGSFRAIFGAVALDSGNSDDAAKVFWNVH 180

Query: 181 TRTGELAA 189
           TR G+ AA
Sbjct: 181 TRRGQFAA 185
[Close]
BLAST of Spo04128.1 vs. NCBI nr
Match: gi|297733813|emb|CBI15060.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 208.0 bits (528), Expect = 1.500e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1 

		  

Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 4   FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 63

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 64  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 123

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 124 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 173
[Close]
BLAST of Spo04128.1 vs. NCBI nr
Match: gi|731425278|ref|XP_002280078.2| (PREDICTED: uncharacterized protein NFD2 [Vitis vinifera])

HSP 1 Score: 208.0 bits (528), Expect = 1.500e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1 

		  

Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 19  FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 78

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 79  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 138

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 139 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 188
[Close]
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177200 PE=4 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 4.200e-97
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 190
[Close]
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHW2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_177200 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.100e-94
Identity = 188/190 (98.95%), Postives = 188/190 (98.95%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MDRRTAVCFAILTLAMATSSAI  QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ
Sbjct: 1   MDRRTAVCFAILTLAMATSSAI--QIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH
Sbjct: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180

Query: 181 TRTGELAADF 191
           TRTGELAADF
Sbjct: 181 TRTGELAADF 188
[Close]
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAD1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116710 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.200e-73
Identity = 151/188 (80.32%), Postives = 163/188 (86.70%), Query Frame = 1 

		  

Query: 1   MDRRTAVCFAILTLAMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQ 60
           MD R A CFAIL+L   TSSAIQ  IG RDE  K  +IT  SPFS ALETLQKQI+Y+F 
Sbjct: 1   MDHRIAACFAILSLLTVTSSAIQ--IGVRDEVSK-DVITKYSPFSTALETLQKQINYTFD 60

Query: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNV 120
           RIDLLRRAMTHASFSEENNRALSILGTSIIETSV+FRYLLDDID SSK+LN +IAEVCNV
Sbjct: 61  RIDLLRRAMTHASFSEENNRALSILGTSIIETSVSFRYLLDDIDTSSKSLNLKIAEVCNV 120

Query: 121 ESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 180
           ESSC+VDGMRLGLHKV+RVSH TNSTTPA+VCG+FRAIFGAVALDSG SD AAKVF NVH
Sbjct: 121 ESSCSVDGMRLGLHKVVRVSHNTNSTTPAIVCGSFRAIFGAVALDSGNSDDAAKVFWNVH 180

Query: 181 TRTGELAA 189
           TR G+ AA
Sbjct: 181 TRRGQFAA 185
[Close]
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: D7SHV0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g08000 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.000e-50
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1 

		  

Query: 9   FAILTL-AMATSSAIQLQIGARDEFRKTQIITTNSPFSIALETLQKQIDYSFQRIDLLRR 68
           F ILTL  +A  SA Q   G  +E R   I+  +SPFS+ALETLQKQI Y+FQ I LLRR
Sbjct: 4   FIILTLFLLAKFSAFQAHAG--NEVRDP-ILKPSSPFSLALETLQKQIGYTFQSIGLLRR 63

Query: 69  AMTHASFSEENNRALSILGTSIIETSVAFRYLLDDIDISSKTLNREIAEVCNVESSCAVD 128
           AMTH+SFSEENN+ALSILG S IETSV+ +YL  DI+ S+K LNR I+E+  VESSCAVD
Sbjct: 64  AMTHSSFSEENNKALSILGASTIETSVSLQYLKKDIEASAKDLNRRISEISQVESSCAVD 123

Query: 129 GMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFGAVALDSGKSDAAAKVFLNVH 181
            MRLGL KV+RVS KTN++TPAVVCGAFRAIFGA+A+D+GKSD A KVF +VH
Sbjct: 124 AMRLGLQKVIRVSPKTNASTPAVVCGAFRAIFGAIAMDTGKSDDAGKVFWSVH 173
[Close]
BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QFA7_GLYSO (Ribonuclease 3 OS=Glycine soja GN=glysoja_006885 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.600e-50
Identity = 102/147 (69.39%), Postives = 124/147 (84.35%), Query Frame = 1 

		  

Query: 34  KTQIITTNSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETS 93
           K ++   +SPFS ALETLQKQ+ Y+F+ IDLLRRAMTHASFSEENN+A +ILG S+IETS
Sbjct: 31  KLRLKPLSSPFSTALETLQKQLGYTFKSIDLLRRAMTHASFSEENNKAFAILGASVIETS 90

Query: 94  VAFRYLLDDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 153
           V+F  L  D+D+SSK LNR ++++ NV+SSCAVDG RLGLHKV+RVS KTNS+ PAVVCG
Sbjct: 91  VSFHLLSRDVDLSSKELNRRLSQITNVDSSCAVDGTRLGLHKVVRVSPKTNSSAPAVVCG 150

Query: 154 AFRAIFGAVALDSGKSDAAAKVFLNVH 181
           AFRAIFGAVA+D+GKSD A  VF N+H
Sbjct: 151 AFRAIFGAVAIDTGKSDDAGNVFWNLH 177
[Close]
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: NFD2_ARATH (Protein NUCLEAR FUSION DEFECTIVE 2 OS=Arabidopsis thaliana GN=NFD2 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.500e-42
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 1 

		  

Query: 41  NSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLL 100
           +SPF+  L  LQ QI Y F  I+LLRRAMTHASFS+ENN+ALSI GT IIET+V+ ++L 
Sbjct: 41  SSPFATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLA 100

Query: 101 DDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFG 160
            DIDISSK L R I+EV NVESSCA+DG RLGL K++RVS KT+++  A++C  FRAIFG
Sbjct: 101 KDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFG 160

Query: 161 AVALDSGKSDAAAKVFLNVH-TRTGELAA 189
           A+A+D+G  D A KVF  VH  R G L +
Sbjct: 161 AIAIDAGTVDEAIKVFWKVHGARAGRLVS 189
[Close]
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_THIDA (Ribonuclease 3 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rnc PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.500e-7
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1 

		  

Query: 51  LQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLLDDI-DISSKT 110
           LQ+ + Y+F R  LL++A+TH S+   NN  L  LG S++  SVA R L D   D+   +
Sbjct: 10  LQQALGYTFSRSGLLQQALTHRSYGALNNERLEFLGDSVLNCSVA-RALYDAFPDLPEGS 69

Query: 111 LNREIAEVCNVESSCAVDG-MRLGLHKVLRVSH----KTNSTTPAVVCGAFRAIFGAVAL 170
           L+R  A +   E+   + G +RLG    LR+            P+++  A  ++FGAV L
Sbjct: 70  LSRLRANLVRQETLAEIAGALRLG--DSLRLGEGELKSGGFRRPSILADALESLFGAVFL 129

Query: 171 DSGKSDA 172
           D+G  +A
Sbjct: 130 DAGFDEA 133
[Close]
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_PHEZH (Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 42/136 (30.88%), Postives = 64/136 (47.06%), Query Frame = 1 

		  

Query: 47  ALETLQKQIDYSFQRIDLLRRAMTHASFSE-----ENNRALSILGTSIIETSVAFRYLLD 106
           A+  L+++I Y F   DLL RA+THAS  +      +N  L  LG  ++    A R +  
Sbjct: 7   AVAELERRIGYVFTDRDLLERALTHASVGDGARAVRHNERLEFLGDRVLNLCAAERLMAL 66

Query: 107 DIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNST----TPAVVCGAFRA 166
           D D     ++R +A + N   +CA    R GL + LR+S          + AV+  A  A
Sbjct: 67  DPDAREGEMSRLLASLVNYH-ACARAAKRAGLQEALRLSASATKVGARKSDAVLGDACEA 126

Query: 167 IFGAVALDSGKSDAAA 174
           +  A+ +D G   A A
Sbjct: 127 LIAALYIDGGLETARA 141
[Close]
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_CUPMC (Ribonuclease 3 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 43/142 (30.28%), Postives = 72/142 (50.70%), Query Frame = 1 

		  

Query: 46  IALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYL-----L 105
           + L+ LQ+++ Y F + +LL++A+TH S S ++N  L  LG S++  +VA         L
Sbjct: 1   MTLDALQQRLGYRFSKPELLQQALTHRSHSAQHNERLEFLGDSVLNCAVADMLFGMFGKL 60

Query: 106 DDIDISSKTLN-------REIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 165
           D+ D+S    N        EIA++  +      D +RLG  ++     +     P+++  
Sbjct: 61  DEGDLSRVRANLVKQQALYEIAQMLQLS-----DALRLGEGELKSGGFR----RPSILAD 120

Query: 166 AFRAIFGAVALDSGKSDAAAKV 176
           A  AI GAV LD+G   A A +
Sbjct: 121 ALEAIVGAVFLDAGFDAARALI 133
[Close]
BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Match: RNC_RALPJ (Ribonuclease 3 OS=Ralstonia pickettii (strain 12J) GN=rnc PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 9.900e-7
Identity = 43/134 (32.09%), Postives = 69/134 (51.49%), Query Frame = 1 

		  

Query: 46  IALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYL-----L 105
           ++L+ LQ+++ Y F + +LL++A+TH S S  +N  L  LG SI+  +VA         L
Sbjct: 1   MSLDALQQRLGYRFSKPELLQQALTHRSHSAMHNERLEFLGDSILNCAVADMLYGMFGKL 60

Query: 106 DDIDISSKTLN-------REIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCG 165
           D+ D+S    N        EIA++  +      D +RLG  ++     +     P+++  
Sbjct: 61  DEGDLSRVRANLVKQQALYEIAQMLQLP-----DALRLGEGELKSGGFR----RPSILAD 120

Query: 166 AFRAIFGAVALDSG 168
           A  AIFGAV LD G
Sbjct: 121 ALEAIFGAVFLDGG 125
[Close]
BLAST of Spo04128.1 vs. TAIR (Arabidopsis)
Match: AT1G24450.1 (Ribonuclease III family protein)

HSP 1 Score: 173.3 bits (438), Expect = 1.400e-43
Identity = 91/149 (61.07%), Postives = 113/149 (75.84%), Query Frame = 1 

		  

Query: 41  NSPFSIALETLQKQIDYSFQRIDLLRRAMTHASFSEENNRALSILGTSIIETSVAFRYLL 100
           +SPF+  L  LQ QI Y F  I+LLRRAMTHASFS+ENN+ALSI GT IIET+V+ ++L 
Sbjct: 41  SSPFATDLAKLQTQIGYKFNNINLLRRAMTHASFSQENNKALSIFGTHIIETAVSLQFLA 100

Query: 101 DDIDISSKTLNREIAEVCNVESSCAVDGMRLGLHKVLRVSHKTNSTTPAVVCGAFRAIFG 160
            DIDISSK L R I+EV NVESSCA+DG RLGL K++RVS KT+++  A++C  FRAIFG
Sbjct: 101 KDIDISSKALGRLISEVSNVESSCALDGDRLGLGKIIRVSTKTDASNSAILCTGFRAIFG 160

Query: 161 AVALDSGKSDAAAKVFLNVH-TRTGELAA 189
           A+A+D+G  D A KVF  VH  R G L +
Sbjct: 161 AIAIDAGTVDEAIKVFWKVHGARAGRLVS 189
The following BLAST results are available for this feature:
BLAST of Spo04128.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902163620|gb|KNA06856.1|6.1e-97100.hypothetical protein SOVF_1772... [more]
gi|902163621|gb|KNA06857.1|1.6e-9498.9hypothetical protein SOVF_1772... [more]
gi|731335456|ref|XP_010678735.1|6.1e-7380.3PREDICTED: uncharacterized pro... [more]
gi|297733813|emb|CBI15060.3|1.5e-5067.0unnamed protein product [Vitis... [more]
gi|731425278|ref|XP_002280078.2|1.5e-5067.0PREDICTED: uncharacterized pro... [more]
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BLAST of Spo04128.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QJW2_SPIOL4.2e-97100.Uncharacterized protein OS=Spi... [more]
A0A0K9QHW2_SPIOL1.1e-9498.9Uncharacterized protein OS=Spi... [more]
A0A0J8CAD1_BETVU4.2e-7380.3Uncharacterized protein OS=Bet... [more]
D7SHV0_VITVI1.0e-5067.0Putative uncharacterized prote... [more]
A0A0B2QFA7_GLYSO6.6e-5069.3Ribonuclease 3 OS=Glycine soja... [more]
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BLAST of Spo04128.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NFD2_ARATH2.5e-4261.0Protein NUCLEAR FUSION DEFECTI... [more]
RNC_THIDA1.5e-734.6Ribonuclease 3 OS=Thiobacillus... [more]
RNC_PHEZH9.9e-730.8Ribonuclease 3 OS=Phenylobacte... [more]
RNC_CUPMC9.9e-730.2Ribonuclease 3 OS=Cupriavidus ... [more]
RNC_RALPJ9.9e-732.0Ribonuclease 3 OS=Ralstonia pi... [more]
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BLAST of Spo04128.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G24450.11.4e-4361.0Ribonuclease III family protei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 48..178
score: 6.3
IPR000999Ribonuclease III domainPFAMPF14622Ribonucleas_3_3coord: 63..175
score: 5.1
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 63..188
score: 8.8
IPR000999Ribonuclease III domainPROFILEPS50142RNASE_3_2coord: 48..167
score: 1
IPR000999Ribonuclease III domainunknownSSF69065RNase III domain-likecoord: 41..179
score: 3.14
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 42..180
score: 5.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051607 defense response to virus
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0006281 DNA repair
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0042023 DNA endoreduplication
biological_process GO:0051301 cell division
biological_process GO:0043248 proteasome assembly
biological_process GO:0006396 RNA processing
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0008152 metabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0007064 mitotic sister chromatid cohesion
cellular_component GO:0008278 cohesin complex
cellular_component GO:0016363 nuclear matrix
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005737 cytoplasm
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0000775 chromosome, centromeric region
cellular_component GO:0000785 chromatin
cellular_component GO:0005773 vacuole
cellular_component GO:0005819 spindle
molecular_function GO:0016881 acid-amino acid ligase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0004842 ubiquitin-protein transferase activity
RNA-Seq Expression