Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAGTAGTATTATTTAGTGCCCTGTACGTTCATGGCCTAACTAAATTAAATTCGTTTAACTAAAATATGTACTACTAGTCTACTACTCCTTCACTTCCACCAGGCACCAGCCCAGCCCATGAGCCCAGTCTGCTAAGTGCTACCTTTGTGAATCTTGTTTCTGACTAATGACTCATCAGCTCATCTCATCTCATCTCATCTAGTGCTTTCCTCTCTACCTTTTCCTTTTTCCTCTTCCTTTTTCTTTGGTGGAGGAGCTCTTCTAATAAATTATTCTTACTTGTCTATTTATTCCTTCCTCAAACTGGAAAACGCAAACCGCAAAACCCGCAAAACCTCACTGCTTTTTATTTCTTCTTCATTCATTAAGATAGATTTTTTGCTGATTCCCAGGCTCCCAGCCATGTCTTGATCTCACTCCATGGTCGATATATTGTCCATTGAAATTAAGCTAAGCAAGTAAGCAATTATCATTAAACGCTACACAGCCGTACAGTCACACACTCGATCTAATCCTGGTATGTACAAGCTAGTATAAAAGTATAATATATAGTACTTCGTATGCATTATTATCATTATATTATATTCATTTTAAAATATATAGAGTTGACATTCATTACAAGTGAGCTTAATTAATTAATTAATTAATTATAGCTAATTCATTAGTGCTTACTTTACGACATTCTTCTGTTTTTTAGTCATTTAATAATCCGACTTTATTTTGTGAAATTACTATTACAAATTCAAGCCTCGTCACCCCTCACCATTGGCCCTAGCTGTATAAAGCCGTACACTCATACTCATAAGAGATGCACCATGTTTTCATTTTGTTCGCCATCTAGCTAGTACACCAGTCGTACGCCACTCGTGCCACAGCAACTGGTAATTAAACCGTTAATTAACAAGGCCATAACGGTAGTCTCCGAACACAGATGTCATTCACACGCGTTTCCCTAAAACTCTAGTCATATGTACAAGATTCAAAACCTACACATTGTTAGGCTCTATTCTCTTCGTTTGGACCGGTCTGATTTTTCTAGTACGTTTTTAGTATAGCTAGGCTGTTAAATCGGGTATGCTTTGTTCTAAATTTTTTGGTATGTTCTGGTATATCTATAATAACAAGTGTTATTATAAGATACGAATTGAAGTACGTACGTATGATAATATGTGGTATTTTCTTCATTGTTGTGCAGTAGTGCAGCAATGGGAAGGTGGAAGAGGGAGGTTTTGGTGATAATAATATTGTATTTATTGATCTCAACGATGGGAGTGACAGAGGGGAAAAAGGGAAGGAGGAATATAAATAGAAAGCGGCATTCAGCAGTTTCAAGAGCGTTAGAAATAATAAACGGGACAAGTAATAGTGATGCCTACTGCCTTAGTTGGAGGATGGCAGTGGAAGCTAACAACATGAGAGGATGGCGAACAATCCCTATTCAGTGTTGGCGTCATGTCCAAGGTTACATGGTAGGAGGTCAATATTCTCGCGATATTAGCTTGATTATTGACCAAATTTATGCATATCTAGATACTGTCTCCCCCTTCGCTGATTCCTTGGATGCTTGGATCTTTGATGTTGATGACACTTGCCTCTCTAACCTCTTTTATTATCAAGCCAGACGCTTCGGGTAACTCCTTAACTAATCAACCTTTACTTAATTACATTGCAATTCATTTTAACAAATTAAGTATTGACTCCGTACCAATGTACCATGCATACCTTTTATTATGTTATAAAGGTGACTTTATTTTTTCAATTCATCATGTCACTAAAAGAGTATATATGTGTATTCCATTTTACTAATAAAACAATCAAGATAGTAATATTAGTTGGTATTGAATTTAAAACTAAAACAAATCCAATAATTAATTAATAGAAAAATGAGGAACAATAACTTATTACTTACCTAGCCAGAATTGCAAAAAGAGCTTGAAAATTATTTCATGGAGATAAGGGATGAGTGAAAATCATTCAATGGAAGAACGAAACTAAGGATATACAATAGTTACATAGGTTCAAATTAGAAAATTAAGGGGCATGAAATTTATTGGAGGTGAATGGACTAAAGGGGTTGAATTTTTTTTTATTTTTTTTTATTGTAGAAGAATGGAACATTAAATTGAAACAAAATAAAATGGGAAGATATTTTTAAGTGAGGACACGTGTTACTCCATATTTCTTGCAAATTTTACTGTTATTAAATACGTAGTAGTAGTATATGTTTATATGAATATTTATGTTATGTGATTTAATTTGTAGGTGTGATCCATATAACCCAATGGAGTTCAAAATATGGGCATCTAAAGGAGAGAGTCTAGCCATTCCGGCAGTGTTGGAAATATTTTACAGATTGATTGAAGTCGGATTTAAGGTGATGTTATTAACGGGAAGGGACGAAGAGACCCTTGGCGAAGCTACTGTTGAAAATCTGGTTAACCAAGGTTTTGTTGGCTATGAACGCCTCATTATGAGGTTAGTCACCTTCATATAGCACTTTGTTTAAATTAATTTGGTTGGATAATGGTGTTTTAATTATGATTTTACTAATTAATTTTGTGTTGAAATTAGGTCGCCGGAGTATAGAGGACTAAGTGCAATGATGTACAAGTCGGAGATACGTAGACAATTAATGGAGCAAGGGTATAGGGTTTGGGGAAATGTTGGAGATCAATGGAGTGATCTTCAAGGCAACTATACCGGTGACCGTACATTTAAACTTCCCAATCCCATGTACTTCGTTCCTTGATCCATTCTACACACCCATGTTTGGTGCTTATTTCATACGTCATGTATGTAAATGTGTTAATCATGAAATGAAATTGCGATGAATTTTACAAAGAAATCGTATCAAAAGTACTTTCTCCGTTTCAAAATAATTGCACCATTTTTACTTTCACATTTGTCAACGCATAAAATAACTTTGACCATCCATATTTACCGTTATGTATTAGTATAATTATATAAAGTTGATATATTCAAAATATACATTGAGACAAGCAAAGATAATATATAATTGTATTTATTTCCAAAAACATTTACTTCGTACTACCTCTATTTCAAAATAATATTTACATTTTCTGTTTTATTCCGTTTTAAAATATTCTTT TATAGTAGTATTATTTAGTGCCCTGTACGTTCATGGCCTAACTAAATTAAATTCGTTTAACTAAAATATGTACTACTAGTCTACTACTCCTTCACTTCCACCAGGCACCAGCCCAGCCCATGAGCCCAGTCTGCTAAGTGCTACCTTTGTGAATCTTGTTTCTGACTAATGACTCATCAGCTCATCTCATCTCATCTCATCTAGTGCTTTCCTCTCTACCTTTTCCTTTTTCCTCTTCCTTTTTCTTTGGTGGAGGAGCTCTTCTAATAAATTATTCTTACTTGTCTATTTATTCCTTCCTCAAACTGGAAAACGCAAACCGCAAAACCCGCAAAACCTCACTGCTTTTTATTTCTTCTTCATTCATTAAGATAGATTTTTTGCTGATTCCCAGGCTCCCAGCCATGTCTTGATCTCACTCCATGGTCGATATATTGTCCATTGAAATTAAGCTAAGCAAGTAAGCAATTATCATTAAACGCTACACAGCCGTACAGTCACACACTCGATCTAATCCTGTAGTGCAGCAATGGGAAGGTGGAAGAGGGAGGTTTTGGTGATAATAATATTGTATTTATTGATCTCAACGATGGGAGTGACAGAGGGGAAAAAGGGAAGGAGGAATATAAATAGAAAGCGGCATTCAGCAGTTTCAAGAGCGTTAGAAATAATAAACGGGACAAGTAATAGTGATGCCTACTGCCTTAGTTGGAGGATGGCAGTGGAAGCTAACAACATGAGAGGATGGCGAACAATCCCTATTCAGTGTTGGCGTCATGTCCAAGGTTACATGGTAGGAGGTCAATATTCTCGCGATATTAGCTTGATTATTGACCAAATTTATGCATATCTAGATACTGTCTCCCCCTTCGCTGATTCCTTGGATGCTTGGATCTTTGATGTTGATGACACTTGCCTCTCTAACCTCTTTTATTATCAAGCCAGACGCTTCGGGTGTGATCCATATAACCCAATGGAGTTCAAAATATGGGCATCTAAAGGAGAGAGTCTAGCCATTCCGGCAGTGTTGGAAATATTTTACAGATTGATTGAAGTCGGATTTAAGGTGATGTTATTAACGGGAAGGGACGAAGAGACCCTTGGCGAAGCTACTGTTGAAAATCTGGTTAACCAAGGTTTTGTTGGCTATGAACGCCTCATTATGAGGTCGCCGGAGTATAGAGGACTAAGTGCAATGATGTACAAGTCGGAGATACGTAGACAATTAATGGAGCAAGGGTATAGGGTTTGGGGAAATGTTGGAGATCAATGGAGTGATCTTCAAGGCAACTATACCGGTGACCGTACATTTAAACTTCCCAATCCCATGTACTTCGTTCCTTGATCCATTCTACACACCCATGTTTGGTGCTTATTTCATACGTCATGTATGTAAATGTGTTAATCATGAAATGAAATTGCGATGAATTTTACAAAGAAATCGTATCAAAAGTACTTTCTCCGTTTCAAAATAATTGCACCATTTTTACTTTCACATTTGTCAACGCATAAAATAACTTTGACCATCCATATTTACCGTTATGTATTAGTATAATTATATAAAGTTGATATATTCAAAATATACATTGAGACAAGCAAAGATAATATATAATTGTATTTATTTCCAAAAACATTTACTTCGTACTACCTCTATTTCAAAATAATATTTACATTTTCTGTTTTATTCCGTTTTAAAATATTCTTT ATGGGAAGGTGGAAGAGGGAGGTTTTGGTGATAATAATATTGTATTTATTGATCTCAACGATGGGAGTGACAGAGGGGAAAAAGGGAAGGAGGAATATAAATAGAAAGCGGCATTCAGCAGTTTCAAGAGCGTTAGAAATAATAAACGGGACAAGTAATAGTGATGCCTACTGCCTTAGTTGGAGGATGGCAGTGGAAGCTAACAACATGAGAGGATGGCGAACAATCCCTATTCAGTGTTGGCGTCATGTCCAAGGTTACATGGTAGGAGGTCAATATTCTCGCGATATTAGCTTGATTATTGACCAAATTTATGCATATCTAGATACTGTCTCCCCCTTCGCTGATTCCTTGGATGCTTGGATCTTTGATGTTGATGACACTTGCCTCTCTAACCTCTTTTATTATCAAGCCAGACGCTTCGGGTGTGATCCATATAACCCAATGGAGTTCAAAATATGGGCATCTAAAGGAGAGAGTCTAGCCATTCCGGCAGTGTTGGAAATATTTTACAGATTGATTGAAGTCGGATTTAAGGTGATGTTATTAACGGGAAGGGACGAAGAGACCCTTGGCGAAGCTACTGTTGAAAATCTGGTTAACCAAGGTTTTGTTGGCTATGAACGCCTCATTATGAGGTCGCCGGAGTATAGAGGACTAAGTGCAATGATGTACAAGTCGGAGATACGTAGACAATTAATGGAGCAAGGGTATAGGGTTTGGGGAAATGTTGGAGATCAATGGAGTGATCTTCAAGGCAACTATACCGGTGACCGTACATTTAAACTTCCCAATCCCATGTACTTCGTTCCTTGA MGRWKREVLVIIILYLLISTMGVTEGKKGRRNINRKRHSAVSRALEIINGTSNSDAYCLSWRMAVEANNMRGWRTIPIQCWRHVQGYMVGGQYSRDISLIIDQIYAYLDTVSPFADSLDAWIFDVDDTCLSNLFYYQARRFGCDPYNPMEFKIWASKGESLAIPAVLEIFYRLIEVGFKVMLLTGRDEETLGEATVENLVNQGFVGYERLIMRSPEYRGLSAMMYKSEIRRQLMEQGYRVWGNVGDQWSDLQGNYTGDRTFKLPNPMYFVP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04080.1 vs. NCBI nr
Match: gi|902234414|gb|KNA23444.1| (hypothetical protein SOVF_024530 isoform A [Spinacia oleracea]) HSP 1 Score: 562.0 bits (1447), Expect = 5.700e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo04080.1 vs. NCBI nr
Match: gi|902234415|gb|KNA23445.1| (hypothetical protein SOVF_024530 isoform B [Spinacia oleracea]) HSP 1 Score: 551.6 bits (1420), Expect = 7.700e-154 Identity = 266/269 (98.88%), Postives = 268/269 (99.63%), Query Frame = 1
BLAST of Spo04080.1 vs. NCBI nr
Match: gi|731344479|ref|XP_010683443.1| (PREDICTED: acid phosphatase 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 428.7 bits (1101), Expect = 7.500e-117 Identity = 214/276 (77.54%), Postives = 243/276 (88.04%), Query Frame = 1
BLAST of Spo04080.1 vs. NCBI nr
Match: gi|747094656|ref|XP_011095174.1| (PREDICTED: acid phosphatase 1 [Sesamum indicum]) HSP 1 Score: 340.1 bits (871), Expect = 3.500e-90 Identity = 143/221 (64.71%), Postives = 188/221 (85.07%), Query Frame = 1
BLAST of Spo04080.1 vs. NCBI nr
Match: gi|720088778|ref|XP_010244565.1| (PREDICTED: acid phosphatase 1 [Nelumbo nucifera]) HSP 1 Score: 337.0 bits (863), Expect = 3.000e-89 Identity = 146/219 (66.67%), Postives = 187/219 (85.39%), Query Frame = 1
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024530 PE=4 SV=1) HSP 1 Score: 562.0 bits (1447), Expect = 4.000e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV90_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024530 PE=4 SV=1) HSP 1 Score: 551.6 bits (1420), Expect = 5.400e-154 Identity = 266/269 (98.88%), Postives = 268/269 (99.63%), Query Frame = 1
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C316_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g156690 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 5.200e-117 Identity = 214/276 (77.54%), Postives = 243/276 (88.04%), Query Frame = 1
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Match: M4C796_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.100e-87 Identity = 147/219 (67.12%), Postives = 180/219 (82.19%), Query Frame = 1
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Match: A0A078F3V3_BRANA (BnaA03g17920D protein OS=Brassica napus GN=BnaA03g17920D PE=4 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.100e-87 Identity = 147/219 (67.12%), Postives = 180/219 (82.19%), Query Frame = 1
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 1.600e-50 Identity = 95/213 (44.60%), Postives = 136/213 (63.85%), Query Frame = 1
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.000e-41 Identity = 85/222 (38.29%), Postives = 138/222 (62.16%), Query Frame = 1
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 4.400e-40 Identity = 84/225 (37.33%), Postives = 135/225 (60.00%), Query Frame = 1
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2) HSP 1 Score: 160.6 bits (405), Expect = 2.400e-38 Identity = 83/221 (37.56%), Postives = 131/221 (59.28%), Query Frame = 1
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=1 SV=2) HSP 1 Score: 153.7 bits (387), Expect = 2.900e-36 Identity = 80/224 (35.71%), Postives = 133/224 (59.38%), Query Frame = 1
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Match: AT2G38600.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 323.2 bits (827), Expect = 1.600e-88 Identity = 141/216 (65.28%), Postives = 176/216 (81.48%), Query Frame = 1
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Match: AT4G29260.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 207.2 bits (526), Expect = 1.300e-53 Identity = 98/220 (44.55%), Postives = 141/220 (64.09%), Query Frame = 1
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Match: AT4G25150.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 205.3 bits (521), Expect = 4.800e-53 Identity = 96/226 (42.48%), Postives = 145/226 (64.16%), Query Frame = 1
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Match: AT5G51260.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 201.8 bits (512), Expect = 5.300e-52 Identity = 92/215 (42.79%), Postives = 142/215 (66.05%), Query Frame = 1
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Match: AT4G29270.1 (HAD superfamily, subfamily IIIB acid phosphatase ) HSP 1 Score: 199.1 bits (505), Expect = 3.400e-51 Identity = 95/230 (41.30%), Postives = 142/230 (61.74%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04080.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04080.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04080.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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