Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACTTCTTCAAAGTAAGGAAGTTTAGGAAAGCTCGAAAACCAAATTCGCAGGAAGATTTAGAGGAGAAGCCAATTCCACATCCTGGAGAACCAAACAATGAGAATGACAAGCCTAATGGAAAATCAGTTGCAATGGATGCACCTGTTGATGTGGATGAAGATGATGATGATGATTTTATCACAAATGAGGTGAAAAGGAGGTTGAAAGAATTGAGGAGAAACAGTTTCATGGTGCTCATACCTGAAGAGGAAGGTGCTGAAGAAGAAGACGAAGAAGAAGGTGAGACAAGCTCAAGTGAGGGAAGAGATATGGGAACTCAAGTTGAACATCTGTATTGTGATTTTGAATCTATATATGAGAAGTATTGTGAGAGGATGCTCTTCTTTGATCGGATGAGTTCTCAGCAACTCAATGTGGCTGGTACGCGTTGTTCGTTATATATGCTCAAAAGTTATAATCATCCTTTTTCTTTGCAAGGGTTTCATGTCAAAGTTTTTAGCCTTTTAGATTGTATTTGCTCTTGTTTTTGGGGTATCTTTGTTGCCTTGCATCATGCTTGTTAAAATGATATGTTGGCTGCTAAAAAATGTCCTGAAATCCGCTTTCTTGTTCCAACATGTTCCTGAGTGTAAATTGATTTTGGTTTTAGTCTGCAATCTTGAAGATTATGCATTAAGAGGTGTTAGAGCGGAATTTGATTGATCTTAAAAGATTACGGGTGCGTTCTATTCACCTGATTTTCACTTATTTTTTCTGAACTTATCTTATCTGAACGTATCTGAACTTAACTGAACTTATCTGAACTTATTAAAACTTATCAAAACTTATTTTAGTTATAAGTTGTACTTGGTCAACCCTTATTTTTCCTGAACTTATCTTATCTGAACTTATCTGAACTTAACTGAACTTATCTGAACTTATTTTTCCTGAAATAAGTGGAAATAAGGTGAACATAACAGGGCCTACATAATTTACCTTCATACTTAGCTAAAATTGGGTCTTATTACATAATGTACCTTCATCCTACTCAGCAGTCAGCACTTTGAGGAACTATTTCACAGTACCTAGCAATAATGCCACTGAAGTAAGAAAACAAGTTGGTGACCACATTTAATTTACATGCCTCTCACTTTCTCTTGAGAGCATTCAAATAGGAGTGTTATTTGAAATTTAGGATGTTGACACCCCAGTCAAAAATAGTAAGAAAAGGCCTTTTTCTTTTTTAAAGAAAAGGCTTTTGGCTGAACATGTACGTCCAGCCATTTGTTCCGTCTCTTGCATTTCTTTGTGCTCATCTTTGCTTGAGTTTAACTGTTAAAATATGTTTGTTTAGCAATTCGCATTCCCCTTCTTACCTGTTTAAAAGAGACATGATATTGAATCTCAGATGCCAAATGTATATACAAGTATATAGTATGGTCCTCCTATCAAGTCTGTGGCTAACTGGGATTTTATCAAGTTGTATTTTGCCGGCAATACCATATAACAAGTCGCATAAACCTTGCACTTAGGTTGATTATGGCACACGGGTTACTGCTTCCTGTCTAAAAATGCCCTTCTGCTTCACTTTTGTATATGACTGTCTTCTTTTTTTTTTGGTGAAAACGGAAACATTTCATAAACTAAAATTCAGCCTCTTACAATCCGTCAAATGTAAGTTTAAACAATAACTAGGGAGAATGAAGTCAATGTAAATATGACTGTCTTCTGCTGTCCTCAATTTACAGTTATTACTTATTAGTGGAATATAATGCATGGTGGAAATGTTCTAGTTTTGTTGGTTGATCAGTCATGTTCTCTGATTCTGTCAGACTATCCAACACTGTTTTGCTCATATGTTGAGTGATATAATCCTTAAAAGTTTTTACTTGCTATCAGAAATGGTTAGCCTTAGTGTTTTAACTCAATTTTACAAGTTTAAAAATCCTTGCCAACACCAACTGTTTTATAGGAAAAGATTAAACTTGACTCGTATGCTCTTGTACGTGATGCAGGCCCCAGGAGTCCTTCCACACAATCTCCAAGAGCTGCATCTAGAAAGCTTGTATCTTCTTTCCGATGCCTCTCTCTTAAAAAGATGGAAGAACCTGATAGTGACACTGAGCAACTGCAGCAACCAGATGATAGTCCTTCACAGGACCTCGAAACTGCATATGTAGCTCATATTTGCTTGACATGGGAAGCCCTTCACAGTCAGTACACACAGCTGAGGCAGAAGATATCATGCCAACCTGATAATCCTACTTGTTATAACCACTGTGCACAGCTATATCAGCAGTTTGAGGTGCTGTTGCAGAGATTTATTGAAAATGAGCCTTTTGAGCAAGGTTCAAGAGTTGAAAAGTATGCTCGAAGCCGAAATTCTTTGTCCAAGCTACTACAGGTTCCCAAGGTGCAAGGTAAGATCCCGTTTAGGAGAACCTCTGGCATGCTTCTTTTGTCCGGAACTAGTTATCACATCATTCCTACTCATAGTTAAGAAAATGCCACAAATTTACAAAAGACACCCTTTAATCCTTTATGATAGTTGAGTCATGTGGAAATCTAATCATAAACCATTAATTATTAGGAATCTGATAGTGTGTGATTACTAGTTCCAGACCGAGGGAGTACTAATTAAGTTGGACATGTCATCATTTTAATTTACATGTGTCAAAATGAATTATGATTAGTTATAGTGTTACTGAATGGTTCAGGTACCTCTCAAAATGTGGTTGAAGACGAGGAGTCAGAGTACCGAATTCTTGCCCCTGACCTTCTTAAGTTGATTCAGACATCAATCTTGACCTTCTACACATTCTTGAGGATGGACAAGAAAAAAGCTGGTGGGGTTCGCAATCTGTTTGGAAACCAGAATCAAATGACTACGCCTCTTCAACAAGTTCAGTCAGTTGCAGACAAGGTAATTCCGTTGTCAGATTCAGGTTTTTTCTTGTCAGTGTCCTTGATAGTTTGATTCGCTGCATGATTATACATACAGTAGCATGTCTAGTGCATCTGAAAATTCTGTGATCCATTTCAATTCTCAGTTTGTTCCTGACCTTAGTAGTTAGTCCTAGGTTGCGATTGAGTTTGCATCAATGCGTAAGGGCTCCGTTTTGGTTTGGTGTAAAACATTTTCAGTGAAAATGACATTTTCCAAAGGGAAAACACAATTCCAAAGTAGTTTTCCTTTGTTTGGTTTCTTAAAAGAAAATTAATATAAAAAGGAAAATGGGAGAAAATGGGTGAAGATAGAGGGGAAGAAGGAAGAAGAGGTAAGGTGGAAAAGTGATTTCCCTTCCTTTTTAAATGAAAAAGGTTTTTACGGCTTTGGAGGGGTGATGGAAAATTGTTTTTCATCCATTGTCAAACCAAACAACGTAAACTGATTAAAAAGGGACAATCGTTTTCATGTACACCAAACCAAACGGAGCCCTAGAGGGAATTTTTTTTTTTTCTTCCTTTTGGTGGTGGCAATGTCAAAAGCACATCAAAGGGTGAAAGGAAAAAGGTCTAATGTATGCATTTATCATTGACAAATGATTGCAGAAAGGGTTGAAACTGAAGGAATTGCGCAAGAAGAAAAGCTTTAAAAAGAAGGCATGGCCATCAATGCAGGAAGAAGTGTTTCTGCTCTTAAGTCTCATTGATGCCAAAGTTGTGTCAAGGGTATTGAGAATGGCTAGGATAACCAAAGACCAATTGCTTTGGTGTGAAGATAAGATGAGAAAACTTGATTTAACAGACGGGAAGCTACACAGGGATCCTTCTCCCATTCTCTTTCCCTGTTGATGATTCTTCGCCATTATGTTCAAACTCTCCTTCATTGGACTCTTCGTGTATAGCCTTTTTCCAATTCCTGCTTTTGAGGCACAATGCGGTGGAGATTTTGTGGAATGCTGCAAGTAATTAGAAGTTAATTAGTAGTTACTCGTATGTTCTACCGTCATTGAGATGCTGATTAATCCTTGGGTGTACGCGAGAAATAATCGCATAAAATGTATTGGCTTCTGACTTATCATATGCTGGAAGAGTCATTAGATTATGGCACCCTTGACTAATTAAGTAATTATGTAGATGGGCATGAATATTTGGTGATCTGCTACTAGTAATTTCATAATCAATGGCTATGATCCCTTCTCTCCTG ATGGACTTCTTCAAAGTAAGGAAGTTTAGGAAAGCTCGAAAACCAAATTCGCAGGAAGATTTAGAGGAGAAGCCAATTCCACATCCTGGAGAACCAAACAATGAGAATGACAAGCCTAATGGAAAATCAGTTGCAATGGATGCACCTGTTGATGTGGATGAAGATGATGATGATGATTTTATCACAAATGAGGTGAAAAGGAGGTTGAAAGAATTGAGGAGAAACAGTTTCATGGTGCTCATACCTGAAGAGGAAGGTGCTGAAGAAGAAGACGAAGAAGAAGGTGAGACAAGCTCAAGTGAGGGAAGAGATATGGGAACTCAAGTTGAACATCTGTATTGTGATTTTGAATCTATATATGAGAAGTATTGTGAGAGGATGCTCTTCTTTGATCGGATGAGTTCTCAGCAACTCAATGTGGCTGGCCCCAGGAGTCCTTCCACACAATCTCCAAGAGCTGCATCTAGAAAGCTTGTATCTTCTTTCCGATGCCTCTCTCTTAAAAAGATGGAAGAACCTGATAGTGACACTGAGCAACTGCAGCAACCAGATGATAGTCCTTCACAGGACCTCGAAACTGCATATGTAGCTCATATTTGCTTGACATGGGAAGCCCTTCACAGTCAGTACACACAGCTGAGGCAGAAGATATCATGCCAACCTGATAATCCTACTTGTTATAACCACTGTGCACAGCTATATCAGCAGTTTGAGGTGCTGTTGCAGAGATTTATTGAAAATGAGCCTTTTGAGCAAGGTTCAAGAGTTGAAAAGTATGCTCGAAGCCGAAATTCTTTGTCCAAGCTACTACAGGTTCCCAAGGTGCAAGGTACCTCTCAAAATGTGGTTGAAGACGAGGAGTCAGAGTACCGAATTCTTGCCCCTGACCTTCTTAAGTTGATTCAGACATCAATCTTGACCTTCTACACATTCTTGAGGATGGACAAGAAAAAAGCTGGTGGGGTTCGCAATCTGTTTGGAAACCAGAATCAAATGACTACGCCTCTTCAACAAGTTCAGTCAGTTGCAGACAAGAAAGGGTTGAAACTGAAGGAATTGCGCAAGAAGAAAAGCTTTAAAAAGAAGGCATGGCCATCAATGCAGGAAGAAGTGTTTCTGCTCTTAAGTCTCATTGATGCCAAAGTTGTGTCAAGGGTATTGAGAATGGCTAGGATAACCAAAGACCAATTGCTTTGGTGTGAAGATAAGATGAGAAAACTTGATTTAACAGACGGGAAGCTACACAGGGATCCTTCTCCCATTCTCTTTCCCTGTTGATGATTCTTCGCCATTATGTTCAAACTCTCCTTCATTGGACTCTTCGTGTATAGCCTTTTTCCAATTCCTGCTTTTGAGGCACAATGCGGTGGAGATTTTGTGGAATGCTGCAAGTAATTAGAAGTTAATTAGTAGTTACTCGTATGTTCTACCGTCATTGAGATGCTGATTAATCCTTGGGTGTACGCGAGAAATAATCGCATAAAATGTATTGGCTTCTGACTTATCATATGCTGGAAGAGTCATTAGATTATGGCACCCTTGACTAATTAAGTAATTATGTAGATGGGCATGAATATTTGGTGATCTGCTACTAGTAATTTCATAATCAATGGCTATGATCCCTTCTCTCCTG ATGGACTTCTTCAAAGTAAGGAAGTTTAGGAAAGCTCGAAAACCAAATTCGCAGGAAGATTTAGAGGAGAAGCCAATTCCACATCCTGGAGAACCAAACAATGAGAATGACAAGCCTAATGGAAAATCAGTTGCAATGGATGCACCTGTTGATGTGGATGAAGATGATGATGATGATTTTATCACAAATGAGGTGAAAAGGAGGTTGAAAGAATTGAGGAGAAACAGTTTCATGGTGCTCATACCTGAAGAGGAAGGTGCTGAAGAAGAAGACGAAGAAGAAGGTGAGACAAGCTCAAGTGAGGGAAGAGATATGGGAACTCAAGTTGAACATCTGTATTGTGATTTTGAATCTATATATGAGAAGTATTGTGAGAGGATGCTCTTCTTTGATCGGATGAGTTCTCAGCAACTCAATGTGGCTGGCCCCAGGAGTCCTTCCACACAATCTCCAAGAGCTGCATCTAGAAAGCTTGTATCTTCTTTCCGATGCCTCTCTCTTAAAAAGATGGAAGAACCTGATAGTGACACTGAGCAACTGCAGCAACCAGATGATAGTCCTTCACAGGACCTCGAAACTGCATATGTAGCTCATATTTGCTTGACATGGGAAGCCCTTCACAGTCAGTACACACAGCTGAGGCAGAAGATATCATGCCAACCTGATAATCCTACTTGTTATAACCACTGTGCACAGCTATATCAGCAGTTTGAGGTGCTGTTGCAGAGATTTATTGAAAATGAGCCTTTTGAGCAAGGTTCAAGAGTTGAAAAGTATGCTCGAAGCCGAAATTCTTTGTCCAAGCTACTACAGGTTCCCAAGGTGCAAGGTACCTCTCAAAATGTGGTTGAAGACGAGGAGTCAGAGTACCGAATTCTTGCCCCTGACCTTCTTAAGTTGATTCAGACATCAATCTTGACCTTCTACACATTCTTGAGGATGGACAAGAAAAAAGCTGGTGGGGTTCGCAATCTGTTTGGAAACCAGAATCAAATGACTACGCCTCTTCAACAAGTTCAGTCAGTTGCAGACAAGAAAGGGTTGAAACTGAAGGAATTGCGCAAGAAGAAAAGCTTTAAAAAGAAGGCATGGCCATCAATGCAGGAAGAAGTGTTTCTGCTCTTAAGTCTCATTGATGCCAAAGTTGTGTCAAGGGTATTGAGAATGGCTAGGATAACCAAAGACCAATTGCTTTGGTGTGAAGATAAGATGAGAAAACTTGATTTAACAGACGGGAAGCTACACAGGGATCCTTCTCCCATTCTCTTTCCCTGTTGA MDFFKVRKFRKARKPNSQEDLEEKPIPHPGEPNNENDKPNGKSVAMDAPVDVDEDDDDDFITNEVKRRLKELRRNSFMVLIPEEEGAEEEDEEEGETSSSEGRDMGTQVEHLYCDFESIYEKYCERMLFFDRMSSQQLNVAGPRSPSTQSPRAASRKLVSSFRCLSLKKMEEPDSDTEQLQQPDDSPSQDLETAYVAHICLTWEALHSQYTQLRQKISCQPDNPTCYNHCAQLYQQFEVLLQRFIENEPFEQGSRVEKYARSRNSLSKLLQVPKVQGTSQNVVEDEESEYRILAPDLLKLIQTSILTFYTFLRMDKKKAGGVRNLFGNQNQMTTPLQQVQSVADKKGLKLKELRKKKSFKKKAWPSMQEEVFLLLSLIDAKVVSRVLRMARITKDQLLWCEDKMRKLDLTDGKLHRDPSPILFPC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03908.1 vs. NCBI nr
Match: gi|902201199|gb|KNA13931.1| (hypothetical protein SOVF_112040 [Spinacia oleracea]) HSP 1 Score: 830.1 bits (2143), Expect = 1.800e-237 Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 1
BLAST of Spo03908.1 vs. NCBI nr
Match: gi|731365359|ref|XP_010694483.1| (PREDICTED: uncharacterized protein LOC104907272 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 705.3 bits (1819), Expect = 6.500e-200 Identity = 361/426 (84.74%), Postives = 393/426 (92.25%), Query Frame = 1
BLAST of Spo03908.1 vs. NCBI nr
Match: gi|731365355|ref|XP_010694481.1| (PREDICTED: uncharacterized protein LOC104907272 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 698.7 bits (1802), Expect = 6.100e-198 Identity = 361/432 (83.56%), Postives = 393/432 (90.97%), Query Frame = 1
BLAST of Spo03908.1 vs. NCBI nr
Match: gi|225443383|ref|XP_002266749.1| (PREDICTED: uncharacterized protein LOC100249551 [Vitis vinifera]) HSP 1 Score: 546.6 bits (1407), Expect = 3.900e-152 Identity = 290/426 (68.08%), Postives = 337/426 (79.11%), Query Frame = 1
BLAST of Spo03908.1 vs. NCBI nr
Match: gi|147854313|emb|CAN79115.1| (hypothetical protein VITISV_007011 [Vitis vinifera]) HSP 1 Score: 540.0 bits (1390), Expect = 3.600e-150 Identity = 289/427 (67.68%), Postives = 336/427 (78.69%), Query Frame = 1
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R335_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112040 PE=4 SV=1) HSP 1 Score: 830.1 bits (2143), Expect = 1.200e-237 Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 1
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BAE2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093440 PE=4 SV=1) HSP 1 Score: 705.3 bits (1819), Expect = 4.500e-200 Identity = 361/426 (84.74%), Postives = 393/426 (92.25%), Query Frame = 1
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E578_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g093440 PE=4 SV=1) HSP 1 Score: 698.7 bits (1802), Expect = 4.300e-198 Identity = 361/432 (83.56%), Postives = 393/432 (90.97%), Query Frame = 1
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Match: D7SS12_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0054g00820 PE=4 SV=1) HSP 1 Score: 546.6 bits (1407), Expect = 2.700e-152 Identity = 290/426 (68.08%), Postives = 337/426 (79.11%), Query Frame = 1
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Match: A5BN93_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007011 PE=4 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 2.500e-150 Identity = 289/427 (67.68%), Postives = 336/427 (78.69%), Query Frame = 1
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Match: AT3G20260.1 (Protein of unknown function (DUF1666)) HSP 1 Score: 458.4 bits (1178), Expect = 4.900e-129 Identity = 261/441 (59.18%), Postives = 321/441 (72.79%), Query Frame = 1
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Match: AT1G73850.1 (Protein of unknown function (DUF1666)) HSP 1 Score: 170.2 bits (430), Expect = 2.700e-42 Identity = 138/406 (33.99%), Postives = 212/406 (52.22%), Query Frame = 1
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Match: AT5G39785.2 (Protein of unknown function (DUF1666)) HSP 1 Score: 130.2 bits (326), Expect = 3.100e-30 Identity = 114/429 (26.57%), Postives = 211/429 (49.18%), Query Frame = 1
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Match: AT1G69610.1 (Protein of unknown function (DUF1666)) HSP 1 Score: 122.9 bits (307), Expect = 4.900e-28 Identity = 111/393 (28.24%), Postives = 197/393 (50.13%), Query Frame = 1
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Match: AT3G01175.1 (Protein of unknown function (DUF1666)) HSP 1 Score: 72.0 bits (175), Expect = 9.900e-13 Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03908.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03908.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03908.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo03908.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|