Spo03883 (gene)

Overview
NameSpo03883
Typegene
OrganismSpinacia oleracea (Spinach)
Description50S ribosomal protein L7/L12
Locationchr1 : 46469985 .. 46470641 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTGTTCTTGAAATTGAGGCAGCATTTCCCAACTGGGTTCCTCCCAAAACCCTACATTTCATCTCTAATCTCTTCAAAACCCCTAAATTCTACCTGGGTTTATCGCACTTATGCTCAACCTGCTCTCCAAGAACAAGAATTTGAAGAAGTTGAATTTGATCCCAGAAAACTCCCAGCAGATTACGACCCTTCAAAATTCGATCCAACCTCGCATCGAAGCCCACCAAGTGACAGAGTTTTTAGGCTGGTTGATGAGGTTTCATCTCTCACATTGGTAGAAGCAGCTGAGTTAGGTACAGTTTTGATGAAGAAAATGGGGATGAAAGAAGATGAGGTTCCTATTATTGGGGTGTTGAACCCTGGGGCAGCGGCCGGGCTAGCTCAAATGGCGGCGAATTCACCTGCTGGCGTTGCTCAGGAGGAGAAGAAGGAAGAGAAGACTGTGTTTGAGTTGAAGTTGGAGTCATTTGAGGCGGCTTCAAAGATTAAAGTTATTAAGGAGATAAGGGCAGTTACTGAATACGGGTTGAAGGAAGCTAAGGATTTAGTGGAGAAGACACCTTCGATTTTTAAGAAAGGTGTGCCTAAGGAGGAAGCTGAGCAGATTATTGAGAAGATGAAAGCTGTTGGAGCTAAAGTTATCATGGAATGA

mRNA sequence

ATGAGTTTGTTCTTGAAATTGAGGCAGCATTTCCCAACTGGGTTCCTCCCAAAACCCTACATTTCATCTCTAATCTCTTCAAAACCCCTAAATTCTACCTGGGTTTATCGCACTTATGCTCAACCTGCTCTCCAAGAACAAGAATTTGAAGAAGTTGAATTTGATCCCAGAAAACTCCCAGCAGATTACGACCCTTCAAAATTCGATCCAACCTCGCATCGAAGCCCACCAAGTGACAGAGTTTTTAGGCTGGTTGATGAGGTTTCATCTCTCACATTGGTAGAAGCAGCTGAGTTAGGTACAGTTTTGATGAAGAAAATGGGGATGAAAGAAGATGAGGTTCCTATTATTGGGGTGTTGAACCCTGGGGCAGCGGCCGGGCTAGCTCAAATGGCGGCGAATTCACCTGCTGGCGTTGCTCAGGAGGAGAAGAAGGAAGAGAAGACTGTGTTTGAGTTGAAGTTGGAGTCATTTGAGGCGGCTTCAAAGATTAAAGTTATTAAGGAGATAAGGGCAGTTACTGAATACGGGTTGAAGGAAGCTAAGGATTTAGTGGAGAAGACACCTTCGATTTTTAAGAAAGGTGTGCCTAAGGAGGAAGCTGAGCAGATTATTGAGAAGATGAAAGCTGTTGGAGCTAAAGTTATCATGGAATGA

Coding sequence (CDS)

ATGAGTTTGTTCTTGAAATTGAGGCAGCATTTCCCAACTGGGTTCCTCCCAAAACCCTACATTTCATCTCTAATCTCTTCAAAACCCCTAAATTCTACCTGGGTTTATCGCACTTATGCTCAACCTGCTCTCCAAGAACAAGAATTTGAAGAAGTTGAATTTGATCCCAGAAAACTCCCAGCAGATTACGACCCTTCAAAATTCGATCCAACCTCGCATCGAAGCCCACCAAGTGACAGAGTTTTTAGGCTGGTTGATGAGGTTTCATCTCTCACATTGGTAGAAGCAGCTGAGTTAGGTACAGTTTTGATGAAGAAAATGGGGATGAAAGAAGATGAGGTTCCTATTATTGGGGTGTTGAACCCTGGGGCAGCGGCCGGGCTAGCTCAAATGGCGGCGAATTCACCTGCTGGCGTTGCTCAGGAGGAGAAGAAGGAAGAGAAGACTGTGTTTGAGTTGAAGTTGGAGTCATTTGAGGCGGCTTCAAAGATTAAAGTTATTAAGGAGATAAGGGCAGTTACTGAATACGGGTTGAAGGAAGCTAAGGATTTAGTGGAGAAGACACCTTCGATTTTTAAGAAAGGTGTGCCTAAGGAGGAAGCTGAGCAGATTATTGAGAAGATGAAAGCTGTTGGAGCTAAAGTTATCATGGAATGA

Protein sequence

MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLPADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo03883.1Spo03883.1mRNA


Homology
[Close]
BLAST of Spo03883.1 vs. NCBI nr
Match: gi|902238578|gb|KNA25232.1| (hypothetical protein SOVF_008380 [Spinacia oleracea])

HSP 1 Score: 411.4 bits (1056), Expect = 1.000e-111
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP
Sbjct: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
           ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL
Sbjct: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120

Query: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180
           NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE
Sbjct: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180

Query: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME
Sbjct: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 218
[Close]
BLAST of Spo03883.1 vs. NCBI nr
Match: gi|731366864|ref|XP_010695302.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 328.2 bits (840), Expect = 1.100e-86
Identity = 175/218 (80.28%), Postives = 194/218 (88.99%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSL L+LRQHFPTGFLPKP +SS+I+SK LN   +YRTYAQ ALQE E EEVE DPRKLP
Sbjct: 1   MSLILRLRQHFPTGFLPKPNLSSIITSKTLNPNLIYRTYAQSALQE-EVEEVEIDPRKLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
           ADYDPS FDPT+HRSPPS+RVFRLVDEVSSLTL EAA LG++LMKKMGM E+E P+IGVL
Sbjct: 61  ADYDPSNFDPTAHRSPPSERVFRLVDEVSSLTLAEAANLGSILMKKMGMNENEPPVIGVL 120

Query: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180
           NPGA AGLAQMAA   AG AQEEKKEEK+VFELKLESFEAASK+KVIKEIR+ T+ GLKE
Sbjct: 121 NPGAVAGLAQMAAKPAAGDAQEEKKEEKSVFELKLESFEAASKLKVIKEIRSFTDLGLKE 180

Query: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           AKDLVEKTPS FK+GVPK+EAEQIIEK+KAVGA V+ME
Sbjct: 181 AKDLVEKTPSTFKRGVPKDEAEQIIEKLKAVGAIVVME 217
[Close]
BLAST of Spo03883.1 vs. NCBI nr
Match: gi|703123768|ref|XP_010102896.1| (50S ribosomal protein [Morus notabilis])

HSP 1 Score: 255.4 bits (651), Expect = 9.200e-65
Identity = 136/219 (62.10%), Postives = 172/219 (78.54%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSL L+L+ H P GF  KP+ S++++  P N   +++ Y QPA++E+E EEVEFD R+LP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
            DYDP+ FDP+ HRSPP++RVFRLVDE+S LTL E AELG + M+K GM E   P +GV+
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEP--PSVGVM 120

Query: 121 NPGAAAGLAQMA-ANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLK 180
            PG AAGLA MA A   A  A+EEKK EKTVFELKLES+EAASKIK+IKE+R+ T+ GLK
Sbjct: 121 KPG-AAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           EAKDLVEKTPSI KKG+ KEE EQ++EK+K +GAKV++E
Sbjct: 181 EAKDLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216
[Close]
BLAST of Spo03883.1 vs. NCBI nr
Match: gi|645238871|ref|XP_008225880.1| (PREDICTED: 54S ribosomal protein L12, mitochondrial [Prunus mume])

HSP 1 Score: 252.7 bits (644), Expect = 5.900e-64
Identity = 142/219 (64.84%), Postives = 172/219 (78.54%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPAL-QEQEFEEVEFDPRKL 60
           MSL L+LRQH P GF  +P IS L +  P +     + ++QPA  +E+E EEVE D R+L
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGV 120
           PADYDP+ FDPT HRSPP+DRVFRLVDE+SSLTL E AELG+++M+K GMKE   PI+GV
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEP--PIVGV 120

Query: 121 LNPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLK 180
           + PGAA GL  +A   PA  A+EEKK EKTVFELKLESFEAASKIK+IKE+R  T+ GLK
Sbjct: 121 MKPGAA-GLG-LAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRGFTDLGLK 180

Query: 181 EAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           EAKDLVEK PS+ KKG+ KEE EQ+IEK+KAVGAKV++E
Sbjct: 181 EAKDLVEKAPSVLKKGLSKEEGEQLIEKLKAVGAKVVLE 214
[Close]
BLAST of Spo03883.1 vs. NCBI nr
Match: gi|595873779|ref|XP_007212043.1| (hypothetical protein PRUPE_ppa011350mg [Prunus persica])

HSP 1 Score: 251.9 bits (642), Expect = 1.000e-63
Identity = 141/219 (64.38%), Postives = 173/219 (79.00%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPAL-QEQEFEEVEFDPRKL 60
           MSL L+LRQH P GF  +P IS L +  P +     + ++QPA  +E+E EEVE D R+L
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGV 120
           PADYDP+ FDPT HRSPP+DRVFRLVDE+SSLTL E AELG+++M+K GMKE   PI+GV
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEP--PIVGV 120

Query: 121 LNPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLK 180
           + PGAA GL  +A   PA  A+EEKK EKTVFELKLESFEAASKIK+IKE+R+ T+ GLK
Sbjct: 121 MKPGAA-GLG-LAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           EAKDLVEK PS+ KKG+ KEE EQ+IEK+KA+GAKV++E
Sbjct: 181 EAKDLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214
[Close]
BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S283_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008380 PE=3 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 7.000e-112
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP
Sbjct: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
           ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL
Sbjct: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120

Query: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180
           NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE
Sbjct: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180

Query: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME
Sbjct: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 218
[Close]
BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8W0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124090 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 7.700e-87
Identity = 175/218 (80.28%), Postives = 194/218 (88.99%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSL L+LRQHFPTGFLPKP +SS+I+SK LN   +YRTYAQ ALQE E EEVE DPRKLP
Sbjct: 1   MSLILRLRQHFPTGFLPKPNLSSIITSKTLNPNLIYRTYAQSALQE-EVEEVEIDPRKLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
           ADYDPS FDPT+HRSPPS+RVFRLVDEVSSLTL EAA LG++LMKKMGM E+E P+IGVL
Sbjct: 61  ADYDPSNFDPTAHRSPPSERVFRLVDEVSSLTLAEAANLGSILMKKMGMNENEPPVIGVL 120

Query: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180
           NPGA AGLAQMAA   AG AQEEKKEEK+VFELKLESFEAASK+KVIKEIR+ T+ GLKE
Sbjct: 121 NPGAVAGLAQMAAKPAAGDAQEEKKEEKSVFELKLESFEAASKLKVIKEIRSFTDLGLKE 180

Query: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           AKDLVEKTPS FK+GVPK+EAEQIIEK+KAVGA V+ME
Sbjct: 181 AKDLVEKTPSTFKRGVPKDEAEQIIEKLKAVGAIVVME 217
[Close]
BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Match: W9S8M4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_005958 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.400e-65
Identity = 136/219 (62.10%), Postives = 172/219 (78.54%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSL L+L+ H P GF  KP+ S++++  P N   +++ Y QPA++E+E EEVEFD R+LP
Sbjct: 1   MSLVLRLKHHLPNGFYRKPFRSTVVALNPGNINGLWKNYGQPAIKEEEDEEVEFDQRRLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
            DYDP+ FDP+ HRSPP++RVFRLVDE+S LTL E AELG + M+K GM E   P +GV+
Sbjct: 61  TDYDPATFDPSEHRSPPTERVFRLVDEISGLTLAEVAELGAIFMRKRGMTEP--PSVGVM 120

Query: 121 NPGAAAGLAQMA-ANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLK 180
            PG AAGLA MA A   A  A+EEKK EKTVFELKLES+EAASKIK+IKE+R+ T+ GLK
Sbjct: 121 KPG-AAGLAGMALATKAATAAKEEKKPEKTVFELKLESYEAASKIKLIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           EAKDLVEKTPSI KKG+ KEE EQ++EK+K +GAKV++E
Sbjct: 181 EAKDLVEKTPSILKKGLSKEEGEQLVEKLKELGAKVVLE 216
[Close]
BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Match: M5WHF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011350mg PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 7.100e-64
Identity = 141/219 (64.38%), Postives = 173/219 (79.00%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPAL-QEQEFEEVEFDPRKL 60
           MSL L+LRQH P GF  +P IS L +  P +     + ++QPA  +E+E EEVE D R+L
Sbjct: 1   MSLVLRLRQHLPNGFCRRPLISPLAALNPGSLNGFCQNFSQPARKEEEEEEEVEIDQRRL 60

Query: 61  PADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGV 120
           PADYDP+ FDPT HRSPP+DRVFRLVDE+SSLTL E AELG+++M+K GMKE   PI+GV
Sbjct: 61  PADYDPATFDPTEHRSPPTDRVFRLVDEISSLTLAEVAELGSIMMRKKGMKEP--PIVGV 120

Query: 121 LNPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLK 180
           + PGAA GL  +A   PA  A+EEKK EKTVFELKLESFEAASKIK+IKE+R+ T+ GLK
Sbjct: 121 MKPGAA-GLG-LAMKGPAA-AKEEKKPEKTVFELKLESFEAASKIKLIKEVRSFTDLGLK 180

Query: 181 EAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           EAKDLVEK PS+ KKG+ KEE EQ+IEK+KA+GAKV++E
Sbjct: 181 EAKDLVEKAPSVLKKGLSKEEGEQLIEKLKALGAKVVLE 214
[Close]
BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Match: A0A118JVV5_CYNCS (Ribosomal protein L7/L12, chloroplast OS=Cynara cardunculus var. scolymus GN=Ccrd_004098 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.200e-63
Identity = 137/218 (62.84%), Postives = 165/218 (75.69%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSLFL+LR H P GF  K   S LIS   + ST + R ++QPA Q +E EE+E + R+LP
Sbjct: 1   MSLFLRLRHHIPNGFCTKSIRSPLISLASIKSTILTRNFSQPARQVEEEEEIEIEQRRLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
            DYDP+ FDPT HRSPP+DRV+RLVDE+SSLTL E AEL +++MKKMGMKE   P++ V+
Sbjct: 61  TDYDPATFDPTEHRSPPTDRVWRLVDEMSSLTLAEVAELSSIMMKKMGMKEP--PVVAVM 120

Query: 121 NPGAAAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKE 180
            PGAA       A      A+EE K EKT+FELKLE+FEAASKIK+IKE+R+ T+ GLKE
Sbjct: 121 KPGAAG-----VATQGQTAAKEEAKPEKTIFELKLEAFEAASKIKIIKEVRSFTDLGLKE 180

Query: 181 AKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           AKDLVEK P +FKKGV KEE EQIIEKMKAVGAKV+ME
Sbjct: 181 AKDLVEKAPIVFKKGVTKEEGEQIIEKMKAVGAKVVME 211
[Close]
BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.100e-17
Identity = 61/134 (45.52%), Postives = 84/134 (62.69%), Query Frame = 1 

		  

Query: 84  LVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPAGVAQEE 143
           +V+++SSLTL++AAEL   L ++ G+     P+         A +A  A  S A VA   
Sbjct: 7   IVEKLSSLTLLQAAELSKRLEEEWGVSA-AAPV---------AVVASAAGESAAAVA--- 66

Query: 144 KKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVPKEEAEQ 203
              EKT FE+ LE F+A  KI VIKE+RA+TE GLKEAKD VE  P   K GV K+EAE+
Sbjct: 67  ---EKTEFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEE 124

Query: 204 IIEKMKAVGAKVIM 218
           + +K++A GA +I+
Sbjct: 127 LKKKLEAAGATIIL 124
[Close]
BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Match: MNP1_SCHPO (54S ribosomal protein L12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl12 PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 9.300e-17
Identity = 56/139 (40.29%), Postives = 85/139 (61.15%), Query Frame = 1 

		  

Query: 80  RVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPAGV 139
           ++  +VD++SSL+L+E +EL   L +K+ + E        + P AA   A  +A      
Sbjct: 43  QIGEMVDKISSLSLLETSELVKQLKEKLNIAE--------IAPMAAVAPAVASAAPSEEK 102

Query: 140 AQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVPKE 199
           A EEKKEEKT + LKLESF+A SK KVIKE++++    L +AK  VE  P + K+ + KE
Sbjct: 103 APEEKKEEKTTWNLKLESFDAGSKAKVIKEVKSLLGLSLVDAKKFVESAPKVLKENILKE 162

Query: 200 EAEQIIEKMKAVGAKVIME 219
           +AE I  K++ +  KV++E
Sbjct: 163 DAEAIKSKLEKLSCKVVLE 173
[Close]
BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Match: MNP1_YEAST (54S ribosomal protein L12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MNP1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.900e-16
Identity = 63/204 (30.88%), Postives = 109/204 (53.43%), Query Frame = 1 

		  

Query: 21  ISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLPADYDPSKFDPTSHRS---PP 80
           +S  I +K  +S W+ +T   PAL           P  +   ++ +     SH+    P 
Sbjct: 1   MSLRILAKRSSSIWM-KTRVTPAL---------ISPITITTRFNSTTTTAPSHKDDVRPV 60

Query: 81  SDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSP- 140
             ++ ++V ++S LTL+E + L   L   + + E  +P+ G +   A AG   + +++  
Sbjct: 61  DPKISKIVQDISQLTLLETSSLINELKTVLNIPEISMPMGGFMAGAAGAGAGNVPSSTGE 120

Query: 141 --AGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKK 200
             +G  +E K E KTVF +KL+SF+  +K KVIKE++ +    L EAK  VE  P + K+
Sbjct: 121 AGSGAEEEAKPEAKTVFTVKLDSFDTKTKAKVIKEVKGLLGLSLVEAKKFVEAAPKVLKE 180

Query: 201 GVPKEEAEQIIEKMKAVGAKVIME 219
            V K++AE+I + ++ +GAKV +E
Sbjct: 181 NVAKDDAEKIKKTLEDLGAKVSLE 194
[Close]
BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Match: RL7_PROMT (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain NATL2A) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.900e-16
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 1 

		  

Query: 78  SDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPA 137
           S +   ++D + SL+L+EA+EL   + +  G+           +  A+AG+   A  + A
Sbjct: 2   SAKTDEILDSLKSLSLLEASELVKQIEEAFGV-----------SAAASAGVVMAAPGAAA 61

Query: 138 GVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVP 197
           G    +  EEKT FE+ LESFEA+SKIKV+KE+R  T  GL EAK LVE  P   K+G  
Sbjct: 62  GGDGADAAEEKTEFEVVLESFEASSKIKVLKEVRNATGLGLGEAKALVEAAPKTIKEGAT 121

Query: 198 KEEAEQIIEKMKAVGAKVIME 219
           KE+AE + + ++AVG KV ++
Sbjct: 122 KEDAEALKKAIEAVGGKVTLK 131
[Close]
BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Match: RL7_METSB (50S ribosomal protein L7/L12 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-15
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 1 

		  

Query: 83  RLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPAGVAQE 142
           ++V+++S+LT++EAAEL  +L +K G+              +AA    +AA   AG A  
Sbjct: 6   KIVEDLSTLTVLEAAELAKLLEEKWGV--------------SAAAAVAVAAGPAAGAAAA 65

Query: 143 EKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVPKEEAE 202
              EE+T F + L +F    KI+VIKE+RAVT  GLKEAKDLVE  P   K+GV KEEAE
Sbjct: 66  APAEEQTEFTVVLAAF-GDKKIEVIKEVRAVTGLGLKEAKDLVEAAPKPVKEGVTKEEAE 123

Query: 203 QIIEKMKAVGAKV 216
           +I   ++  GAKV
Sbjct: 126 KIKAALEKAGAKV 123
[Close]
BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 212.2 bits (539), Expect = 3.100e-55
Identity = 127/221 (57.47%), Postives = 160/221 (72.40%), Query Frame = 1 

		  

Query: 1   MSLFLKLRQHFPTGFLPKPYISSLISSKPLNSTWVYRTYAQPALQEQEFEEVEFDPRKLP 60
           MSL L+ RQH           SS +S   L+    YR+Y QPA  E E EE EFD RKLP
Sbjct: 1   MSLVLRFRQHLSQ-------TSSRLSL--LSRIGGYRSYTQPAKIEDE-EEEEFDQRKLP 60

Query: 61  ADYDPSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVL 120
            DYDP+ FDPT HRSPP+DRVFRLVDE+SSLTL+E +ELG+++MKK GM   E+P + V+
Sbjct: 61  TDYDPATFDPTEHRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGM--TELPTVAVM 120

Query: 121 NPGAAAGLAQMAAN---SPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYG 180
            PGA  G+         S +GV+ EE K EKTVFE+KLESFEA++KIK+IKE+R+ T+ G
Sbjct: 121 KPGAGGGVGVGGGGGMVSQSGVS-EEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLG 180

Query: 181 LKEAKDLVEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           LKEAK LVEKTP+I K G+ KEE E+I+EK+KA+GAKV++E
Sbjct: 181 LKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208
[Close]
BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Match: AT4G36420.1 (Ribosomal protein L12 family protein)

HSP 1 Score: 128.3 bits (321), Expect = 6.000e-30
Identity = 75/149 (50.34%), Postives = 108/149 (72.48%), Query Frame = 1 

		  

Query: 72  SHRSPP--SDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLA 131
           S+ SP   S+ V ++V+E+S+LTL+E  +L  +L +K+ +   E+P++  + PG +    
Sbjct: 34  SYSSPATQSENVSKIVNELSNLTLLETMDLTEILRQKLNI--SELPVMAAMMPGMSLP-G 93

Query: 132 QMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTP 191
             A+ S  G  +E+KKE KT F++ L++++A SKIKVIKE+R +T  GLKEAKDLVEK P
Sbjct: 94  SGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAP 153

Query: 192 SIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           ++ KKGV KEEAE+IIEK+KAVGAKV ME
Sbjct: 154 TLLKKGVSKEEAEKIIEKLKAVGAKVAME 179
[Close]
BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Match: AT3G06040.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.100e-23
Identity = 63/154 (40.91%), Postives = 94/154 (61.04%), Query Frame = 1 

		  

Query: 65  PSKFDPTSHRSPPSDRVFRLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGA 124
           PS +DP   R  PS ++  L + +++L+  E  ++G  L + + + + ++    + + G 
Sbjct: 44  PSVYDPYGPRPQPSSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQM----ISSDG- 103

Query: 125 AAGLAQMAANSPAGVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDL 184
                 + A    G    E+K+EKT F++KLE F A+ KIKVIKE+R  T  GLKEAK+L
Sbjct: 104 ------IGAKQDTGAGNVEEKKEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKEL 163

Query: 185 VEKTPSIFKKGVPKEEAEQIIEKMKAVGAKVIME 219
           VEK P+I K+GV KEEA +II K+KAVG   +ME
Sbjct: 164 VEKVPAILKQGVTKEEANEIIAKIKAVGGIAVME 186
[Close]
BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.500e-20
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 1 

		  

Query: 83  RLVDEVSSLTLVEAAELGTVLMKKMGMKEDEVPIIGVLNPGAAAGLAQMAANSPAGVAQE 142
           R+ D++  L  +E  +   +   K+G+                + +A   +   A  + E
Sbjct: 44  RIADDLLKLNRIELYDYSLLFSHKIGLNR------------YGSAVAVTGSVGDASASTE 103

Query: 143 EKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVPKEEAE 202
            K  EKT F++KLE FEAASKIKVIKEIRA T+ GLKEAK LVEK P I K G+ KEEAE
Sbjct: 104 TKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAE 163

Query: 203 QIIEKMKAVGAKVIME 219
           +I+EK+KAVGA V +E
Sbjct: 164 KIMEKLKAVGAIVALE 167
[Close]
BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Match: AT2G03130.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 84.7 bits (208), Expect = 7.500e-17
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1 

		  

Query: 138 GVAQEEKKEEKTVFELKLESFEAASKIKVIKEIRAVTEYGLKEAKDLVEKTPSIFKKGVP 197
           G A E  K EKTVFE+KLESFEA +KIK+IKE+R +   GLKEA  LV K P++ K G+ 
Sbjct: 11  GGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLS 70

Query: 198 KEEAEQIIEKMKAVGAKVIME 219
           KEE E+++EK+ A+GA+ +++
Sbjct: 71  KEEGEEVVEKLNALGAEAVLQ 91
The following BLAST results are available for this feature:
BLAST of Spo03883.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902238578|gb|KNA25232.1|1.0e-111100.hypothetical protein SOVF_0083... [more]
gi|731366864|ref|XP_010695302.1|1.1e-8680.2PREDICTED: 50S ribosomal prote... [more]
gi|703123768|ref|XP_010102896.1|9.2e-6562.150S ribosomal protein [Morus n... [more]
gi|645238871|ref|XP_008225880.1|5.9e-6464.8PREDICTED: 54S ribosomal prote... [more]
gi|595873779|ref|XP_007212043.1|1.0e-6364.3hypothetical protein PRUPE_ppa... [more]
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BLAST of Spo03883.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9S283_SPIOL7.0e-112100.Uncharacterized protein OS=Spi... [more]
A0A0J8B8W0_BETVU7.7e-8780.2Uncharacterized protein OS=Bet... [more]
W9S8M4_9ROSA6.4e-6562.150S ribosomal protein OS=Morus... [more]
M5WHF2_PRUPE7.1e-6464.3Uncharacterized protein OS=Pru... [more]
A0A118JVV5_CYNCS1.2e-6362.8Ribosomal protein L7/L12, chlo... [more]
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BLAST of Spo03883.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RL7_LIBAF1.1e-1745.550S ribosomal protein L7/L12 O... [more]
MNP1_SCHPO9.3e-1740.254S ribosomal protein L12, mit... [more]
MNP1_YEAST7.9e-1630.854S ribosomal protein L12, mit... [more]
RL7_PROMT7.9e-1640.450S ribosomal protein L7/L12 O... [more]
RL7_METSB1.3e-1544.350S ribosomal protein L7/L12 O... [more]
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BLAST of Spo03883.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G70190.13.1e-5557.4Ribosomal protein L7/L12, olig... [more]
AT4G36420.16.0e-3050.3Ribosomal protein L12 family p... [more]
AT3G06040.11.1e-2340.9Ribosomal protein L12/ ATP-dep... [more]
AT4G37660.11.5e-2045.5Ribosomal protein L12/ ATP-dep... [more]
AT2G03130.17.5e-1754.3Ribosomal protein L12/ ATP-dep... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000206Ribosomal protein L7/L12HAMAPMF_00368Ribosomal_L7_L12coord: 78..218
score: 17
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 155..215
score: 4.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 151..216
score: 7.2
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3D3.30.1390.10coord: 145..217
score: 4.2
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 146..217
score: 2.09
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 48..218
score: 2.5
NoneNo IPR availablePANTHERPTHR24089:SF38750S RIBOSOMAL PROTEIN L7/L12-RELATEDcoord: 48..218
score: 2.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0008152 metabolic process
biological_process GO:0009791 post-embryonic development
biological_process GO:0006996 organelle organization
biological_process GO:0032259 methylation
biological_process GO:0006464 cellular protein modification process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0006412 translation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009658 chloroplast organization
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005622 intracellular
cellular_component GO:0005768 endosome
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004314 [acyl-carrier-protein] S-malonyltransferase activity
RNA-Seq Expression