Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACTAAAATCCATGATCACACAATGACATATCACGATCCCATAAGATTGAATATCAACCATATTTCTCTTTAGCAATCCAAAATTACAAGACAAATACAATGCTCCTCCGGTCTGGAATTGTATTCACACCTCTTACATCACCCTCTCTCTGCCTATCCAAAACTCCCCCTCAAAGACTAACACTCCCCATTATTACTTCATCCTACTCCGTTTCCGACGTCGTCCTCGAGTCCAAAGGCTTCACTCTCCACCGCAACACCACCGACGGCCTCAACCTCGACCACCTCAACTCAGTCTTCGTAGCTGTCGGTTTCCCGAGGCGGGATCCCGATAAGATACGAGTGGCCCTCGAGCATACAGACTCGCTTATATGGGTTCAGTATAATAAGACACAAAGGCCAGTGGCTTTTGCTAGAGCAACAGGGGATGGTGTGTTCAATGCTATCATATGGGACGTAGTTGTTGATCCTATTTATCAAGGGGTTGGGTTAGGGAAAGCTGTCATGGAGAGGATACTGGATGAGTTGTTACAGAAAGGGATTACCAACATTGCGCTCTATTCCGAGCCTCGAGTTCTTGGGTTTTATAGGCCGTTGGGGTTCATCTCCGATCCTGATGGGATTAGAGGTATGGTCTACTCTAGGAAACAGAACAAGAACAAGAAGAAATTTTGATCTTGTTTTGTTATTATCAACATGAATACTGTTGTAACTAATTTTTTAAAATTTATTTTATTACATCGAACATTTATTCTAAAAATAGTTGTATCAATCAGGACTCAGGAGAATGAACAACTGAAAAACCAGTAACTAGTAACTAGTAACGCGCTCGCGCACAACTAGTTTACTGATAAGCCAAGAAAAACAGAACTATGATAGCAAAAACACCGCATTCTCGAGTAATTGAGAGCTCAGAAACGGGTTATATAGTCCGTCTATTGAGTAATTGAGTAATATGACACTGATCAATTTGCAACAATCAATTCTCAAAATACATCTTAGACCAATATATGCACTGGTGCTGTCAAATTGAACAGCCTGAAGGCTGCAACATAAAACCCTTGATTCCATTAAGTATAATGTTAGCATCGTTCAGAGTACACAAATTTGTATATGAAAAAAGATGCAGTGACCAATACTGCGAAAGGGGGGAGGAACCCAGTTTTAAGCAAATCATGCATGGAGTTTCTTACAGCTTACACAGAATTTTCCATTGTACTCGAAATGCAGCCTTCGTTTCAACAGAAATCGAAGAGTGAACCACATCCCCTTACTTTAGCGTACATCATTCAGTGTGGATTCTAGCTCCAGCCACCTCTCAATTTCTGCAGCAGCATTCTTGGCTTCAAATAGACAGATTCGAAAACCTGGCTGAAAAGTGAAAACAAGGTACATTTAAACAGATTAAATTGTTCGTATATCACACCCTTAAGGCCTTCATCAAGTGCAATCCATGCTTAAGCATTCATCCTAATGTGATAGAGATTAAAAGTATTAATAATCTGAACTAGAAATAACCATAGTCAAAGTTGCATCTTACAGACTGTAAATAAGGCGTTGGTAAATTTTTTATTTAGAGACAGAGAAAGTTATAATCTTTGAACTGTTTTTTTGGGTGTTTCGGCCCTTTGACCATCGCGCCTCTGTTAAGGCCTTCGTATTAAGTCAAAATGTGCCTTCTACATATATTTAAACCAGTGATATTGCCAACTAATCCCAGCATTGCTTACTAACTTATATGTCAACTAGTTTTGATAACTTTTGAACACAAATTGTCAAACAAGTTCAACTTGGTTTTACAAGCCGCCTCAATATATATAAACAAAAGCAAATGGATGATTATAATGTTATAATATATATAAAGTATTAACAAGTATTTCTGGATATAAATGTATGCTTTCCCAAGCTTAAACAAGGACATCTACCTCATTCCAGTTTCTTTTGCTCCTCCACCAGTTTTCCACTTCATATTTTTTTTTTGCTGTTGGCTAACTTGCCTTATTACCTTTGAGTTTTCGTTAGTTTGTTCATAACCATACTCAGAAAGCCCTA CCACTAAAATCCATGATCACACAATGACATATCACGATCCCATAAGATTGAATATCAACCATATTTCTCTTTAGCAATCCAAAATTACAAGACAAATACAATGCTCCTCCGGTCTGGAATTGTATTCACACCTCTTACATCACCCTCTCTCTGCCTATCCAAAACTCCCCCTCAAAGACTAACACTCCCCATTATTACTTCATCCTACTCCGTTTCCGACGTCGTCCTCGAGTCCAAAGGCTTCACTCTCCACCGCAACACCACCGACGGCCTCAACCTCGACCACCTCAACTCAGTCTTCGTAGCTGTCGGTTTCCCGAGGCGGGATCCCGATAAGATACGAGTGGCCCTCGAGCATACAGACTCGCTTATATGGGTTCAGTATAATAAGACACAAAGGCCAGTGGCTTTTGCTAGAGCAACAGGGGATGGTGTGTTCAATGCTATCATATGGGACGTAGTTGTTGATCCTATTTATCAAGGGGTTGGGTTAGGGAAAGCTGTCATGGAGAGGATACTGGATGAGTTGTTACAGAAAGGGATTACCAACATTGCGCTCTATTCCGAGCCTCGAGTTCTTGGGTTTTATAGGCCGTTGGGGTTCATCTCCGATCCTGATGGGATTAGAGCCTTCGTTTCAACAGAAATCGAAGAGTGAACCACATCCCCTTACTTTAGCGTACATCATTCAGTGTGGATTCTAGCTCCAGCCACCTCTCAATTTCTGCAGCAGCATTCTTGGCTTCAAATAGACAGATTCGAAAACCTGGCTGAAAAGTGAAAACAAGGTACATTTAAACAGATTAAATTGTTCGTATATCACACCCTTAAGGCCTTCATCAAGTGCAATCCATGCTTAAGCATTCATCCTAATGTGATAGAGATTAAAAGTATTAATAATCTGAACTAGAAATAACCATAGTCAAAGTTGCATCTTACAGACTGTAAATAAGGCGTTGGTAAATTTTTTATTTAGAGACAGAGAAAGTTATAATCTTTGAACTGTTTTTTTGGGTGTTTCGGCCCTTTGACCATCGCGCCTCTGTTAAGGCCTTCGTATTAAGTCAAAATGTGCCTTCTACATATATTTAAACCAGTGATATTGCCAACTAATCCCAGCATTGCTTACTAACTTATATGTCAACTAGTTTTGATAACTTTTGAACACAAATTGTCAAACAAGTTCAACTTGGTTTTACAAGCCGCCTCAATATATATAAACAAAAGCAAATGGATGATTATAATGTTATAATATATATAAAGTATTAACAAGTATTTCTGGATATAAATGTATGCTTTCCCAAGCTTAAACAAGGACATCTACCTCATTCCAGTTTCTTTTGCTCCTCCACCAGTTTTCCACTTCATATTTTTTTTTTGCTGTTGGCTAACTTGCCTTATTACCTTTGAGTTTTCGTTAGTTTGTTCATAACCATACTCAGAAAGCCCTA ATGCTCCTCCGGTCTGGAATTGTATTCACACCTCTTACATCACCCTCTCTCTGCCTATCCAAAACTCCCCCTCAAAGACTAACACTCCCCATTATTACTTCATCCTACTCCGTTTCCGACGTCGTCCTCGAGTCCAAAGGCTTCACTCTCCACCGCAACACCACCGACGGCCTCAACCTCGACCACCTCAACTCAGTCTTCGTAGCTGTCGGTTTCCCGAGGCGGGATCCCGATAAGATACGAGTGGCCCTCGAGCATACAGACTCGCTTATATGGGTTCAGTATAATAAGACACAAAGGCCAGTGGCTTTTGCTAGAGCAACAGGGGATGGTGTGTTCAATGCTATCATATGGGACGTAGTTGTTGATCCTATTTATCAAGGGGTTGGGTTAGGGAAAGCTGTCATGGAGAGGATACTGGATGAGTTGTTACAGAAAGGGATTACCAACATTGCGCTCTATTCCGAGCCTCGAGTTCTTGGGTTTTATAGGCCGTTGGGGTTCATCTCCGATCCTGATGGGATTAGAGCCTTCGTTTCAACAGAAATCGAAGAGTGA MLLRSGIVFTPLTSPSLCLSKTPPQRLTLPIITSSYSVSDVVLESKGFTLHRNTTDGLNLDHLNSVFVAVGFPRRDPDKIRVALEHTDSLIWVQYNKTQRPVAFARATGDGVFNAIIWDVVVDPIYQGVGLGKAVMERILDELLQKGITNIALYSEPRVLGFYRPLGFISDPDGIRAFVSTEIEE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03879.1 vs. NCBI nr
Match: gi|902192987|gb|KNA12174.1| (hypothetical protein SOVF_128480 [Spinacia oleracea]) HSP 1 Score: 358.2 bits (918), Expect = 8.500e-96 Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 1
BLAST of Spo03879.1 vs. NCBI nr
Match: gi|731340272|ref|XP_010681307.1| (PREDICTED: uncharacterized N-acetyltransferase ycf52 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 271.9 bits (694), Expect = 8.000e-70 Identity = 138/185 (74.59%), Postives = 157/185 (84.86%), Query Frame = 1
BLAST of Spo03879.1 vs. NCBI nr
Match: gi|747042313|ref|XP_011077765.1| (PREDICTED: uncharacterized N-acetyltransferase ycf52 [Sesamum indicum]) HSP 1 Score: 252.3 bits (643), Expect = 6.600e-64 Identity = 122/167 (73.05%), Postives = 139/167 (83.23%), Query Frame = 1
BLAST of Spo03879.1 vs. NCBI nr
Match: gi|976904786|gb|KVH92443.1| (Acyl-CoA N-acyltransferase [Cynara cardunculus var. scolymus]) HSP 1 Score: 251.1 bits (640), Expect = 1.500e-63 Identity = 125/181 (69.06%), Postives = 145/181 (80.11%), Query Frame = 1
BLAST of Spo03879.1 vs. NCBI nr
Match: gi|449434698|ref|XP_004135133.1| (PREDICTED: uncharacterized N-acetyltransferase ycf52 [Cucumis sativus]) HSP 1 Score: 251.1 bits (640), Expect = 1.500e-63 Identity = 118/146 (80.82%), Postives = 135/146 (92.47%), Query Frame = 1
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QY26_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_128480 PE=4 SV=1) HSP 1 Score: 358.2 bits (918), Expect = 5.900e-96 Identity = 177/179 (98.88%), Postives = 177/179 (98.88%), Query Frame = 1
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EYP7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140340 PE=4 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 5.600e-70 Identity = 138/185 (74.59%), Postives = 157/185 (84.86%), Query Frame = 1
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Match: A0A103XKN0_CYNCS (Acyl-CoA N-acyltransferase OS=Cynara cardunculus var. scolymus GN=Ccrd_005492 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.000e-63 Identity = 125/181 (69.06%), Postives = 145/181 (80.11%), Query Frame = 1
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KR11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G608010 PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.000e-63 Identity = 118/146 (80.82%), Postives = 135/146 (92.47%), Query Frame = 1
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H135_SOLCH (Putative acyl-CoA N-acyltransferases superfamily protein-like (Fragment) OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 2.300e-63 Identity = 117/155 (75.48%), Postives = 138/155 (89.03%), Query Frame = 1
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Match: YCF52_PORPU (Uncharacterized N-acetyltransferase ycf52 OS=Porphyra purpurea GN=ycf52 PE=3 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 1.900e-26 Identity = 58/129 (44.96%), Postives = 87/129 (67.44%), Query Frame = 1
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Match: YCF52_PYRYE (Uncharacterized N-acetyltransferase ycf52 OS=Pyropia yezoensis GN=ycf52 PE=3 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 3.900e-24 Identity = 52/129 (40.31%), Postives = 85/129 (65.89%), Query Frame = 1
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Match: YCF52_GRATL (Uncharacterized N-acetyltransferase ycf52 OS=Gracilaria tenuistipitata var. liui GN=ycf52 PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.500e-23 Identity = 54/122 (44.26%), Postives = 83/122 (68.03%), Query Frame = 1
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Match: YC52L_SYNY3 (Uncharacterized N-acetyltransferase ycf52-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0286 PE=3 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.100e-22 Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = 1
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Match: NSI_ORYSI (Probable acetyltransferase NSI OS=Oryza sativa subsp. indica GN=NSI PE=3 SV=2) HSP 1 Score: 105.1 bits (261), Expect = 8.100e-22 Identity = 52/128 (40.62%), Postives = 82/128 (64.06%), Query Frame = 1
BLAST of Spo03879.1 vs. TAIR (Arabidopsis)
Match: AT1G26220.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein) HSP 1 Score: 233.4 bits (594), Expect = 1.100e-61 Identity = 111/145 (76.55%), Postives = 126/145 (86.90%), Query Frame = 1
BLAST of Spo03879.1 vs. TAIR (Arabidopsis)
Match: AT1G32070.2 (nuclear shuttle interacting) HSP 1 Score: 99.0 bits (245), Expect = 3.300e-21 Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03879.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03879.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03879.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03879.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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