Spo03847 (gene) | SpinachBase

Overview


Name	Spo03847
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I reaction center subunit V family protein
Location	chr1 : 3599121 .. 3599624 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAGCAACAGCATCTTTGAGCAGCACTTTACTAGCACCCTGCAGCTCAAAGCAGCCGCAGCCGCAACAGCAACATCAGCATCAGCAGCTCAAATGCAAGTCCTTTGCCGGCCTCCGCCCACTGAAGCTAAACATCAGCAGCAACAACAGCAGCAGCAGTCTATCGATGTCTTCTGCAAGAAGATCAATGACTTGCCGTGCAGAGTTGAGCCCATCATTGGTGATAAGTCTGAGTACAGGGCTATCCCTTTTCTTAGGAAGGTTTGTGTTCTTCAATTTCCAGAGGGAGAATATGGCCAAACAGGTGCCTGAACAAAATGGTATGTCTCATTTTGAGGCGGGCGATACTCGTGCTAAGGAGTATGTGAGCCTTCTTAAGTCTAATGATCCTGTTGGGTTTAACATTGTTGATGTTCTTGCTTGGGGTTCTATTGGTCATATTGTTGCTTATTATATCTTGGCTACTGCTAGCAATGGTTATGACCCTAGCTTCTTTTAA

mRNA sequence

ATGGCAGCAGCAACAGCATCTTTGAGCAGCACTTTACTAGCACCCTGCAGCTCAAAGCAGCCGCAGCCGCAACAGCAACATCAGCATCAGCAGCTCAAATGCAAGTCCTTTGCCGGCCTCCGCCCACTGAAGCTAAACATCAGCAGCAACAACAGCAGCAGCAGTCTATCGATGTCTTCTGCAAGAAGATCAATGACTTGCCGTGCAGAGTTGAGCCCATCATTGGTGATAAGTCTGAGTACAGGGCTATCCCTTTTCTTAGGAAGGTTTGTGTTCTTCAATTTCCAGAGGGAGAATATGGCCAAACAGGTGCCTGAACAAAATGGTATGTCTCATTTTGAGGCGGGCGATACTCGTGCTAAGGAGTATGTGAGCCTTCTTAAGTCTAATGATCCTGTTGGGTTTAACATTGTTGATGTTCTTGCTTGGGGTTCTATTGGTCATATTGTTGCTTATTATATCTTGGCTACTGCTAGCAATGGTTATGACCCTAGCTTCTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCAACAGCATCTTTGAGCAGCACTTTACTAGCACCCTGCAGCTCAAAGCAGCCGCAGCCGCAACAGCAACATCAGCATCAGCAGCTCAAATGCAAGTCCTTTGCCGGCCTCCGCCCACTGAAGCTAAACATCAGCAGCAACAACAGCAGCAGCAGTCTATCGATGTCTTCTGCAAGAAGATCAATGACTTGCCGTGCAGAGTTGAGCCCATCATTGGTGATAAGTCTGAGTACAGGGCTATCCCTTTTCTTAGGAAGGTTTGTGTTCTTCAATTTCCAGAGGGAGAATATGGCCAAACAGGTGCCTGAACAAAATGGTATGTCTCATTTTGAGGCGGGCGATACTCGTGCTAAGGAGTATGTGAGCCTTCTTAAGTCTAATGATCCTGTTGGGTTTAACATTGTTGATGTTCTTGCTTGGGGTTCTATTGGTCATATTGTTGCTTATTATATCTTGGCTACTGCTAGCAATGGTTATGACCCTAGCTTCTTTTAA

Protein sequence

MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo03847.1	Spo03847.1	mRNA

Homology

[Close]

BLAST of Spo03847.1 vs. NCBI nr
Match: gi|131194|sp|P12357.1|PSAG_SPIOL (RecName: Full=Photosystem I reaction center subunit V, chloroplastic; AltName: Full=PSI-G; AltName: Full=Photosystem I 9 kDa protein; Flags: Precursor)

HSP 1 Score: 317.8 bits (813), Expect = 1.200e-83
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1


		  
Query: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSS 60
           MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSF+GLRPLKLNISSNNSSSSLSMSS
Sbjct: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSS 60

Query: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120
           ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA
Sbjct: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120

Query: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF
Sbjct: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167

[Close]

BLAST of Spo03847.1 vs. NCBI nr
Match: gi|731325195|ref|XP_010673384.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 243.8 bits (621), Expect = 2.100e-61
Identity = 135/168 (80.36%), Postives = 145/168 (86.31%), Query Frame = 1


		  
Query: 1   MAAATASLSST-LLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMS 60
           M+A TA LSS+ LLA CSSKQ    Q + H Q+K  SF+GLRPLKLN+   NS    S S
Sbjct: 1   MSATTAGLSSSSLLAACSSKQ----QHNVHVQVKSISFSGLRPLKLNMLKTNSK--FSTS 60

Query: 61  SARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTR 120
            +RRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNG++HFEAGD+R
Sbjct: 61  ESRRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGLTHFEAGDSR 120

Query: 121 AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP FF
Sbjct: 121 AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPKFF 162

[Close]

BLAST of Spo03847.1 vs. NCBI nr
Match: gi|922500505|ref|XP_013587999.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Brassica oleracea var. oleracea])

HSP 1 Score: 208.4 bits (529), Expect = 9.800e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. NCBI nr
Match: gi|685308053|ref|XP_009144738.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Brassica rapa])

HSP 1 Score: 208.4 bits (529), Expect = 9.800e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. NCBI nr
Match: gi|923845562|ref|XP_013702261.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Brassica napus])

HSP 1 Score: 208.4 bits (529), Expect = 9.800e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHQ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071290 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.000e-84
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1


		  
Query: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSS 60
           MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSF+GLRPLKLNISSNNSSSSLSMSS
Sbjct: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSS 60

Query: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120
           ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA
Sbjct: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120

Query: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF
Sbjct: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167

[Close]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS02_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g065490 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.500e-61
Identity = 135/168 (80.36%), Postives = 145/168 (86.31%), Query Frame = 1


		  
Query: 1   MAAATASLSST-LLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMS 60
           M+A TA LSS+ LLA CSSKQ    Q + H Q+K  SF+GLRPLKLN+   NS    S S
Sbjct: 1   MSATTAGLSSSSLLAACSSKQ----QHNVHVQVKSISFSGLRPLKLNMLKTNSK--FSTS 60

Query: 61  SARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTR 120
            +RRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNG++HFEAGD+R
Sbjct: 61  ESRRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGLTHFEAGDSR 120

Query: 121 AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP FF
Sbjct: 121 AKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPKFF 162

[Close]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Match: M4F7P3_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.900e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Match: A0A0D3CSF6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.900e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Match: A0A078GLQ5_BRANA (BnaC06g11040D protein OS=Brassica napus GN=BnaC06g11040D PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 6.900e-51
Identity = 109/134 (81.34%), Postives = 120/134 (89.55%), Query Frame = 1


		  
Query: 36  SFAGLRPLKLNISSNNSSSSLSMSSARRSMTC--RAELSPSLVISLSTGLSLFLGRFVFF 95
           SF GLRPL+L  SS++S   LS ++ RRS +   RAELSPS+VISLSTGLSLFLGRFVFF
Sbjct: 27  SFHGLRPLRLGGSSSSSLPKLSTTAGRRSSSAVVRAELSPSVVISLSTGLSLFLGRFVFF 86

Query: 96  NFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 155
           NFQREN+AKQVPEQNG +HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY
Sbjct: 87  NFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYY 146

Query: 156 ILATASNGYDPSFF 168
           +LAT+SNGYDPSFF
Sbjct: 147 VLATSSNGYDPSFF 160

[Close]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 7.200e-86
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 1


		  
Query: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSS 60
           MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSF+GLRPLKLNISSNNSSSSLSMSS
Sbjct: 1   MAAATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSS 60

Query: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120
           ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA
Sbjct: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120

Query: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF
Sbjct: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167

[Close]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.800e-48
Identity = 109/163 (66.87%), Postives = 123/163 (75.46%), Query Frame = 1


		  
Query: 6   ASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSSARRSM 65
           A+ +S LL+P +           H+     SF GLRPL+L  SS+      +      S 
Sbjct: 2   ATSASALLSPTTFSTAI-----SHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSA 61

Query: 66  TCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYV 125
             RAELSPS+VISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG +HFEAGD RAKEYV
Sbjct: 62  VVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYV 121

Query: 126 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           SLLKSNDP+GFNIVDVLAWGSIGHIVAYYILAT+SNGYDPSFF
Sbjct: 122 SLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 159

[Close]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.200e-45
Identity = 88/107 (82.24%), Postives = 96/107 (89.72%), Query Frame = 1


		  
Query: 61  ARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRA 120
           ARRS+  RA L PS+VISLSTGLSL +GRFVFFNFQREN+AKQVPEQNG +HFEAGD RA
Sbjct: 36  ARRSVAARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQVPEQNGKTHFEAGDERA 95

Query: 121 KEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           KE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT SNGYDP FF
Sbjct: 96  KEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFF 142

[Close]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-17
Identity = 48/108 (44.44%), Postives = 71/108 (65.74%), Query Frame = 1


		  
Query: 57  SMSSARRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEA 116
           +++ +   +TC    + S +IS ST   L LGRFVF  FQR  +++  +PEQNG+     
Sbjct: 3   AIAKSAAKVTCDGA-NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRR 62

Query: 117 GDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYD 164
                + + S+LK+NDP GF +VDVLAWG++GH V ++ILATA+NGY+
Sbjct: 63  VTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109

[Close]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.900e-11
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 1


		  
Query: 62  RRSMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRE--NMAKQV-PEQNGMSHFEAGDT 121
           R ++  +A L P +VIS ST   L +GRFVF  +QR   N    V P+  G ++F+    
Sbjct: 23  RVAVVTKAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFDD--- 82

Query: 122 RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATAS 160
             ++  ++  +NDP GFNI+DV  WG++GH V + +LA  S
Sbjct: 83  -LQKNSTIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119

[Close]

BLAST of Spo03847.1 vs. TAIR (Arabidopsis)
Match: AT1G55670.1 (photosystem I subunit G)

HSP 1 Score: 191.4 bits (485), Expect = 4.400e-49
Identity = 109/163 (66.87%), Postives = 123/163 (75.46%), Query Frame = 1


		  
Query: 6   ASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFAGLRPLKLNISSNNSSSSLSMSSARRSM 65
           A+ +S LL+P +           H+     SF GLRPL+L  SS+      +      S 
Sbjct: 2   ATSASALLSPTTFSTAI-----SHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSA 61

Query: 66  TCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYV 125
             RAELSPS+VISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG +HFEAGD RAKEYV
Sbjct: 62  VVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYV 121

Query: 126 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 168
           SLLKSNDP+GFNIVDVLAWGSIGHIVAYYILAT+SNGYDPSFF
Sbjct: 122 SLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 159

The following BLAST results are available for this feature:

BLAST of Spo03847.1 vs. NCBI nr
BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
BLAST of Spo03847.1 vs. TAIR (Arabidopsis)

BLAST of Spo03847.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|131194\|sp\|P12357.1\|PSAG_SPIOL	1.2e-83	99.4	RecName: Full=Photosystem I re...	[more]
gi\|731325195\|ref\|XP_010673384.1\|	2.1e-61	80.3	PREDICTED: photosystem I react...	[more]
gi\|922500505\|ref\|XP_013587999.1\|	9.8e-51	81.3	PREDICTED: photosystem I react...	[more]
gi\|685308053\|ref\|XP_009144738.1\|	9.8e-51	81.3	PREDICTED: photosystem I react...	[more]
gi\|923845562\|ref\|XP_013702261.1\|	9.8e-51	81.3	PREDICTED: photosystem I react...	[more]

BLAST of Spo03847.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RHQ2_SPIOL	8.0e-84	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CS02_BETVU	1.5e-61	80.3	Uncharacterized protein OS=Bet...	[more]
M4F7P3_BRARP	6.9e-51	81.3	Uncharacterized protein OS=Bra...	[more]
A0A0D3CSF6_BRAOL	6.9e-51	81.3	Uncharacterized protein OS=Bra...	[more]
A0A078GLQ5_BRANA	6.9e-51	81.3	BnaC06g11040D protein OS=Brass...	[more]

BLAST of Spo03847.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSAG_SPIOL	7.2e-86	99.4	Photosystem I reaction center ...	[more]
PSAG_ARATH	7.8e-48	66.8	Photosystem I reaction center ...	[more]
PSAG_HORVU	6.2e-45	82.2	Photosystem I reaction center ...	[more]
PSAG_TORRU	1.1e-17	44.4	Photosystem I reaction center ...	[more]
PSAG_CHLRE	9.9e-11	38.6	Photosystem I reaction center ...	[more]

BLAST of Spo03847.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G55670.1	4.4e-49	66.8	photosystem I subunit G	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 72..162 score: 4.7
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 134..151 scor
IPR016370	Photosystem I PsaG/PsaK, plant	PIR	PIRSF002912	PsaK	coord: 1..167 score: 4.7
IPR017494	Photosystem I PsaG, plant	TIGRFAMs	TIGR03051	TIGR03051	coord: 76..163 score: 1.4
IPR023618	Photosystem I PsaG/PsaK domain	GENE3D	1.10.286.40		coord: 74..166 score: 3.3
None	No IPR available	PANTHER	PTHR34195	FAMILY NOT NAMED	coord: 25..167 score: 3.7
None	No IPR available	PANTHER	PTHR34195:SF1	SUBFAMILY NOT NAMED	coord: 25..167 score: 3.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0016573	histone acetylation
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0009657	plastid organization
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0006796	phosphate-containing compound metabolic process
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044085	cellular component biogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0015979	photosynthesis
biological_process	GO:0070838	divalent metal ion transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0050821	protein stabilization
biological_process	GO:0009780	photosynthetic NADP+ reduction
cellular_component	GO:0005778	peroxisomal membrane
cellular_component	GO:0000123	histone acetyltransferase complex
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0004402	histone acetyltransferase activity
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo23141	0.82	Barchart \| Table
Spo11056	0.75	Barchart \| Table
Spo01715	0.75	Barchart \| Table
Spo15340	0.75	Barchart \| Table
Spo21430	0.72	Barchart \| Table
Spo05480	0.72	Barchart \| Table
Spo15619	0.72	Barchart \| Table
Spo01224	0.71	Barchart \| Table
Spo27285	0.69	Barchart \| Table
Spo10146	0.68	Barchart \| Table
Spo18201	0.68	Barchart \| Table
Spo01066	0.68	Barchart \| Table
Spo26994	0.67	Barchart \| Table
Spo15902	0.67	Barchart \| Table
Spo16925	0.67	Barchart \| Table
Spo01116	0.67	Barchart \| Table
Spo05935	0.66	Barchart \| Table
Spo11304	0.66	Barchart \| Table
Spo06714	0.66	Barchart \| Table
Spo24867	0.66	Barchart \| Table
Spo02381	0.65	Barchart \| Table
Spo17761	0.65	Barchart \| Table