Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTTCTTATTCAAAGAAGACCCAAAATATCTTTGGTTTCCTTTAATAAAAAAATTTCCAAAAGGATAATAGACTGATAACATTGTAGCCACCAAACCCCACTAACTTTAATTTGTGACTAACAAAAAAAACAATTACTTAACTGATTTAGTGTGTATAATGAGTGATTACAAAGGCAGATAGATAGAAGAAAATGGCAGATATGAACACCTCCATTGGAAACACAGAAAGAAAACCTATTCGTTGCAAAGGTAATTTCTTACTCTTATACTGCCTTCACTAGGATTTAGTCTATTCGTTCAGATTACATTATCAACGTGACTATTGAAACGGTGCAGCTGCTGTAGCTAGAAAAGCAGGGCAACCATTGGTGATAGAGGAGGTGATAGTGGCTCCACCAAAAGCTTATGAAGTTCGTATCAAGATCCTTTGCACTTCACTTTGTTATAGCGACATCACCTTCTGGAAATTAAAAGTATGTATGTACACTTGACATTGTTATTTATTTATGAGTAAGTACTTATTGTTGTTAAATCACACCTTATATTTTTTTCATATATTAATTCTCTATTATGTATTTTTTACCAGGATCCTCCCGGATGCTTTCCAAGAATCATGGGCCATGAGGCTGTTGGGTAAATACTTTTAGCTTATTTATTTTTTATAATCTGATGTCATTGTGAAAGAATGTAGGTAAATACTTTTAGCTTATTTACTTTTTTATGAATTATTGATTGAAAGGTAATACTTCTATATAATTGTATTGTGACTTATCAAGTTAGCTTAGCATGGTGATTATTGTAAGTAATTTATCACATGTAGGATCGTAGAGAGTGTAGGAGAAGGAGTGGATGAAATAATGAAAGGAGATTATGTTGTACCAGTTTTCATAGCTGATTGTGGTGAATGTAAGGATTGCAAATCAAGCAAGAGCAACTTGTGTTCGAAGCTTCCATTTAAGGTCTCCCCATGGATGCCAAGGGAAGAGACAAGCAGATTTACTGATTTAAAGGGGGAAACTCTCTTTCACTTCTTGTTCGTTTCAAGCTTTTGCGAATATACTGTTGTCGACATTGCTCATCTCACTAAACTTCACCCTCAAATTCCTCCCAACAGGGCATGCCTTCTCAGTTGTGGGGTTTCCACCGGTATTTTCACTTCCCTTCCACTCTCTTGCATATATTATATATACATTGTCCTACATTTTTCTAACGTTACTAGTTTAACTAGTAAAGTACTAGTCTTATATGCACGCGATGCGTGCGTGGATATAAAACTAAAAGATTTACTATAGCATATATCACCCGAATAATATATGTAATAAAAAAAATGTCTAAGAAATCACACGATCTATCATCTCGAATGTAAAACTTTAAGAGAAAAAGACTGAAATTGATGGTCTAAAGAACTTTATTGAACTTAGAAACATTACAAATTGCAAACATCATAAAACCATTACAAAGCATAAGTAGTTAAGTACTAACAGAGGGTACCATGTATTTGCGATGCGTGCAAGATAATATGGAAACAACATTTCTTCCTCCGGACATTTTTTTTCCCAATCTCTATCTTTTACTTGTTTCCTTATACATAAGGACAATTTTGTTAAACACAAAATCCAAAGGACAAACAGTTTATACACCATTATAAATTTTAAACAAAAAGTTCATTGTTTTTAGGGATTCTTAACACGTATTTCTCACTGAATACAACCCTCCTTTATGTTTAGTTCAAAGGCAGCTGTTAGCATTACTAAAGCATTACTTTTAGTAATACACAGTTTATGAAGAATTGTAA TTTTCTTATTCAAAGAAGACCCAAAATATCTTTGGTTTCCTTTAATAAAAAAATTTCCAAAAGGATAATAGACTGATAACATTGTAGCCACCAAACCCCACTAACTTTAATTTGTGACTAACAAAAAAAACAATTACTTAACTGATTTAGTGTGTATAATGAGTGATTACAAAGGCAGATAGATAGAAGAAAATGGCAGATATGAACACCTCCATTGGAAACACAGAAAGAAAACCTATTCGTTGCAAAGCTGCTGTAGCTAGAAAAGCAGGGCAACCATTGGTGATAGAGGAGGTGATAGTGGCTCCACCAAAAGCTTATGAAGTTCGTATCAAGATCCTTTGCACTTCACTTTGTTATAGCGACATCACCTTCTGGAAATTAAAAGATCCTCCCGGATGCTTTCCAAGAATCATGGGCCATGAGGCTGTTGGGATCGTAGAGAGTGTAGGAGAAGGAGTGGATGAAATAATGAAAGGAGATTATGTTGTACCAGTTTTCATAGCTGATTGTGGTGAATGTAAGGATTGCAAATCAAGCAAGAGCAACTTGTGTTCGAAGCTTCCATTTAAGGTCTCCCCATGGATGCCAAGGGAAGAGACAAGCAGATTTACTGATTTAAAGGGGGAAACTCTCTTTCACTTCTTGTTCGTTTCAAGCTTTTGCGAATATACTGTTGTCGACATTGCTCATCTCACTAAACTTCACCCTCAAATTCCTCCCAACAGGGCATGCCTTCTCAGTTGTGGGGTTTCCACCGTTTATGAAGAATTGTAA ATGGCAGATATGAACACCTCCATTGGAAACACAGAAAGAAAACCTATTCGTTGCAAAGCTGCTGTAGCTAGAAAAGCAGGGCAACCATTGGTGATAGAGGAGGTGATAGTGGCTCCACCAAAAGCTTATGAAGTTCGTATCAAGATCCTTTGCACTTCACTTTGTTATAGCGACATCACCTTCTGGAAATTAAAAGATCCTCCCGGATGCTTTCCAAGAATCATGGGCCATGAGGCTGTTGGGATCGTAGAGAGTGTAGGAGAAGGAGTGGATGAAATAATGAAAGGAGATTATGTTGTACCAGTTTTCATAGCTGATTGTGGTGAATGTAAGGATTGCAAATCAAGCAAGAGCAACTTGTGTTCGAAGCTTCCATTTAAGGTCTCCCCATGGATGCCAAGGGAAGAGACAAGCAGATTTACTGATTTAAAGGGGGAAACTCTCTTTCACTTCTTGTTCGTTTCAAGCTTTTGCGAATATACTGTTGTCGACATTGCTCATCTCACTAAACTTCACCCTCAAATTCCTCCCAACAGGGCATGCCTTCTCAGTTGTGGGGTTTCCACCGTTTATGAAGAATTGTAA MADMNTSIGNTERKPIRCKAAVARKAGQPLVIEEVIVAPPKAYEVRIKILCTSLCYSDITFWKLKDPPGCFPRIMGHEAVGIVESVGEGVDEIMKGDYVVPVFIADCGECKDCKSSKSNLCSKLPFKVSPWMPREETSRFTDLKGETLFHFLFVSSFCEYTVVDIAHLTKLHPQIPPNRACLLSCGVSTVYEEL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03524.1 vs. NCBI nr
Match: gi|902196039|gb|KNA13019.1| (hypothetical protein SOVF_120580 isoform A [Spinacia oleracea]) HSP 1 Score: 397.1 bits (1019), Expect = 1.700e-107 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1
BLAST of Spo03524.1 vs. NCBI nr
Match: gi|902196040|gb|KNA13020.1| (hypothetical protein SOVF_120580 isoform B [Spinacia oleracea]) HSP 1 Score: 387.5 bits (994), Expect = 1.400e-104 Identity = 186/189 (98.41%), Postives = 186/189 (98.41%), Query Frame = 1
BLAST of Spo03524.1 vs. NCBI nr
Match: gi|731372754|ref|XP_010666439.1| (PREDICTED: alcohol dehydrogenase-like 7 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 343.6 bits (880), Expect = 2.300e-91 Identity = 162/189 (85.71%), Postives = 176/189 (93.12%), Query Frame = 1
BLAST of Spo03524.1 vs. NCBI nr
Match: gi|225459818|ref|XP_002285916.1| (PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera]) HSP 1 Score: 310.5 bits (794), Expect = 2.100e-81 Identity = 141/181 (77.90%), Postives = 160/181 (88.40%), Query Frame = 1
BLAST of Spo03524.1 vs. NCBI nr
Match: gi|702368297|ref|XP_010061139.1| (PREDICTED: alcohol dehydrogenase-like 7 [Eucalyptus grandis]) HSP 1 Score: 309.7 bits (792), Expect = 3.600e-81 Identity = 140/179 (78.21%), Postives = 158/179 (88.27%), Query Frame = 1
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R255_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_120580 PE=3 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.200e-107 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0H6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_120580 PE=3 SV=1) HSP 1 Score: 387.5 bits (994), Expect = 9.600e-105 Identity = 186/189 (98.41%), Postives = 186/189 (98.41%), Query Frame = 1
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B552_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_002030 PE=3 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 1.600e-91 Identity = 162/189 (85.71%), Postives = 176/189 (93.12%), Query Frame = 1
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Match: F6H0C5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g00380 PE=3 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 1.500e-81 Identity = 141/181 (77.90%), Postives = 160/181 (88.40%), Query Frame = 1
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Match: A0A059BPC8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01715 PE=3 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 2.500e-81 Identity = 140/179 (78.21%), Postives = 158/179 (88.27%), Query Frame = 1
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 1.600e-76 Identity = 131/191 (68.59%), Postives = 164/191 (85.86%), Query Frame = 1
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 1.900e-58 Identity = 114/186 (61.29%), Postives = 136/186 (73.12%), Query Frame = 1
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 4.300e-58 Identity = 114/181 (62.98%), Postives = 136/181 (75.14%), Query Frame = 1
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 5.300e-56 Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 1
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 2.200e-49 Identity = 98/180 (54.44%), Postives = 129/180 (71.67%), Query Frame = 1
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Match: AT5G42250.1 (Zinc-binding alcohol dehydrogenase family protein) HSP 1 Score: 287.0 bits (733), Expect = 8.900e-78 Identity = 131/191 (68.59%), Postives = 164/191 (85.86%), Query Frame = 1
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Match: AT1G22430.1 (GroES-like zinc-binding dehydrogenase family protein) HSP 1 Score: 226.9 bits (577), Expect = 1.100e-59 Identity = 114/186 (61.29%), Postives = 136/186 (73.12%), Query Frame = 1
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Match: AT1G22440.1 (Zinc-binding alcohol dehydrogenase family protein) HSP 1 Score: 225.7 bits (574), Expect = 2.400e-59 Identity = 114/181 (62.98%), Postives = 136/181 (75.14%), Query Frame = 1
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Match: AT4G22110.1 (GroES-like zinc-binding dehydrogenase family protein) HSP 1 Score: 218.8 bits (556), Expect = 3.000e-57 Identity = 110/180 (61.11%), Postives = 136/180 (75.56%), Query Frame = 1
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Match: AT1G77120.1 (alcohol dehydrogenase 1) HSP 1 Score: 192.6 bits (488), Expect = 2.300e-49 Identity = 94/181 (51.93%), Postives = 128/181 (70.72%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03524.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03524.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03524.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03524.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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