Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCCTAAACCTTGAACTTTTTCAACTAGAGTGCATCGGGTTAAGAATGGTGAGAAACGATCCTCTTGGTACCTCAAACCCACTAAAAAAGGTGATTGTGGTAATGAGACTTTACAGGTAATTAGAAGCTTAACAAATGGAGGAACAATGTGAAAATTATATTTGAATGAAAAGACTATATTTTGTGAAAGGAAGTTCAGACTTATTTGAGCATTATAAGATATAGTCACTTTTTGGTTTTGGTTGAGGTGTTTTTGTAAAAACAAATTTATGGGACGGTTTTCTACATTGAGAAGTGGTGATAATTGGTGAAAAAATCATTTGAAGGTATGTGATTGAGTTAAGGATAACCTGGATTTTAGTAATGGCGACTTGTGGCCGGCTTCAAGAGTTTAAGTGCATAAGGACAGTTTGTATATTCCCCGAGTTCAACTACATATGTTTAATATTCCCTCCGTCCCTAAAATATTGCCCCAAGTACTTTTTCTCACTTTATTATGAATTGGGTATACTCAAAAGTAAATTCGGTAAATTTATCTTTTAGTTAGATTAAATAATTATTTGTGAGGAGAAACATGTGAGGACTATAAACCAAATAAGGTATGGGGAAACAAATAGGGATATCCATTTATGGTATATGGGCCAATCTTTTAAGGACAAAGGGAGTATGTAAGTCGAACTGGTTGTCTATTGCTTCTAAAGGGAAAAAATGGGATAATTTTTTGAGCCCTTTTTTTTGTTTGTGTGGTACAATACATTTGGGTCTTCTACTCTCAAATTCTAATGCTAAAGTATTTAGGAAGAGCTTCCTTGACTAGAATCTGGCTTTCAATCCTCTCTCTCTTCCCCATCTCTCTCTCTCTCTAATTCTAATGCTAAAGTATTTAGGAAAACCTAATGCGGGCTTCAAAAATTCTAATGTTGGTTTCTTTTGTTTAAAATTAAATAGACTATCGGGTTAACACTATACATGTTCATATATATTTTTTAGAAAATGAATACCAGAAGCGTTACATATTCACTCAAAAGTTTGTTAGTGTTACATTAGACTCAGAAAAAAGCCCTGTTACTGTTGAATTTCTGTGGTCATTCATAATAACATTGAGAGTTTGAAGCTATAAGACCAATGAAGCATACACTAAATAAATCTAGTAGCTAACACAAGCCATTTCTAGCTACCTACATTAACAGCTAATAATCTTCAGACTCTTAAGTCTTAAGCTTCTGCTTGCTTGTTATTTGAGTGTTTTTGTTTTGTAAATGTGAGTTCCTTTTTCAGTTCTGCGTAGCATTTTATCTTATTAAATATATTCAGCAATGCATTTGATCACCTCATGTTTTAATTGTTTGATAGTTCAAGTCAGTGTTCTCCCAATTCAAGAATGTCAAAGTTATAAATTTAATATCAATTCAAGATGCCTTTATTGGGTTTGCTGACAAGGTAAGTTTCCGTTTCAAAATATTTCTTAGCTTTTGTGTGCAGCTATGAAGCACGGGGACGGCTGGGTACACCCGTTTCCCGTACCGGGTACGGGTACGGGACGGGTACGGGACGGGTACGGGACGGGTACGCCCAGGAAACGTCCCCAAAACGAATCTGAATTCTGGGTACGTGGGCCGAAAATGGGTACGGATGGGTACGGGGTGGGTACGCGGGTGGGTACGTATTTGGACAAAAACCAAGTACCCAACAACCATTAAGACCCAAATTCAAATTTTTAGGGTTTTTTTTCCAAATCCCACATTTCTCTCACCTGTCTTCGACTCTTCTTCCGTTCTTCGACGCTGGTCTTCTTCTTGTTCCCTCGCCGCCGGTGTTCATCCTCGCCGGCCAGGCGGCGGCGAACTTCTGGTGCGAAGTCACCTACAACTAAGTGCGAGTGTGCGACAGCGATTCAGCGAAGGAGCGAACAACGACGAGGAAGTGCGATAATACTTGGGATCCACCACAAATATGGATGAATTGTTTGTTCTCATGAATTGTACCTGTCGTGGTTTTGGTGTTGTACTACTAGGAGTCTAGCTGTCAACCAATTTGTCCACTTTATAGTACCAAGTATTATTTATTTCTTTATTTTTGAATTTCTTATAAAGGATTAGTTGTCAACATTAATTTGTCCACTCTTTTACTGTGTAGGACACTTGTATTTCTTTTTTTCTTTTTTTTTTCTTTTTTTTTGAGTTTTGATTAGAGCTTAAATATGTACCTTTTTTTCTCAATTTAAACGAAATTGTATTATGTTATCGAAAATCGGATTTTAAAATTACTCAAAACGTATTTGTAATATATATTATTTAATTTTTTTTGCCGAATCCAAGCCGTACCCGTTTTTACAAATTTTGGTTTTGTCGTTTTCCGTCCCCGTACCCGTCCCCGTATCTGTTCCCGTATCCTTATCGGTGCTACCTAGGTGTGCAGTGCATGCTGCTTGCTACCGTAGTTTCTGTAATACTTACATGGTAATATGCTCATTTAGGAGAGAGAACAGAAGTTCGAGAAACGTGTTAAACGTTATGTAAGCATATGGTGTTGTGTGATTAATAACACACCAGGTCCATATATATTATGATATGTATTGGGACAAGAAACCTAACTGGAAACCATTACCACCACAAAATCCAGAGGATGATCACCCTCCAGTATAGCTGCCTAGACTGTATGTCCTTACAACACGAGAACTATGAACGCATTACACGGAGAGACAAAAGCATGCAATCATCCGACAGACATTTGTAGACAATATTTCAAGTTTGACAGGCAGCTGGCAGTGGCAGTACTCCAACAGAGGAAAACATTTTGATTATTGGTGCAATGCTAGCTGCAACTCAGGCATACAAAGAGAAGTCTTGCCCTCTTCTAGGGCAGGGCAGGGCAGGGCAGGGCAGAGAAGTTGTTGCAATACTATTCTGATTATGATATGAGAATTCTGTTGAATCACTGATCTAGATAAAAAGATGTGTTCATAATTGTAGCTAAACATTTCTTTCATTCAATTTAGTTATATACCAAGTTGTATCCTGGTGCATTTGTTCCAATGTAATTGAACTAAAGCACCAGTAAACAAAATGGTGCATGCCTCAGTTTGCCACAATTTTTTGTAGTATAAACAAATTTGAATACTTGTGAATTTTACCATATTAATCACACTTTTTTGTCTTTGCAGGTTTGCGTGCAGGTCATTATAGTTGAGAAATTAAGAAGCTACATCAATATGAATGACAAGATTTTATTGTATCTTAGTCTCTTTGATGTAAATAATTATTTTATTTATTTCATTTTAAGATTTTTCACCTACACAACAAAACCTTAATGTAATCTTGAACACATTTTCTCCCCTCAAGTTAGTGGTTCCTTGTCTCAATTAAGATCTTTTATTGGCTGATATATATGGTTTCCACAACTATAATTGTTTGACTGGGGTACGAGATAGGTAGTTGAACTTGTAGCCTTGAATATGATGCTCGTTGTCTTTGGTAACTCTCTATTCAATTCTTCCATTTGGCC ATGTCCCTAAACCTTGAACTTTTTCAACTAGAGTGCATCGGGTTAAGAATGGTGAGAAACGATCCTCTTGGTACCTCAAACCCACTAAAAAAGGTGATTGTGGTAATGAGACTTTACAGGTATGTGATTGAGTTAAGGATAACCTGGATTTTAGTAATGGCGACTTGTGGCCGGCTTCAAGAGTTTAAGTGCATAAGGACAAAGCGTTACATATTCACTCAAAAGTTTGTTAGTGTTACATTAGACTCAGAAAAAAGCCCTGTTACTGTTGAATTTCTGTGGTCATTCATAATAACATTGAGATTCAAGTCAGTGTTCTCCCAATTCAAGAATGTCAAAGTTATAAATTTAATATCAATTCAAGATGCCTTTATTGGGTTTGCTGACAAGGAGAGAGAACAGAAGTTCGAGAAACGTGTTAAACGTTATGTAAGCATATGGTGTTGTGTGATTAATAACACACCAGGTCCATATATATTATGATATGTATTGGGACAAGAAACCTAACTGGAAACCATTACCACCACAAAATCCAGAGGATGATCACCCTCCAGTATAGCTGCCTAGACTGTATGTCCTTACAACACGAGAACTATGAACGCATTACACGGAGAGACAAAAGCATGCAATCATCCGACAGACATTTGTAGACAATATTTCAAGTTTGACAGGCAGCTGGCAGTGGCAGTACTCCAACAGAGGAAAACATTTTGATTATTGGTGCAATGCTAGCTGCAACTCAGGCATACAAAGAGAAGTCTTGCCCTCTTCTAGGGCAGGGCAGGGCAGGGCAGGGCAGAGAAGTTGTTGCAATACTATTCTGATTATGATATGAGAATTCTGTTGAATCACTGATCTAGATAAAAAGATGTGTTCATAATTGTAGCTAAACATTTCTTTCATTCAATTTAGTTATATACCAAGTTGTATCCTGGTGCATTTGTTCCAATGTAATTGAACTAAAGCACCAGTAAACAAAATGGTGCATGCCTCAGTTTGCCACAATTTTTTGTAGTATAAACAAATTTGAATACTTGTGAATTTTACCATATTAATCACACTTTTTTGTCTTTGCAGGTTTGCGTGCAGGTCATTATAGTTGAGAAATTAAGAAGCTACATCAATATGAATGACAAGATTTTATTGTATCTTAGTCTCTTTGATGTAAATAATTATTTTATTTATTTCATTTTAAGATTTTTCACCTACACAACAAAACCTTAATGTAATCTTGAACACATTTTCTCCCCTCAAGTTAGTGGTTCCTTGTCTCAATTAAGATCTTTTATTGGCTGATATATATGGTTTCCACAACTATAATTGTTTGACTGGGGTACGAGATAGGTAGTTGAACTTGTAGCCTTGAATATGATGCTCGTTGTCTTTGGTAACTCTCTATTCAATTCTTCCATTTGGCC ATGTCCCTAAACCTTGAACTTTTTCAACTAGAGTGCATCGGGTTAAGAATGGTGAGAAACGATCCTCTTGGTACCTCAAACCCACTAAAAAAGGTGATTGTGGTAATGAGACTTTACAGGTATGTGATTGAGTTAAGGATAACCTGGATTTTAGTAATGGCGACTTGTGGCCGGCTTCAAGAGTTTAAGTGCATAAGGACAAAGCGTTACATATTCACTCAAAAGTTTGTTAGTGTTACATTAGACTCAGAAAAAAGCCCTGTTACTGTTGAATTTCTGTGGTCATTCATAATAACATTGAGATTCAAGTCAGTGTTCTCCCAATTCAAGAATGTCAAAGTTATAAATTTAATATCAATTCAAGATGCCTTTATTGGGTTTGCTGACAAGGAGAGAGAACAGAAGTTCGAGAAACGTGTTAAACGTTATGTAAGCATATGGTGTTGTGTGATTAATAACACACCAGGTCCATATATATTATGA MSLNLELFQLECIGLRMVRNDPLGTSNPLKKVIVVMRLYRYVIELRITWILVMATCGRLQEFKCIRTKRYIFTQKFVSVTLDSEKSPVTVEFLWSFIITLRFKSVFSQFKNVKVINLISIQDAFIGFADKEREQKFEKRVKRYVSIWCCVINNTPGPYIL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo03163.1 vs. NCBI nr
Match: gi|902237958|gb|KNA24990.1| (hypothetical protein SOVF_010650 [Spinacia oleracea]) HSP 1 Score: 107.1 bits (266), Expect = 3.000e-20 Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1
BLAST of Spo03163.1 vs. NCBI nr
Match: gi|731331524|ref|XP_010676704.1| (PREDICTED: uncharacterized protein LOC104892459 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 95.9 bits (237), Expect = 6.800e-17 Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
BLAST of Spo03163.1 vs. NCBI nr
Match: gi|731331522|ref|XP_010676703.1| (PREDICTED: uncharacterized protein LOC104892459 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 95.9 bits (237), Expect = 6.800e-17 Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
BLAST of Spo03163.1 vs. NCBI nr
Match: gi|731331526|ref|XP_010676705.1| (PREDICTED: uncharacterized protein LOC104892459 isoform X3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 95.9 bits (237), Expect = 6.800e-17 Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
BLAST of Spo03163.1 vs. NCBI nr
Match: gi|729427158|ref|XP_010518959.1| (PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Tarenaya hassleriana]) HSP 1 Score: 90.9 bits (224), Expect = 2.200e-15 Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZQ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_010650 PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.100e-20 Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 1
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CFH0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102380 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 4.700e-17 Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 1
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Match: D7LHX9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_902666 PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 4.400e-15 Identity = 38/55 (69.09%), Postives = 46/55 (83.64%), Query Frame = 1
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Match: B9S1R9_RICCO (Reticulon3-A3, putative OS=Ricinus communis GN=RCOM_0867590 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 9.900e-15 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Match: R0HN99_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10022808mg PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.300e-14 Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
BLAST of Spo03163.1 vs. ExPASy Swiss-Prot
Match: XG113_ARATH (Arabinosyltransferase XEG113 OS=Arabidopsis thaliana GN=XEG113 PE=2 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.600e-16 Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
BLAST of Spo03163.1 vs. TAIR (Arabidopsis)
Match: AT2G35610.1 (xyloglucanase 113) HSP 1 Score: 86.7 bits (213), Expect = 1.500e-17 Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03163.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03163.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03163.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo03163.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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