Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAGTTGATTAATAAAAGTTTAGGTTTCCTTTTAACGCACCAGTATGCACCACTCGTTGCTAACAAAGGCTAGAAAGCCCACATGTAATCATAAACTCACAAGCAACGCAGCTATGATAACCATTTCTGGGTGAAATTTTATACTTGGTAGGATTTTGTGTGTTCAACAATGGCAGTAAATTGCTGCTCTCTCCCCAATACCTCAAATCCAAGAACACCCATTTCTTTTTTCAAATTAAACAAGAAAAAACATAATCCGTGTCACTTTCATTTTCCTCTGAACTCTTCTTCTTCTCTCTCTAAATTTACTTGTCAACTTCACATTGGATTTGATGAAATTGTTACAATTACCCAAAACAAGGTAACGGGTTTCGATTTTTTGTATGTATTTCCATTTGGAGTATAAATTGAATTGAAAGTTGTTAATGCTAATTGTTAAGGTTGTTTATTGGGTAGGTTTTGATTGCAGCAGGAGTATCAGCAGCAGTTGGGCAATTAGCAAAGCCATTTACATCAGTTTTGTTTTATGGCAAAAGTTTTGATATAAGAGCTGTTGTTCAAGCTGGTGGATTTCCTTCTACTCATTCCTCTGTGAGCACACGCTTTAACTGACAAGAATTTTAATGTTTTCTTTCTGAAATTATCAAGTTTGAAAAATAATAGACATACAAATGAACTATTGTTATGCAATGTTTACTCTCTTGTGTCAAATCATCTGCTCTATAAAACATTAAAATTAGCATACCAGGTTTTTGTCAAGATGATAATGTTGCCTATGTCGGTGTTTAATGTTGAATTGTAAGACCTCATACAAGTTCACAAACATTTCTTTTGGAATGCTTAGATTTACTAAGCAAGTGAAAGTGTTTGCTGTATAAACCTTGCATTGTTGTGGCATTTTTATTCATGCATCTGAGAAAAATGTAAGGTTTATTTTAAAATAATATCCTTGTGTTCTAGCAGTAGCATGTCTGTATATTTACACTTGAAGTCTTCAACTGGAATTCATATATTTGTAAGCTGATGTTTTTGCATTTCTTAGGTCTTCTGTTTTTCCAATTGACAGGCAGTTGTAGCTGCTGCAACATCTCTGGCACTTGAGAGGTTGACTTTTATAAAATCTCTTGTTTTGCAATTGCTTTGTTACTTGTTTTGTGATTGTTGACATGTTTTATTCTTATTTTTCAAATACAGGGGCTTCTCTGATTCAATATTTGGAATGAGTGTTGTTTACGCAGGCCTTATTATGTATGATGCACAGGTATTCTACCATTCCTGTAATCTTTCTTTGCTATGGATACCTTGCTGTAGACAGGGATAACTGATGGTGTGTGTATAATACTTGGCTGATTATCATATAAGGAGTAGTTACCAGCAAATGATGTACATTTCCTTGCTGTTTAATATTTCTGGGTTATTTCATACGAAGTATGTACTTATATTATAAACAGCTTAGAGTCGATGACCACTTTTTCTAATTTGATACTGTATATTTTTGTCATCAGGGAGTAAGAAGAGAAGTTGGTATTCATGCAAGAACGCTTAACAAGCTACTGCTAGAGGACCAGATGAAGTCTGTAACTAAAGACCGTGACAATAACATAGATTCTGAATCAGAAAAGTTATCCGTGGGAAACTCAAAAGAGCAGACAACCGCCACTCAATTACTTGGAACTAGGCTGCAGAACAGTACAGCTGAGAAAGAGAAAGAAATACAGAGAACTACTTCTTATAAACCTCTGAAAGAATCAATTGGTCACACTGAGGTTGAAGTTATAGCAGGAGCTATATTTGGTTTCCTTGTGACACTGACTGTTAATGCAATTATGTGATCTTGACTTGTTCAATATATTTTCTATATTCATATCAATATCATTCAAGTTGTTTCTCTGATTCTTTTAATACAAAAATCGCTTGATCTTGCTCTTCA CTTAGTTGATTAATAAAAGTTTAGGTTTCCTTTTAACGCACCAGTATGCACCACTCGTTGCTAACAAAGGCTAGAAAGCCCACATGTAATCATAAACTCACAAGCAACGCAGCTATGATAACCATTTCTGGGTGAAATTTTATACTTGGTAGGATTTTGTGTGTTCAACAATGGCAGTAAATTGCTGCTCTCTCCCCAATACCTCAAATCCAAGAACACCCATTTCTTTTTTCAAATTAAACAAGAAAAAACATAATCCGTGTCACTTTCATTTTCCTCTGAACTCTTCTTCTTCTCTCTCTAAATTTACTTGTCAACTTCACATTGGATTTGATGAAATTGTTACAATTACCCAAAACAAGGTTTTGATTGCAGCAGGAGTATCAGCAGCAGTTGGGCAATTAGCAAAGCCATTTACATCAGTTTTGTTTTATGGCAAAAGTTTTGATATAAGAGCTGTTGTTCAAGCTGGTGGATTTCCTTCTACTCATTCCTCTGCAGTTGTAGCTGCTGCAACATCTCTGGCACTTGAGAGGGGCTTCTCTGATTCAATATTTGGAATGAGTGTTGTTTACGCAGGCCTTATTATGTATGATGCACAGGGAGTAAGAAGAGAAGTTGGTATTCATGCAAGAACGCTTAACAAGCTACTGCTAGAGGACCAGATGAAGTCTGTAACTAAAGACCGTGACAATAACATAGATTCTGAATCAGAAAAGTTATCCGTGGGAAACTCAAAAGAGCAGACAACCGCCACTCAATTACTTGGAACTAGGCTGCAGAACAGTACAGCTGAGAAAGAGAAAGAAATACAGAGAACTACTTCTTATAAACCTCTGAAAGAATCAATTGGTCACACTGAGGTTGAAGTTATAGCAGGAGCTATATTTGGTTTCCTTGTGACACTGACTGTTAATGCAATTATGTGATCTTGACTTGTTCAATATATTTTCTATATTCATATCAATATCATTCAAGTTGTTTCTCTGATTCTTTTAATACAAAAATCGCTTGATCTTGCTCTTCA ATGGCAGTAAATTGCTGCTCTCTCCCCAATACCTCAAATCCAAGAACACCCATTTCTTTTTTCAAATTAAACAAGAAAAAACATAATCCGTGTCACTTTCATTTTCCTCTGAACTCTTCTTCTTCTCTCTCTAAATTTACTTGTCAACTTCACATTGGATTTGATGAAATTGTTACAATTACCCAAAACAAGGTTTTGATTGCAGCAGGAGTATCAGCAGCAGTTGGGCAATTAGCAAAGCCATTTACATCAGTTTTGTTTTATGGCAAAAGTTTTGATATAAGAGCTGTTGTTCAAGCTGGTGGATTTCCTTCTACTCATTCCTCTGCAGTTGTAGCTGCTGCAACATCTCTGGCACTTGAGAGGGGCTTCTCTGATTCAATATTTGGAATGAGTGTTGTTTACGCAGGCCTTATTATGTATGATGCACAGGGAGTAAGAAGAGAAGTTGGTATTCATGCAAGAACGCTTAACAAGCTACTGCTAGAGGACCAGATGAAGTCTGTAACTAAAGACCGTGACAATAACATAGATTCTGAATCAGAAAAGTTATCCGTGGGAAACTCAAAAGAGCAGACAACCGCCACTCAATTACTTGGAACTAGGCTGCAGAACAGTACAGCTGAGAAAGAGAAAGAAATACAGAGAACTACTTCTTATAAACCTCTGAAAGAATCAATTGGTCACACTGAGGTTGAAGTTATAGCAGGAGCTATATTTGGTTTCCTTGTGACACTGACTGTTAATGCAATTATGTGA MAVNCCSLPNTSNPRTPISFFKLNKKKHNPCHFHFPLNSSSSLSKFTCQLHIGFDEIVTITQNKVLIAAGVSAAVGQLAKPFTSVLFYGKSFDIRAVVQAGGFPSTHSSAVVAAATSLALERGFSDSIFGMSVVYAGLIMYDAQGVRREVGIHARTLNKLLLEDQMKSVTKDRDNNIDSESEKLSVGNSKEQTTATQLLGTRLQNSTAEKEKEIQRTTSYKPLKESIGHTEVEVIAGAIFGFLVTLTVNAIM Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02981.1 vs. NCBI nr
Match: gi|902228914|gb|KNA21325.1| (hypothetical protein SOVF_044420 [Spinacia oleracea]) HSP 1 Score: 479.6 bits (1233), Expect = 3.500e-132 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo02981.1 vs. NCBI nr
Match: gi|731318278|ref|XP_010669634.1| (PREDICTED: uncharacterized protein LOC104886810 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 318.2 bits (814), Expect = 1.300e-83 Identity = 183/262 (69.85%), Postives = 209/262 (79.77%), Query Frame = 1
BLAST of Spo02981.1 vs. NCBI nr
Match: gi|567859276|ref|XP_006422321.1| (hypothetical protein CICLE_v10005602mg [Citrus clementina]) HSP 1 Score: 221.5 bits (563), Expect = 1.700e-54 Identity = 140/282 (49.65%), Postives = 174/282 (61.70%), Query Frame = 1
BLAST of Spo02981.1 vs. NCBI nr
Match: gi|698523980|ref|XP_009758807.1| (PREDICTED: uncharacterized protein LOC104211445 [Nicotiana sylvestris]) HSP 1 Score: 216.1 bits (549), Expect = 7.100e-53 Identity = 135/256 (52.73%), Postives = 167/256 (65.23%), Query Frame = 1
BLAST of Spo02981.1 vs. NCBI nr
Match: gi|950969850|ref|XP_014499933.1| (PREDICTED: uncharacterized protein LOC106760985 [Vigna radiata var. radiata]) HSP 1 Score: 214.9 bits (546), Expect = 1.600e-52 Identity = 138/267 (51.69%), Postives = 170/267 (63.67%), Query Frame = 1
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RP61_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044420 PE=4 SV=1) HSP 1 Score: 479.6 bits (1233), Expect = 2.400e-132 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZX9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g036100 PE=4 SV=1) HSP 1 Score: 318.2 bits (814), Expect = 9.300e-84 Identity = 183/262 (69.85%), Postives = 209/262 (79.77%), Query Frame = 1
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Match: V4SEW9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005602mg PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.200e-54 Identity = 140/282 (49.65%), Postives = 174/282 (61.70%), Query Frame = 1
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Match: A0A067F5T5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g040837mg PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 1.200e-54 Identity = 140/282 (49.65%), Postives = 174/282 (61.70%), Query Frame = 1
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QME6_GLYSO (Putative membrane protein yuiD OS=Glycine soja GN=glysoja_026550 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 2.500e-52 Identity = 139/252 (55.16%), Postives = 164/252 (65.08%), Query Frame = 1
BLAST of Spo02981.1 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.700e-10 Identity = 50/159 (31.45%), Postives = 73/159 (45.91%), Query Frame = 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Match: AT3G12685.1 (Acid phosphatase/vanadium-dependent haloperoxidase-related protein) HSP 1 Score: 200.7 bits (509), Expect = 1.100e-51 Identity = 113/208 (54.33%), Postives = 142/208 (68.27%), Query Frame = 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Match: AT1G24350.3 (Acid phosphatase/vanadium-dependent haloperoxidase-related protein) HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13 Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Match: AT1G67600.1 (Acid phosphatase/vanadium-dependent haloperoxidase-related protein) HSP 1 Score: 72.0 bits (175), Expect = 5.900e-13 Identity = 39/106 (36.79%), Postives = 65/106 (61.32%), Query Frame = 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Match: AT3G21610.1 (Acid phosphatase/vanadium-dependent haloperoxidase-related protein) HSP 1 Score: 66.2 bits (160), Expect = 3.200e-11 Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Match: AT3G61770.1 (Acid phosphatase/vanadium-dependent haloperoxidase-related protein) HSP 1 Score: 65.9 bits (159), Expect = 4.200e-11 Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02981.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02981.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02981.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo02981.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|