Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACGACCTCGGACCCTGCTCAAATAGCTCACGAACACACACCAAGATCTCTATAAATATGTAAAATATCCTTTCACTTATCATTACTCCTTATCAATCAAGAAAACCCCCCAAATATCTTGTTAGCTTTTTTGCAAAGAAACGCTGAATATAATATCATCCAAAACCGCTCTAGTAATAAGTCGGTGTTGTCGTGCGCAGGTACAAAACCCGTACGCTATCAGCTCATATATTCTTCCCCAATTCAACAAAATCTCGTTTTCTCTCTCCTCTCCCATCAATGGCACGTCGGTTTTCCCAATACCTAACCACCACCCTCTCCTCCTCCTCCGTCGCATCAACCACCCTTCTAAAACTCCTCCCAAGTTCTCTATGCTCCCCATTTTTGTCCCACCCTAGAAATCACCTCTCCACAAAAGCCCGCCTAATCGAAATCGACCTTGAATCCTCCGATGGCGGTGAAATCGAGGTGATAGGGTTGAAGAAGCTTGAAGATGCTATCCACGGTATCTTCGTACGAAGGCTCGCACCCGATTGGCTCCCTCTCCGGCCAGGTTCCTCTTACTGGGTCCCACCTAAACGATCCTCCGACAACATTATTGAGATTGTGGAGAGGCTCACTAATCCTTTGACTGAGGAGGAGTGTCTTTCTCTCTCCTCTACTCGTGGTTGGCCCTCCTCCTCTTTCTTCTTTGAAGGTACTTCCCCTTATTAGCTTTTTGTTTTCAATTATAATGGCTTCCATTTCTTCTTAATTGTTAGAATTGATTCATGTTATTTTAGGTTTATATGATCATTTATGTGTTGATGTTTTATTGTGGTTAAAATGCTGTATTGATTCGACACGGTTTGATTTCAGTGATCGATTGATCGATCTGGAGAATTGGGTTTGATACTTTGAACACAATATTATGAACTTTAGACATATTAAGTAATAGTTTTTGCATTCGTTGAGACTATTTTGGGATGTCCGGAAAGAGTTGGCAAATAGATTGAGTGATGACACAGTCTATGGTAACTTACTAATTTGTAAAGATGTGAACTTTTTTTTACTAGAGTGCATCATCGGGTTAAGAATGGTGAGAAACGATCCTCTTGGTACCTCAAACCCACTAAAAAAAGGTGATTGTGTATTTGTGTTAGTGGGACTCTTGCAGGTAATGAGAAGCTCAAAAAATGGAGAGACAATGTGGCGATTATATCTGAAGAAAAGGCTATATTTTTGTGAAGGGAACATCATAGAGTTATTTGAACAGTATAGGATATAGTCACTTTTTTTTGGGTTTAGGTTGAAGTGTTTGTGTTAAAACAAGTGTTTAGGACGGTTGTCTACATCGAGAAGTGATGATTATTGGTGAAAAAATCATTTGAAGGTATGTGATTGAGTTGAGGATAACCTGGATTTTAGCAATGGCGACTTATGGTGGGCTTCAAGAGTTCAAGTTCTTTAGGACAGTGTGTTTATTCCCCGAGTTCAAGTACATAAGTTTAAGATGTAAGTCGAACTGGTTATCTATTGCCTTGTAAGCAAAAAAAAAAGATAATTTTCTGAACTTTCTTGTTTTTTTGTGTGGTACAATTCATTGGTCTTCTACACTAGAATTCTAATGCTTACAAAATCAGAAAGAGCTCCTTGACTAGAACCTGGCTTTCAATCCTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNGACTTGTGTCTTTGACATGTTATGGATGATAAAGCTTACTTCTAAAAATTATGTAATGTGGATTGAGAGGACGTGTTCAGACTGTTAGTACATTCCCCCTATATATCCCATCTCTTTCTGATTTACGAAAAACTTGGTTAATGAACCATATGTCCATGTACAACAATAATCTAATGCCCTCTGACCTTCAGAGAGTTTTTTTTTGGGTTAAGGGAAATCTATTGGGGTTGTTGTAACTTGCCTTGCGTTTTGAGCTGATATTAAGAGATAATGGAGCACCAGCTAAAGAGATTGAGCTGGATCCTTTCTGCCAAAGTTCAATTCCAAATGTAGCAGACTAGCCGTGTAGAATAACTTTCAGACTGTTTCTTCCCTACCTAACTGATTGCGTGATCATTGACCTTCAGGGACTTGACTTCTGAGTTCTCACTAAGTGCAATATCAATCCGAGTAGGAGGTGCAGAATTAAAAACTAGCTATCTTCAAATGCTATAATTGGCTTTTTTGGCAGGCCCATGTACCGCCAGGCTGCATTTTTCCCTTTTATCTTTTTCCTGAGGTTTGTAATTTCAGTGAGTAAGCCTTTAGCATTCCTCTGCATTTTCTGTGTATCTGAGCAAAAATTCTGTCCTCCGGTCATGCATTTAGTGGATTTATGTGTAGTAGTTAGCTAATATGTTATATTATTAAGAATTAACGACCCCTCTGTTAATACGGCGTTCTTATAAAGGTTGTAAGGTAGTACAGTTGTTTAAGATTCATGAAGAGGGAACCTCGGAGCCCCTTCCAGAGTTCCAGTTAAGGAAGTATAAACTAAACTGCCCTAAAACTTCAAAGGGTAACATGTAGTTAGTACAGTAGTGTTATGTAAATGTAATATTATTTGACTGATTGATTTCTAGTTGAAAAAAGAGGCTCGAGCTGTCCTTTACAGACCTTTTTCACCGTAAGACGGCAGCCTCTTAACATTCATCACGCCTTTGAAAAAGGAGGCATATTTTACGGGAAAAAGGGATTGTTAATGGAAGTTCCTTACCCACTAATTCTTATTTGGGTTCCTCTGCATGCTTTACTGTAGAAATATCAACTCTCAAGTCTGAAGTACAGGAAAAGTTGATAAATGCCTTATTTTAGTCCCTGGCCATTTCTTCAGTCAGATTATCTCTTCGTCGTTAACTATGCTTTCTTGCTTTTGGTGACAGGGTCAATCAGACATAGCACTCCTGTGCAAGTAGAGGTGCAGGTACATGACTCGAGCAACTTAGGGAAGCCATCAGTATCTGAGGATGAGGAGTAATGATCTGTATTTATGGCCAGTTTACTCTCTAGCAGACGTCTGATGGTAAGCAGTATCCAGTGTCTGTATTTTTAGCGTAGATCTGAAAGCCATTTGGTGTACGATGTACCCCCCATTCCCCCAAAACCATGATAGCAGGTTTTTCAATTTGCATATATTGGTGCTGAATTCTACTGTGAGCTCAGGATTCTGGTTATATCTGTTGGGTTGATAAATTTCTGCAGTCTGATGTATTTGTAGCATCTTTGCTCAATTAGAACAGTTGTTATAAATGAATGTGTATTTAGGAAATCTCGTAGAAAACTCGACTTATTATGAATCGTAATACCCTGTATGTTCAAGTTTGTGTCTGAAAACCTGGTTGAATGTCTGTTCCTCCTATAGGATTCCAACTTTTCCCGTAACATCATAACTGTTATCGCTCTTTTTTTTTGGATAATCTATTACTAAAAACAGATGAAATGTTAATTTGACTCTGGAATCTGGTCCAAGAAACCTTTATCTTTCACTATGTTGATTATAAGCTATGGGTGTGTGTAAAGGCTTGTTGTTTCTCCTTAGTTGATTGTATGCGTGTAATTGTATTTTCTCTTACAGATATACTGTTCGAATCTACAGGCTTCTGCTCGTGCAAGGGTTGATCACGAAGTCATGAAACATTTATTCTGGAAGGCAAACAACACAAGTATACTGGCATTTGTACATAATTGTAACCTGTAGTTTCCGCAGCAAAAAAGTTTACTGTCACCTTTTTCTGATGTCCATATGGTAAAGCTAGGTTAGTTGTGGAAACTCATCCTGTATTTGTTTCTTGCACATCGACTCAGGAGAAAAATAAATACAAGTGTGATCTAATTTATGCGGGAGCATTTCTACATTCTGACTCAAATCTTGTGTTTTTTTTTAACTGTTTTTTCCATGTTTGTCTTATGTTGCAGTCATTTTAGCCGATGCAAATTTAATTAGGATACTAATGTTTTAGTGTTTTGATTGTCAAACATTCGACTATTTTCTGTTGTATTGTGGATTTGGCCTGAAATAGCAAGGCAAAACCTCTGATTCCCTTTTAGCATATTACCGTGTCTAAGCAAAGTAAAACTCAAGTTTTTTGTATTCATTATATCCAACTGAGTCTGAATATATA ACGACCTCGGACCCTGCTCAAATAGCTCACGAACACACACCAAGATCTCTATAAATATGTAAAATATCCTTTCACTTATCATTACTCCTTATCAATCAAGAAAACCCCCCAAATATCTTGTTAGCTTTTTTGCAAAGAAACGCTGAATATAATATCATCCAAAACCGCTCTAGTAATAAGTCGGTGTTGTCGTGCGCAGGTACAAAACCCGTACGCTATCAGCTCATATATTCTTCCCCAATTCAACAAAATCTCGTTTTCTCTCTCCTCTCCCATCAATGGCACGTCGGTTTTCCCAATACCTAACCACCACCCTCTCCTCCTCCTCCGTCGCATCAACCACCCTTCTAAAACTCCTCCCAAGTTCTCTATGCTCCCCATTTTTGTCCCACCCTAGAAATCACCTCTCCACAAAAGCCCGCCTAATCGAAATCGACCTTGAATCCTCCGATGGCGGTGAAATCGAGGTGATAGGGTTGAAGAAGCTTGAAGATGCTATCCACGGTATCTTCGTACGAAGGCTCGCACCCGATTGGCTCCCTCTCCGGCCAGGTTCCTCTTACTGGGTCCCACCTAAACGATCCTCCGACAACATTATTGAGATTGTGGAGAGGCTCACTAATCCTTTGACTGAGGAGGAGTGTCTTTCTCTCTCCTCTACTCGTGGTTGGCCCTCCTCCTCTTTCTTCTTTGAAGGGTCAATCAGACATAGCACTCCTGTGCAAGTAGAGGTGCAGGTACATGACTCGAGCAACTTAGGGAAGCCATCAGTATCTGAGGATGAGGAGTAATGATCTGTATTTATGGCCAGTTTACTCTCTAGCAGACGTCTGATGGCTTCTGCTCGTGCAAGGGTTGATCACGAAGTCATGAAACATTTATTCTGGAAGGCAAACAACACAAGTATACTGGCATTTGTACATAATTGTAACCTGTAGTTTCCGCAGCAAAAAAGTTTACTGTCACCTTTTTCTGATGTCCATATGGTAAAGCTAGGTTAGTTGTGGAAACTCATCCTGTATTTGTTTCTTGCACATCGACTCAGGAGAAAAATAAATACAAGTGTGATCTAATTTATGCGGGAGCATTTCTACATTCTGACTCAAATCTTGTGTTTTTTTTTAACTGTTTTTTCCATGTTTGTCTTATGTTGCAGTCATTTTAGCCGATGCAAATTTAATTAGGATACTAATGTTTTAGTGTTTTGATTGTCAAACATTCGACTATTTTCTGTTGTATTGTGGATTTGGCCTGAAATAGCAAGGCAAAACCTCTGATTCCCTTTTAGCATATTACCGTGTCTAAGCAAAGTAAAACTCAAGTTTTTTGTATTCATTATATCCAACTGAGTCTGAATATATA ATGGCACGTCGGTTTTCCCAATACCTAACCACCACCCTCTCCTCCTCCTCCGTCGCATCAACCACCCTTCTAAAACTCCTCCCAAGTTCTCTATGCTCCCCATTTTTGTCCCACCCTAGAAATCACCTCTCCACAAAAGCCCGCCTAATCGAAATCGACCTTGAATCCTCCGATGGCGGTGAAATCGAGGTGATAGGGTTGAAGAAGCTTGAAGATGCTATCCACGGTATCTTCGTACGAAGGCTCGCACCCGATTGGCTCCCTCTCCGGCCAGGTTCCTCTTACTGGGTCCCACCTAAACGATCCTCCGACAACATTATTGAGATTGTGGAGAGGCTCACTAATCCTTTGACTGAGGAGGAGTGTCTTTCTCTCTCCTCTACTCGTGGTTGGCCCTCCTCCTCTTTCTTCTTTGAAGGGTCAATCAGACATAGCACTCCTGTGCAAGTAGAGGTGCAGGTACATGACTCGAGCAACTTAGGGAAGCCATCAGTATCTGAGGATGAGGAGTAA MARRFSQYLTTTLSSSSVASTTLLKLLPSSLCSPFLSHPRNHLSTKARLIEIDLESSDGGEIEVIGLKKLEDAIHGIFVRRLAPDWLPLRPGSSYWVPPKRSSDNIIEIVERLTNPLTEEECLSLSSTRGWPSSSFFFEGSIRHSTPVQVEVQVHDSSNLGKPSVSEDEE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02915.1 vs. NCBI nr
Match: gi|902230167|gb|KNA21743.1| (hypothetical protein SOVF_040400 [Spinacia oleracea]) HSP 1 Score: 334.3 bits (856), Expect = 1.200e-88 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo02915.1 vs. NCBI nr
Match: gi|731354110|ref|XP_010688408.1| (PREDICTED: uncharacterized protein LOC104902353 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 201.4 bits (511), Expect = 1.200e-48 Identity = 113/173 (65.32%), Postives = 128/173 (73.99%), Query Frame = 1
BLAST of Spo02915.1 vs. NCBI nr
Match: gi|720055897|ref|XP_010273529.1| (PREDICTED: uncharacterized protein LOC104609040 [Nelumbo nucifera]) HSP 1 Score: 147.9 bits (372), Expect = 1.600e-32 Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 1
BLAST of Spo02915.1 vs. NCBI nr
Match: gi|720012560|ref|XP_010259901.1| (PREDICTED: uncharacterized protein LOC104599177 [Nelumbo nucifera]) HSP 1 Score: 140.6 bits (353), Expect = 2.600e-30 Identity = 85/170 (50.00%), Postives = 108/170 (63.53%), Query Frame = 1
BLAST of Spo02915.1 vs. NCBI nr
Match: gi|548854561|gb|ERN12471.1| (hypothetical protein AMTR_s00025p00162300 [Amborella trichopoda]) HSP 1 Score: 135.2 bits (339), Expect = 1.100e-28 Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 1
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQI8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040400 PE=4 SV=1) HSP 1 Score: 334.3 bits (856), Expect = 8.400e-89 Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BPS4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g198000 PE=4 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 8.500e-49 Identity = 113/173 (65.32%), Postives = 128/173 (73.99%), Query Frame = 1
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Match: W1PX98_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00025p00162300 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 7.500e-29 Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 1
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Match: A0A124SI81_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009730 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 3.700e-28 Identity = 83/175 (47.43%), Postives = 115/175 (65.71%), Query Frame = 1
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Match: A0A103Y2Q5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020302 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 3.700e-28 Identity = 86/178 (48.31%), Postives = 112/178 (62.92%), Query Frame = 1
BLAST of Spo02915.1 vs. TAIR (Arabidopsis)
Match: AT1G16840.4 (unknown protein) HSP 1 Score: 109.8 bits (273), Expect = 1.700e-24 Identity = 74/173 (42.77%), Postives = 100/173 (57.80%), Query Frame = 1
BLAST of Spo02915.1 vs. TAIR (Arabidopsis)
Match: AT1G78890.1 (unknown protein) HSP 1 Score: 100.5 bits (249), Expect = 1.000e-21 Identity = 75/174 (43.10%), Postives = 97/174 (55.75%), Query Frame = 1
BLAST of Spo02915.1 vs. TAIR (Arabidopsis)
Match: AT2G19180.1 (unknown protein) HSP 1 Score: 94.0 bits (232), Expect = 9.700e-20 Identity = 57/149 (38.26%), Postives = 83/149 (55.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02915.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02915.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02915.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo02915.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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