Spo02792 (gene)

Overview
NameSpo02792
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_122 : 421915 .. 425142 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGGTTAGTATGCTACCCAATAGCATAGAGTCTATTACTTCTACCCAACTTCCAGAATTTTCTACCCAACAAGGGTTGGATAATATCGACGTACAAACTTATACTACTACTCGAACTCGAAAACGCCACACATGTAACAAAAAGAAAAGTAGTTGGTTGGACAATTAATGATGATTGTCTTCTTGCCACCGCATGGCTAAGTAGTACTAAAAATAAAGTCGTTGGCAATTCACAAAAATCAGATGATTATTGGATACAAGTGTCAGAGTTCTACAATGAAAATAAGACGGAGGATCAAGCGCCAAGAGAACCAAACCATTGCAAGCAACATTGGTACGTGGACCATCAATGGAGCAATTAATAAATTTGAGAATCATCGAAGACTTCGAAATAGGGGAAGACATCACAAATTGCAGCAGAACTTGGTCGAGCACTTGTGGGGGCTTTTCGGAGAAAATGATAATTAATCTAATTCATTTATGCTTTAAGTATTTTTAATGAAATTTTATGTATTTCAATTTTTTAAGGAAAATTTTATAATAATTTTTTTCAATAGTTATATTTTTCTCTATTTTGATAACATACACGGGGATATTATTTATTATATGCATAAAGAGTAAATTAATATGAGTTGGAAACAAAATATGATACACGTTTTAAGAAGTCTTAAATGAATCTTAGGATTGAAGAGTTAAAATTGGTTGAGTCGTAATGAGTCTCAAAATATTATAAAATATAAAAATAATATTAAATGATAGTGGAAAGCTGACATGGCATATGGAAAAGTCTTAAGACAAGACTCCCCTTGATGTTGCTCTTATCACTTAAACCACAATCTATATTTCTCTCTCCGTTTATTCGACCTCTAATGTATGTCCATGTTATACATTCACTCTATAGAGCATTGGGTATCATTATTGATTGTAATTTAATGACTACTAATTGTACAAATATAATATTAGTTTCCTTACAATTATACATCAACATTTGGTGGATCTCAATCTATCGTTTAGTTTTTTAAGTTTTCAACCTATGCCTTTTATTGCTTATTTTTTTCACAATTATTTATTACTCCATTATAACGTACTATTTAAGTTCTTTACTTTTTTTATAACTAATTTATTGTAGAAGCTAAAAAGATGATTATGATGTTCATATGCCATTTGCTACTCCTATCGGTTTAACCTTTTTCACATTATGACCCATATTTCTGCTACAATTTTTGATTTTCTTTTATCATATGTTATCCATAAAAAACTAATGCATCCAATAAAGATTATATCATTCTCATCCATCATACAATATGAACTTATTTAAAATAAATTTTAAGATCATGTATTCAGCGCGTAAAACTAAATTATTTATGACTTATTGCTTTAAGAAACAACGTTAGAAAAAATGATCGACAATCTAACATTTTTTTTATCTACTATATATAATTACAACCTAACATCTATAAAATAAGAAAAAGGTATGTGACTAAAGAAATTAGATTTTTTTAATTAATTAATATTTAGTTCCTGTTCGGCAAAATTAGCGCTAGCGGGTAGCGGTTAGTTGTTGAGTAGCGGGTAGCGGTTAAAGTAGCGAGTAGCGGTGAATAGTAGCGGGTAACGGTTAGCTGTCAAAGTGGCGGGTAACTAATATGAGTGTTCGGTAAAAGTAGCGGTTGATATTATAAAATAAAATTAAAAGCAAGAATATTATTTAAAACTTTATTATAAATTTGTCAAACGCTACCTTACTTTAACAAACACTAACATATTTTACAAGTAGTGTCTTAACTAGGTCAAAACGCTACCCGCTACCTCAAACGCTACCGCCGAACACGCCCTTAGACCTTAATCATGATGAATAATATATACCATTATAATTCAGATAATTGTTAAAAAGAAGTCATTTTAAGATAAAAATCACATTTGTTGCATTGCATTGCTATAGATCTTTTAAACCATTTTCTTAGTTTTCGATTAGTAGTTTGTGACGAAGTCTTGAAATGGGTATTAAGAAATTGATTAAGATGCTTTCATAAGAAGAAAAAAAGGTGTAATTATTTTACGATAATAAATATTAATTTATTAATATCGGCTAATACTCCCTCCGTATTTATTTAAGAGATACACTTGGCTGGGTACGGGTATTAAGAAAAAGAATTGAATGAAATAAATTAATAAAACAAGTGGGGTTGGGTAGATATTTTAATAAGAAAAATATGTGGGGACCATGTCATTTTAGGGAGTAAGGGGTGGGGGCGGGGTGTAGATATTATTTAATTAGATGGTGGGGTTGATAAGTTACTAAAATTTTTAGGGAGTAAGGGGTGGGGGTGGGGTGTAGATATATTATTTAATTAGATGGTGGAGTTGATAAGTTACTAAAAATGACAAGTATATCTCTTAAATAAATACGGCCTTAAAAGACAAGTGTATCTCTTAAATAAATACAGAGGGAGTATGTGTTCTAAAAATTTACACACACATCGAGTGTATAAAAGACTAGTTATAAAGATGCGAAACGAGTCGCGTGATAAATGCAAAGCCATGGTCACGTACTCACGTGTGAAACAAGTAGTTGAATGTTGGTAAATGGTAATATATATTGGGCCTAAATTGAGCTACCCTTCTTAAGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTTAATTTCAATCTTCTCTCTCCACCTTTTCAATTCAGTGATTGATTCGTCTAATCTGGTTTTAGGGTTTTCAGTTCAATTCAATTCAATTTCTTGCAGAATCTTCAATTGAATCCCCGATCAATTAGAATTTGTGGTTGTTGGGGGTAATGTCTAATTGGGGTTTTGTTAATTAGGGTTCTTGCTTATTGAAATTCATCGTTAATATGTTTGGATTTGGGATTTTCAATTGAAGCCCTGATCAATTAGAATTTAATCTTATTGGGGGGAATTTTAATTGGATTTTATTCATGAAATTGAAATGTAATCGCCAATCTATTTAAGCTTTTTTTGGTAATATCAAGTAAATTGATGACTTTCTTCTTCGAATTGCGTCACAGGTTGA

mRNA sequence

ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTGA

Coding sequence (CDS)

ATGCATAATTCTCATAGTCCCCAAGTGCAAAATTTATCCATCTTTCTCCAAACTCCATCTCAACCCCATTCCTATCCGTTGGATCCTCCAAAATCAGAGAATCCAAATTCAACAACTGGGGTTCTGATTTTTACTTCTTCCTACTATAACTCCCAGTCAACCCCATTTGTTTTTCTCCACAAATTCTCAGATCTCACCTTCAATTTCATCCTTTCAGGTTGA

Protein sequence

MHNSHSPQVQNLSIFLQTPSQPHSYPLDPPKSENPNSTTGVLIFTSSYYNSQSTPFVFLHKFSDLTFNFILSG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02792.1Spo02792.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo02792.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02792.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02792.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02792.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016043 cellular component organization
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0009987 cellular process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0007033 vacuole organization
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005777 peroxisome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0047617 acyl-CoA hydrolase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo156390.76Barchart | Table
Spo088500.76Barchart | Table
Spo012610.76Barchart | Table
Spo251070.74Barchart | Table
Spo148810.74Barchart | Table
Spo254830.73Barchart | Table
Spo087130.73Barchart | Table
Spo270810.73Barchart | Table
Spo008630.73Barchart | Table
Spo119180.72Barchart | Table
Spo049070.72Barchart | Table
Spo169110.72Barchart | Table
Spo185750.72Barchart | Table
Spo149420.72Barchart | Table
Spo158730.71Barchart | Table
Spo097720.71Barchart | Table
Spo108150.71Barchart | Table
Spo212140.70Barchart | Table
Spo007480.70Barchart | Table
Spo250430.70Barchart | Table
Spo057280.70Barchart | Table
Spo228110.70Barchart | Table
Spo216910.70Barchart | Table
Spo142250.70Barchart | Table
Spo131840.70Barchart | Table
Spo140870.70Barchart | Table
Spo086450.69Barchart | Table
Spo205440.69Barchart | Table
Spo019250.69Barchart | Table
Spo096050.69Barchart | Table
Spo119230.69Barchart | Table
Spo096710.69Barchart | Table
Spo048630.69Barchart | Table
Spo192450.69Barchart | Table
Spo239350.69Barchart | Table
Spo028900.69Barchart | Table
Spo065060.69Barchart | Table
Spo050930.69Barchart | Table
Spo146670.69Barchart | Table
Spo169960.68Barchart | Table
Spo229550.68Barchart | Table
Spo085210.68Barchart | Table
Spo051350.68Barchart | Table
Spo092900.68Barchart | Table
Spo227600.68Barchart | Table
Spo094990.68Barchart | Table
Spo217230.68Barchart | Table
Spo179890.68Barchart | Table
Spo162400.68Barchart | Table
Spo125050.68Barchart | Table
Spo199650.68Barchart | Table
Spo234020.68Barchart | Table
Spo246130.68Barchart | Table
Spo084940.67Barchart | Table
Spo016860.67Barchart | Table
Spo018580.67Barchart | Table
Spo031070.67Barchart | Table
Spo036070.67Barchart | Table
Spo048380.67Barchart | Table
Spo076190.67Barchart | Table
Spo118540.67Barchart | Table
Spo158810.67Barchart | Table
Spo172090.67Barchart | Table
Spo177260.67Barchart | Table
Spo198700.67Barchart | Table
Spo210550.67Barchart | Table
Spo264300.67Barchart | Table
Spo005360.66Barchart | Table
Spo114820.66Barchart | Table
Spo219250.66Barchart | Table
Spo220280.66Barchart | Table
Spo093500.66Barchart | Table
Spo003440.66Barchart | Table
Spo082450.66Barchart | Table
Spo062930.66Barchart | Table
Spo235490.66Barchart | Table
Spo054050.66Barchart | Table
Spo248080.66Barchart | Table
Spo029320.66Barchart | Table
Spo154610.66Barchart | Table
Spo145370.66Barchart | Table
Spo173910.66Barchart | Table
Spo271980.66Barchart | Table
Spo137740.66Barchart | Table
Spo136140.66Barchart | Table
Spo185890.66Barchart | Table
Spo188000.66Barchart | Table
Spo130290.66Barchart | Table
Spo198500.66Barchart | Table
Spo270040.66Barchart | Table
Spo129990.66Barchart | Table
Spo201870.66Barchart | Table
Spo116230.66Barchart | Table
Spo174980.65Barchart | Table
Spo176100.65Barchart | Table
Spo005260.65Barchart | Table
Spo115580.65Barchart | Table
Spo214940.65Barchart | Table
Spo249930.65Barchart | Table
Spo109400.65Barchart | Table
Spo050730.65Barchart | Table
Spo197380.65Barchart | Table
Spo061640.65Barchart | Table
Spo170320.65Barchart | Table
Spo247360.65Barchart | Table
Spo138750.65Barchart | Table
Spo232190.65Barchart | Table