Spo02663 (gene)

Overview
NameSpo02663
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 88779774 .. 88782166 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGCGGGATTCCAATTTTCCAATTCTTTGATATTGAAATTTCTTTCAACTTTTCCCTCAAAAAATTCTTCACCCTAACTCAGACTAATATCGCAAATGTCGATACCCACCATTGCTTCCCCATCTTCTCCTCTGGTAACTGCATCTCCCTATTCGACGTCGTCTGGCTCTCCCATCCATCTCCAACTTCATATCTTCCTTTCTTTTAAAATTTAGGGGTTTCTGCTATTTGGTTCAAGTTCTGAATTTCTAGGGTTCTTTGCAGAATTGAACGAGAAGAGAAAAAATTGGCGATCTCCTCTATTGCAAATTCAAGCAATCGCAATTGAACGTTTTTCACTAGAAGGTGCTCGACAATGGCAGTTACTTGATCGTCTTCCTCCCAAACCCCCCTTTGAGGTATTTCTCTTTCCCTCTTTCTCCTCACCTTTGTTAATTCTCTTAATTATTTCTAATGTGTTTCTATAACTCGTCAATTTGTGCAGATTAAACATCACGAGGTTGCAATTGTAAAGGTCAACAATCTACCTTCTTCTAGGGTTAGATTCTAATTTAACTCTTTTACTTCCAATTTTCATGGTATTATGAATTTTACATGCCTGATTAAATTTCATTTCAATTGCGGTCAAGTAATTCTATGGCATTCCATTCCTGTACTAGTAGTCCTTCAATATTAATGTGTGACAAGCTGTAGAATTTACAGCCAAATAGACCAAAACTTACATAGGGATTGGTTATTGGGTTATAGAGAATTGGAGATGGAACATAGAGAAGTTGATTTTTAGGTTAAGCATTGCTATTATTGATTTGTTTTTCCATTGAATAAAGAGGAAACTAAAAATAAATTTTGACGCAGTAGAAGTCCTTTGACAATTGATATAATTTACATGTTCAATGGACTTATTAAAAAGCTAAAAAAGTTGTAGATTTGTGAAATTTTGGACACACAGAGTACTGATTTTAATGTATTTATCTTGATAGGAAAAACATGTCATGATTTGGGATGTTATGTTAATAAAAATCCAATTGCAAGTTATTATCTTATTTCATGTAGGAAACAATATCTTTATTAAGTTATAATGCTATTTGCTTCTAATTTTCTCACTAATTTATGATAGTTTGTCAAAATGGAAGAGTGCGAGTTGCTTAATAGCCGATCCTGTTGACATATCACTTGGCTCCTAGGTTATGGTATACTCATGCTTGTGTTGTTTATTGTTTCTTTGTGTTTACATTCCGGGATATGTTTGGTGCTCTGTACTACTGGCATATTTGTATGAAACTTCTAAAGTTGACCTACTGCAAAATTAAAATGGTTGGACAGGTCAACCTGAAGGAATACCTGGACCGAGTTTTTTTCTATGATGCAGTGATGAATGAGGAAGCTTCAAATGATAAGGTAAGATGATGTTAAAGGGACGATATGCAGTGATGTCAATTTGTTTTCTTGCATCTTGTTGGATCTTTTAAAGTGACAGAGTTACACGATAAATTTATGGTTTAGGTGATTGATTACTTTATGAAACACACCATATTGTCGTGCTTGTGATTTCATCAATGGGTTGTCCTACTAATGTTACGACTTTGGGTGTTGAAGTTCTTTCTGATGTTGTACAAGCTCTTAAGGAAGCTTTTGATGTTTTTTTTAATGACAATATTGCTAACTTGTTGGTAGTATAAGTGATGAGCTGGTGGATCATTTTGTGAAGGTATTCTCAACAATTACGGTATTGAAAAGCTAAGTGATGTATTATCGATTTATCGGAAACTCACTTGAGAAGGGTGAAGGATAGCTACTGTATTTTGATGTAGTCTAAAACTCACTGCAACCCGCAAGATGTGTATGATGGAACTTAATGTTTTTATAGAAATATAATAGAACTTGCTATTTTCTCATTTTTTGTCTACACTTGCTTAAATCATTGTGGTATGCTTTTGTTATTTTCTCAATATTATTGGTCTGCTTTCTTTTTCTAAATTTCGGAATTAGTTGAGGTTAAGGTTGAGTTTGATTTGTGTTACTCTTTGTTAGCCTGCACTTCCTTGTTAATTGTCTTGTTGAAGTGGCTTCTACATACAGATACACTTTCTTGCTTGACCTTTTCTTTCAGCATTTCATTTTCAAAATAAAAATTAGAAAGCTTTATTTGTTTTGTTCTAATGCATGTCTTTTCATTAATAAAGATATGACATAGGTATGTACTTATTAAATAATTTGACATGCCTTTCATTTTTAATTTGCAGGGACTTCGGTTGAAAAAATTAAGCCAAGTGAATGACATCTTTATTTACTTTATTTTGTTAGATGAATAAACATTTGATTAGTTATTTATTTGTATGTTTTGTATTTGTTAAGTTTAGAAACTTGCTAATGCAAGAGGATGTAATGTATGA

mRNA sequence

GGGCGGGATTCCAATTTTCCAATTCTTTGATATTGAAATTTCTTTCAACTTTTCCCTCAAAAAATTCTTCACCCTAACTCAGACTAATATCGCAAATGTCGATACCCACCATTGCTTCCCCATCTTCTCCTCTGGGGTTTCTGCTATTTGGTTCAAGTTCTGAATTTCTAGGGTTCTTTGCAGAATTGAACGAGAAGAGAAAAAATTGGCGATCTCCTCTATTGCAAATTCAAGCAATCGCAATTGAACGTTTTTCACTAGAAGGTGCTCGACAATGGCAGTTACTTGATCGTCTTCCTCCCAAACCCCCCTTTGAGATTAAACATCACGAGGTTGCAATTGTAAAGGTCAACAATCTACCTTCTTCTAGGGTCAACCTGAAGGAATACCTGGACCGAGTTTTTTTCTATGATGCAGTGATGAATGAGGAAGCTTCAAATGATAAGAAACTTGCTAATGCAAGAGGATGTAATGTATGA

Coding sequence (CDS)

ATGTCGATACCCACCATTGCTTCCCCATCTTCTCCTCTGGGGTTTCTGCTATTTGGTTCAAGTTCTGAATTTCTAGGGTTCTTTGCAGAATTGAACGAGAAGAGAAAAAATTGGCGATCTCCTCTATTGCAAATTCAAGCAATCGCAATTGAACGTTTTTCACTAGAAGGTGCTCGACAATGGCAGTTACTTGATCGTCTTCCTCCCAAACCCCCCTTTGAGATTAAACATCACGAGGTTGCAATTGTAAAGGTCAACAATCTACCTTCTTCTAGGGTCAACCTGAAGGAATACCTGGACCGAGTTTTTTTCTATGATGCAGTGATGAATGAGGAAGCTTCAAATGATAAGAAACTTGCTAATGCAAGAGGATGTAATGTATGA

Protein sequence

MSIPTIASPSSPLGFLLFGSSSEFLGFFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVNNLPSSRVNLKEYLDRVFFYDAVMNEEASNDKKLANARGCNV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02663.1Spo02663.1mRNA


Homology
[Close]
BLAST of Spo02663.1 vs. NCBI nr
Match: gi|902235249|gb|KNA23823.1| (hypothetical protein SOVF_021420 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 185.3 bits (469), Expect = 6.800e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1 

		  

Query: 27  FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 86
           F +ELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN
Sbjct: 15  FSSELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 74

Query: 87  NLPSSRVNLKEYLDRVFFYDAVMNEEASNDKKL 120
           NLPSSRVNLKEYLDRVFFYDAVMNEEASNDK L
Sbjct: 75  NLPSSRVNLKEYLDRVFFYDAVMNEEASNDKGL 107
[Close]
BLAST of Spo02663.1 vs. NCBI nr
Match: gi|902235248|gb|KNA23822.1| (hypothetical protein SOVF_021420 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 134.8 bits (338), Expect = 1.100e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 

		  

Query: 27 FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 86
          F +ELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN
Sbjct: 15 FSSELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 74

Query: 87 NLPSSR 93
          NLPSSR
Sbjct: 75 NLPSSR 80
[Close]
BLAST of Spo02663.1 vs. NCBI nr
Match: gi|902228476|gb|KNA21118.1| (hypothetical protein SOVF_046190, partial [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 3.200e-9
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1 

		  

Query: 27 FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPP-FEIKHHEVAIVK 85
          FF ELN+KRK WRS L+QIQA AIER SLEG      L    P PP FEIKHHEV I+K
Sbjct: 1  FFLELNKKRKFWRSALVQIQATAIERCSLEGDDNGNYLTVFLPNPPSFEIKHHEVEILK 59
[Close]
BLAST of Spo02663.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWJ1_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_021420 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 4.700e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 1 

		  

Query: 27  FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 86
           F +ELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN
Sbjct: 15  FSSELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 74

Query: 87  NLPSSRVNLKEYLDRVFFYDAVMNEEASNDKKL 120
           NLPSSRVNLKEYLDRVFFYDAVMNEEASNDK L
Sbjct: 75  NLPSSRVNLKEYLDRVFFYDAVMNEEASNDKGL 107
[Close]
BLAST of Spo02663.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYA2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_021420 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.300e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1 

		  

Query: 27 FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 86
          F +ELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN
Sbjct: 15 FSSELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPPFEIKHHEVAIVKVN 74

Query: 87 NLPSSR 93
          NLPSSR
Sbjct: 75 NLPSSR 80
[Close]
BLAST of Spo02663.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNT3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_046190 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-9
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1 

		  

Query: 27 FFAELNEKRKNWRSPLLQIQAIAIERFSLEGARQWQLLDRLPPKPP-FEIKHHEVAIVK 85
          FF ELN+KRK WRS L+QIQA AIER SLEG      L    P PP FEIKHHEV I+K
Sbjct: 1  FFLELNKKRKFWRSALVQIQATAIERCSLEGDDNGNYLTVFLPNPPSFEIKHHEVEILK 59
The following BLAST results are available for this feature:
BLAST of Spo02663.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902235249|gb|KNA23823.1|6.8e-4496.7hypothetical protein SOVF_0214... [more]
gi|902235248|gb|KNA23822.1|1.1e-2896.9hypothetical protein SOVF_0214... [more]
gi|902228476|gb|KNA21118.1|3.2e-964.4hypothetical protein SOVF_0461... [more]
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BLAST of Spo02663.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9RWJ1_SPIOL4.7e-4496.7Uncharacterized protein (Fragm... [more]
A0A0K9RYA2_SPIOL7.3e-2996.9Uncharacterized protein (Fragm... [more]
A0A0K9RNT3_SPIOL2.2e-964.4Uncharacterized protein (Fragm... [more]
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BLAST of Spo02663.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02663.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0005524 ATP binding
molecular_function GO:0004252 serine-type endopeptidase activity
RNA-Seq Expression