Spo02453 (gene) | SpinachBase

Overview


Name	Spo02453
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I reaction center subunit N
Location	chr3 : 64783504 .. 64784892 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGAACTCTAGTGTTCTAGCATGCAGCTATGCTATGTCTGGGGCAGGAGGCTTAGAGCTCAGCTCAAAGGCATCTTCAGTGTCTTGTGTGGCACCATCATCTTTGGGTGGCAGTGAGAAGCTTACCATGATCAAGGCACAAGCCCAAAACTCTCAACAAGACAAGGCTGTCGAAGGACGAAGAGCTGCCCTTTTTGGCTTGGCTGCTGCCCTTGTTGCCACTTCCTTCTCTTCCAATGCTAATGCTGGAGTCATTGATGAATACCTTGAGAAGAGCAAAGCTAACAAGGTTAGTTTTTTTTGTTTTGTTTTTTTCTTGATTTTAATTCGCTTATGCGAAAAATCATTGTCAGCTAGTTTAGTCAGTAAAGTTTATTAGAGATTTTGAGTTCAGGCTAAAACCGGACTCAACCCGTATGATGATAGGTTTTCTAAATGTCAAATGGCTTGTGACCAAATTGAACACAGGTCCTCCAATATGTTAGTACCAACAACGCAAATTATGCGTATTGGTTCTACTTAGCAGTGTATTGGTATGTCAATACCACACGGTACCAAATTAATGAGTACTAGTAGAGTTACTTGCGTCCATTTTGAACACAAGCCACTTTTGACATATACTTCCTCATATGATGACACTTATTGACAGAGATGGTGTTGTGAACTGTTTATTACCAGGAACTGAATGACAGGAAGAGGTTAGCAACAAGTGGCGCCAACTTTGCAAGGGCAAACACTGTACAATTCGGAACCTGCAATTTCCCACTGAATTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGGTTGTTATTAACAGCTAATCATCTATTATCTAATTATTTAGTATTAATTAATCAATAATCCAAACTCCGAACTCGTTTAACATCTGTTTCTGATTATTTTTACAGAAAGTACCCTTCATCTCTGAAGATATAGAGCTGGAATGTGAAGGCAAGGACAAATTCAAGTGCGGTTCAAATGTTTTCTGGAAATGGTGAAATGTATAAAAACCCTCAAATTCATATTCCCATCTTGTTGAAAAATTCTAGTGCAAATCTTATGTATCATGTACTTATTGTTTAAACTGGAGAAGGGTTGAGTAATGATTAGAGCAAAATAGTTCATGGATGAGTTCTGTAACCATTTATATGTTCAAATTTTCTACTCTCATAAGCAACATATGTAGAGATGACAATGGAACTTCATTGAAATCTAACCAACTTGAATTCTGCAAAATGATACGACGTACATGAATACCCTTAAACCAACCCAGAATTCATAGTCGAATCAGCTATATATATACTCCCTCAGACCGAAATGAATAGTCCTACACAGTATTAGGATAACGTTTTACACTGAATAAGATGTCGGCACACTATC

mRNA sequence

ATGGCTTCAATGAACTCTAGTGTTCTAGCATGCAGCTATGCTATGTCTGGGGCAGGAGGCTTAGAGCTCAGCTCAAAGGCATCTTCAGTGTCTTGTGTGGCACCATCATCTTTGGGTGGCAGTGAGAAGCTTACCATGATCAAGGCACAAGCCCAAAACTCTCAACAAGACAAGGCTGTCGAAGGACGAAGAGCTGCCCTTTTTGGCTTGGCTGCTGCCCTTGTTGCCACTTCCTTCTCTTCCAATGCTAATGCTGGAGTCATTGATGAATACCTTGAGAAGAGCAAAGCTAACAAGGAACTGAATGACAGGAAGAGGTTAGCAACAAGTGGCGCCAACTTTGCAAGGGCAAACACTGTACAATTCGGAACCTGCAATTTCCCACTGAATTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTACCCTTCATCTCTGAAGATATAGAGCTGGAATGTGAAGGCAAGGACAAATTCAAGTGCGGTTCAAATGTTTTCTGGAAATGGTGAAATGTATAAAAACCCTCAAATTCATATTCCCATCTTGTTGAAAAATTCTAGTGCAAATCTTATGTATCATGTACTTATTGTTTAAACTGGAGAAGGGTTGAGTAATGATTAGAGCAAAATAGTTCATGGATGAGTTCTGTAACCATTTATATGTTCAAATTTTCTACTCTCATAAGCAACATATGTAGAGATGACAATGGAACTTCATTGAAATCTAACCAACTTGAATTCTGCAAAATGATACGACGTACATGAATACCCTTAAACCAACCCAGAATTCATAGTCGAATCAGCTATATATATACTCCCTCAGACCGAAATGAATAGTCCTACACAGTATTAGGATAACGTTTTACACTGAATAAGATGTCGGCACACTATC

Coding sequence (CDS)

ATGGCTTCAATGAACTCTAGTGTTCTAGCATGCAGCTATGCTATGTCTGGGGCAGGAGGCTTAGAGCTCAGCTCAAAGGCATCTTCAGTGTCTTGTGTGGCACCATCATCTTTGGGTGGCAGTGAGAAGCTTACCATGATCAAGGCACAAGCCCAAAACTCTCAACAAGACAAGGCTGTCGAAGGACGAAGAGCTGCCCTTTTTGGCTTGGCTGCTGCCCTTGTTGCCACTTCCTTCTCTTCCAATGCTAATGCTGGAGTCATTGATGAATACCTTGAGAAGAGCAAAGCTAACAAGGAACTGAATGACAGGAAGAGGTTAGCAACAAGTGGCGCCAACTTTGCAAGGGCAAACACTGTACAATTCGGAACCTGCAATTTCCCACTGAATTTCACAGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTACCCTTCATCTCTGAAGATATAGAGCTGGAATGTGAAGGCAAGGACAAATTCAAGTGCGGTTCAAATGTTTTCTGGAAATGGTGA

Protein sequence

MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo02453.1	Spo02453.1	mRNA

Homology

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BLAST of Spo02453.1 vs. NCBI nr
Match: gi|902156530|gb|KNA06023.1| (hypothetical protein SOVF_184920 [Spinacia oleracea])

HSP 1 Score: 327.0 bits (837), Expect = 1.900e-86
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60
           MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV
Sbjct: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60

Query: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120
           EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV
Sbjct: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120

Query: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW
Sbjct: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 170

[Close]

BLAST of Spo02453.1 vs. NCBI nr
Match: gi|731338210|ref|XP_010680205.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 281.6 bits (719), Expect = 9.300e-73
Identity = 144/170 (84.71%), Postives = 160/170 (94.12%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60
           MASMNSSVLACSYA+SGAGG+ELSSKASSV CVAPSSLGGSEKL MIKAQ+ NS+++ + 
Sbjct: 1   MASMNSSVLACSYAISGAGGVELSSKASSVPCVAPSSLGGSEKLPMIKAQSLNSKEEIST 60

Query: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120
           +GRRAALFGLAAALVATSFS++ANAGVI+EYLEKSKANKELND+KRLATSGANFARA TV
Sbjct: 61  DGRRAALFGLAAALVATSFSTSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAFTV 120

Query: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           QFGTC FP NFTGCQDLAK +KVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 QFGTCKFPQNFTGCQDLAKLQKVPFISDDLALECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Spo02453.1 vs. NCBI nr
Match: gi|590708886|ref|XP_007048403.1| (Photosystem I reaction center subunit PSI [Theobroma cacao])

HSP 1 Score: 231.5 bits (589), Expect = 1.100e-57
Identity = 120/173 (69.36%), Postives = 141/173 (81.50%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQ---AQNSQQD 60
           MA+MNSSVLAC+YA+SG G  EL++K +SV  VA   + G  KL +I+AQ     + ++ 
Sbjct: 1   MAAMNSSVLACNYAISGTGSFELNAKLASVPSVASPVVSGGRKLPVIRAQQAKVSDPEES 60

Query: 61  KAVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
           +A EGRRAA+  LAA L  T+ +S+ANA V DEYLEKSKANKELND+KRLATSGANFARA
Sbjct: 61  RASEGRRAAMLYLAATLFTTAAASSANASVFDEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ELECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. NCBI nr
Match: gi|823140831|ref|XP_012470239.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Gossypium raimondii])

HSP 1 Score: 227.3 bits (578), Expect = 2.100e-56
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDK-- 60
           MA+MNSSVLAC+YA+SG G  EL++K +S   VA   + G  KL +I+AQ       K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGHKLPVIRAQQAKFSDSKGS 60

Query: 61  -AVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
            A EGRRAA+  LAA L  T+ +S+ANAGVIDEYLEKSKANKELND+KRLATSGANF+RA
Sbjct: 61  GASEGRRAAMLYLAAGLFTTAVASSANAGVIDEYLEKSKANKELNDKKRLATSGANFSRA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. NCBI nr
Match: gi|728843979|gb|KHG23422.1| (Photosystem I reaction center subunit N, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 226.9 bits (577), Expect = 2.700e-56
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDK-- 60
           MA+MNSSVLAC+YA+SG G  EL++K +S   VA   + G  KL +I+AQ       K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGRKLPVIRAQQTKFSDSKGS 60

Query: 61  -AVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
            A EGRRAA+  LAA L  T+ +S+ANAGVIDEYLEKSKANKELND+KRLATSGANF+RA
Sbjct: 61  GASEGRRAAVLYLAAGLFTTAVASSANAGVIDEYLEKSKANKELNDKKRLATSGANFSRA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH63_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_184920 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.300e-86
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60
           MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV
Sbjct: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60

Query: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120
           EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV
Sbjct: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120

Query: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW
Sbjct: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 170

[Close]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CA99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132600 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.500e-73
Identity = 144/170 (84.71%), Postives = 160/170 (94.12%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDKAV 60
           MASMNSSVLACSYA+SGAGG+ELSSKASSV CVAPSSLGGSEKL MIKAQ+ NS+++ + 
Sbjct: 1   MASMNSSVLACSYAISGAGGVELSSKASSVPCVAPSSLGGSEKLPMIKAQSLNSKEEIST 60

Query: 61  EGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTV 120
           +GRRAALFGLAAALVATSFS++ANAGVI+EYLEKSKANKELND+KRLATSGANFARA TV
Sbjct: 61  DGRRAALFGLAAALVATSFSTSANAGVIEEYLEKSKANKELNDKKRLATSGANFARAFTV 120

Query: 121 QFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           QFGTC FP NFTGCQDLAK +KVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 QFGTCKFPQNFTGCQDLAKLQKVPFISDDLALECEGKDKYKCGSNVFWKW 170

[Close]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Match: A0A061DJ27_THECC (Photosystem I reaction center subunit PSI OS=Theobroma cacao GN=TCM_001498 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 7.700e-58
Identity = 120/173 (69.36%), Postives = 141/173 (81.50%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQ---AQNSQQD 60
           MA+MNSSVLAC+YA+SG G  EL++K +SV  VA   + G  KL +I+AQ     + ++ 
Sbjct: 1   MAAMNSSVLACNYAISGTGSFELNAKLASVPSVASPVVSGGRKLPVIRAQQAKVSDPEES 60

Query: 61  KAVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
           +A EGRRAA+  LAA L  T+ +S+ANA V DEYLEKSKANKELND+KRLATSGANFARA
Sbjct: 61  RASEGRRAAMLYLAATLFTTAAASSANASVFDEYLEKSKANKELNDKKRLATSGANFARA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ELECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NXA0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G066700 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.500e-56
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDK-- 60
           MA+MNSSVLAC+YA+SG G  EL++K +S   VA   + G  KL +I+AQ       K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGHKLPVIRAQQAKFSDSKGS 60

Query: 61  -AVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
            A EGRRAA+  LAA L  T+ +S+ANAGVIDEYLEKSKANKELND+KRLATSGANF+RA
Sbjct: 61  GASEGRRAAMLYLAAGLFTTAVASSANAGVIDEYLEKSKANKELNDKKRLATSGANFSRA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PER3_GOSAR (Photosystem I reaction center subunit N, chloroplastic-like protein OS=Gossypium arboreum GN=F383_03089 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.900e-56
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMIKAQAQNSQQDK-- 60
           MA+MNSSVLAC+YA+SG G  EL++K +S   VA   + G  KL +I+AQ       K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGRKLPVIRAQQTKFSDSKGS 60

Query: 61  -AVEGRRAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARA 120
            A EGRRAA+  LAA L  T+ +S+ANAGVIDEYLEKSKANKELND+KRLATSGANF+RA
Sbjct: 61  GASEGRRAAVLYLAAGLFTTAVASSANAGVIDEYLEKSKANKELNDKKRLATSGANFSRA 120

Query: 121 NTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
            TVQFGTC FP NFTGCQDLAKQKKVPFIS+D+ LECEGKDK+KCGSNVFWKW
Sbjct: 121 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 173

[Close]

BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2)

HSP 1 Score: 208.8 bits (530), Expect = 4.800e-53
Identity = 116/175 (66.29%), Postives = 135/175 (77.14%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMI----KAQAQNSQQ 60
           MA+MNSSVL CSYA++G+G +EL+ K   V+    SS+G  +K  MI    KAQ      
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVN----SSVGFGQKKQMIMPVIKAQRVVGDD 60

Query: 61  DKAVEGRRAALFGLAAALVATS-FSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFA 120
                GRR+A+  LAA L +T+  S++ANAGVIDEYLE+SK NKELND+KRLATSGANFA
Sbjct: 61  VDGSNGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 120

Query: 121 RANTVQFGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           RA TVQFG+C FP NFTGCQDLAKQKKVPFISEDI LECEGKDK+KCGSNVFWKW
Sbjct: 121 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

[Close]

BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 7.700e-43
Identity = 84/109 (77.06%), Postives = 95/109 (87.16%), Query Frame = 1


		  
Query: 63  RRAALFGLAAALVATSFSS-NANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTVQ 122
           RR+AL GLAA   AT+ S+ +A A V DEYLEKSK NKELND+KR ATSGANFARA TVQ
Sbjct: 37  RRSALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQ 96

Query: 123 FGTCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           FG+C FP NFTGCQDLAKQKKVPFI++D+E+ECEGK+KFKCGSNVFWKW
Sbjct: 97  FGSCKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

[Close]

BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.100e-40
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1


		  
Query: 80  SSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTVQFGTCNFPLNFTGCQDLAK 139
           + +A A + DEYLEKSKANKELND+KRLATSGANFARA TV+FG+C FP NFTGCQDLAK
Sbjct: 22  TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81

Query: 140 QKKVPFISEDIELECEGKDKFKCGSNVFWKW 171
           QKKVPFIS+D+E+ECEGK+KFKCGSNVFWKW
Sbjct: 82  QKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

[Close]

BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-23
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1


		  
Query: 64  RAALFGLAAALVATSFSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFARANTVQFG 123
           R  L GL   L A + +  ANAGV+++ L KS ANK LN++KRLATS AN AR+ TV  G
Sbjct: 32  RRELLGLGVLLGAAALAPAANAGVVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDG 91

Query: 124 TCNFPLNFTGCQDLAKQKKVPFISEDIELECEGKDKFKCGS 165
           TC FP NF GC++LA  K V +I+ED+++ECEGKD   CGS
Sbjct: 92  TCQFPENFFGCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132

[Close]

BLAST of Spo02453.1 vs. TAIR (Arabidopsis)
Match: AT5G64040.2 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 146.4 bits (368), Expect = 1.600e-35
Identity = 89/146 (60.96%), Postives = 107/146 (73.29%), Query Frame = 1


		  
Query: 1   MASMNSSVLACSYAMSGAGGLELSSKASSVSCVAPSSLGGSEKLTMI----KAQAQNSQQ 60
           MA+MNSSVL CSYA++G+G +EL+ K   V+    SS+G  +K  MI    KAQ      
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVN----SSVGFGQKKQMIMPVIKAQRVVGDD 60

Query: 61  DKAVEGRRAALFGLAAALVATS-FSSNANAGVIDEYLEKSKANKELNDRKRLATSGANFA 120
                GRR+A+  LAA L +T+  S++ANAGVIDEYLE+SK NKELND+KRLATSGANFA
Sbjct: 61  VDGSNGRRSAMVFLAATLFSTAAVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 120

Query: 121 RANTVQFGTCNFPLNFTGCQDLAKQK 142
           RA TVQFG+C FP NFTGCQDLAKQK
Sbjct: 121 RAFTVQFGSCKFPENFTGCQDLAKQK 142

The following BLAST results are available for this feature:

BLAST of Spo02453.1 vs. NCBI nr
BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
BLAST of Spo02453.1 vs. TAIR (Arabidopsis)

BLAST of Spo02453.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902156530\|gb\|KNA06023.1\|	1.9e-86	100.	hypothetical protein SOVF_1849...	[more]
gi\|731338210\|ref\|XP_010680205.1\|	9.3e-73	84.7	PREDICTED: photosystem I react...	[more]
gi\|590708886\|ref\|XP_007048403.1\|	1.1e-57	69.3	Photosystem I reaction center ...	[more]
gi\|823140831\|ref\|XP_012470239.1\|	2.1e-56	69.3	PREDICTED: photosystem I react...	[more]
gi\|728843979\|gb\|KHG23422.1\|	2.7e-56	69.3	Photosystem I reaction center ...	[more]

BLAST of Spo02453.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QH63_SPIOL	1.3e-86	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CA99_BETVU	6.5e-73	84.7	Uncharacterized protein OS=Bet...	[more]
A0A061DJ27_THECC	7.7e-58	69.3	Photosystem I reaction center ...	[more]
A0A0D2NXA0_GOSRA	1.5e-56	69.3	Uncharacterized protein OS=Gos...	[more]
A0A0B0PER3_GOSAR	1.9e-56	69.3	Photosystem I reaction center ...	[more]

BLAST of Spo02453.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
PSAN_ARATH	4.8e-53	66.2	Photosystem I reaction center ...	[more]
PSAN_HORVU	7.7e-43	77.0	Photosystem I reaction center ...	[more]
PSAN_MAIZE	6.1e-40	81.3	Photosystem I reaction center ...	[more]
PSAN_VOLCA	1.4e-23	55.4	Photosystem I reaction center ...	[more]

BLAST of Spo02453.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G64040.2	1.6e-35	60.9	photosystem I reaction center ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	GENE3D	4.10.1190.10		coord: 86..170 score: 4.9
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 46..170 score: 3.9
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 2..170 score: 1.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0015979	photosynthesis
biological_process	GO:0008643	carbohydrate transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0005351	carbohydrate:proton symporter activity
molecular_function	GO:0005516	calmodulin binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10537	0.81	Barchart \| Table
Spo10529	0.81	Barchart \| Table
Spo17046	0.80	Barchart \| Table
Spo19113	0.77	Barchart \| Table
Spo16821	0.77	Barchart \| Table
Spo07501	0.76	Barchart \| Table
Spo03024	0.75	Barchart \| Table
Spo09669	0.73	Barchart \| Table
Spo25138	0.73	Barchart \| Table
Spo00175	0.72	Barchart \| Table
Spo12202	0.71	Barchart \| Table
Spo21067	0.71	Barchart \| Table
Spo20441	0.70	Barchart \| Table
Spo22821	0.70	Barchart \| Table
Spo10927	0.69	Barchart \| Table
Spo04174	0.69	Barchart \| Table
Spo23714	0.68	Barchart \| Table
Spo06031	0.66	Barchart \| Table
Spo22857	0.66	Barchart \| Table
Spo01714	0.66	Barchart \| Table
Spo06294	0.65	Barchart \| Table