Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGCAACTCCTTTACCCTCGTCTTTGTGCATCTATAAAAACCCCTTTACTAAACTAAAGCAGTTCTCATCGCATATTTCCGCTCTCTCGACTCTTCCCTCTGCCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACAACTCTCGCAGACAGTGAACAATGGCGTCAGTAGATCCAGAGGTCAGAGACGAAGAGCACGTTCCCGCCGAAGAAGAAGATACCGGAGCCCAAATTGCTCCCATCGTTAGGCTCGAAGAGGTCGCAGTCACCACTGGTGAAGAAGACGAAGATGCCCTCCTCGATCTGTACCTTCTCTCTCCTTTTTATCACTTCCTTTTCTCACGATATTCCTTCTCAATCACTATTTTTTCTGCTTTTAAGTGATCTAATGCTTGAATTTTGCACCATGGTAGTTTTTGTTCTTTTACGTTTGCTAGGGTTTTGTGTTGCTCGGATTTTTGTGATTAGGCGTGTGTGTAATTGTTACTTCAAGCCCCTAATTTCTGTGCATTTGTTTGATTCCAATGCTAGAAAATTGCGACTATACTAGGGATTTTTAGTGTCTTTCTAGGGTTTTGTGATGATTCGATGTCAAATTGGGTGGCTTTGGAGTGTTATTTTCAAGTCCTAATTTTTTGCATTCAATAATTGCCTTCTTTTGGATTCTAGGGTTTGCGATGTTCATATTTTTTTTACTGACTGGGTGTTTATTGGAATTGTTATTAGAAAGGCGAAGCTATATAGATTTGATAAAGATGGGAATCAGTGGAAAGAGAGGGGTTCTGGTACTGTGAAGTTTCTCAAGCATAAGGTCAATGACAAAGTTCGATTGGTTATGCGGCAGTCTAAGACCCTTAAGATTTGCGCTAATCATCTGAGTATGTTTCTTCACTTCTATACCTTGTTAATTTGACGGGTTTTCTTTTTCTTGAACAATTGTGTGGAACGGCGAGAATTTATGAATTTTGTGTACTGTTTTTTAGTTATTGCTGGTATGACGGTTCAGGAGCATGCTGGGAATGAGAAATCTTGTGTGTGGCATGCTAGTGATTATGCCGATGGAGAGTTGAAGGAGGAGATGTTCTGCATCCGATTTGCATCTATTGACAGTGAGTGTTTTATTTTGTTTATTTACATTATTGCTCCAAGATTCTTGTTGTGGATTTTTTATTGGGATTGTTCACTTCACAAATGTGTGTTCCTTGATTGTGTCTGATACTCGTGATTATTGTAAATTGATGAATATGTTGTTTGTTAATATTGCTGCTTTAAAGCTCTTTTAACGAACTGAATCCGTTGAGAGGGATTATTTTCATGTATTGGTGGGTGTTTATTTCATTGTGATCTGTGATTTTCATATTCCTTTGTCATGTAAATTGAGATAAAGAAGGGCGTATGTTCCAAAATGCAGGTTGGACACGTATGGGTTACATAAGTCTCAAGCTTGTTGACATAATTAGTGATTTATAAACTTTAATTAGGGATTTTATTCTATTGATTGTATGATATGTTTTTTTTACGTTGATGAATATTTTATTAAGTTCATCCTCCTTTTGTACACCTTCATGGATTTTGTTCTATTGTCCTCATTCTTATGTCCCAAAGTTTACTGGATCAATTACTTGAAATTATTTAAATACCTTGATAGTGTGTATCTTAGGCTGTTAGCATTTGTTGTTATGGAAAATGTAGTGTCAACCTAGGGAAATGGGAAATCCAAGCTGTAAATGGGTGGGCAGCATTGCAACATCTTAAGAAAAGACAGTTTTGGGTGATTATCATGTTGGCAGGTTTATTTTTTGTTGTCTGTATTCCCTTTCTAATAGGTCAAATGGTCACTTTTTGGAAATTCTCTGAAGCTTGTTTGGGTTGTGATGGTTATGTGATTCTTTTGTGCCTTTTTTTGGGTGTGATGTGCCTCAAGCAGTGTATAAAAAAGCACAAAGCGCATTAAAGCGATATGAGTCCTAGAGCCTAAGCGCAAAGCGCAAGCCGCGCGCTTCATTGAAGTGAAGCGCACTTTTTAAGAATAAGGTTTTTTCTTTTACTATTATGCATATATATCTTACTAAAATAACTGCAAATATATATAAACATCAGATTTGCTTACAAAAATAAAGTACCTTTTGTTTTAACAAATATAAAGCATATAACATAGTGTTTATCAAGAAGCTAGGGCCGGCTGTTGTGGCTGTTGTCTTCTCCTTTTCTTTTGCACTCTTGGGCTACCTTTTATTGTTAAGGATTAATATAATAGGATGCGGTCAGTAGCACAATAACAACATATAAAAAAGATTTCAACGTCAAGTAATAATAATAAAAAAATAATTTCAATGAAGCGCCAAAAAGCGCGCTTCATACGCTCAGACCTAATTAAGCGCTTTTCCCTAGAGCCTTGCGCTTCAGTGCTTAGGCGCGATTTTTTAACATTGGCCTCAAGTATATTTAATACTTTGTATAAAAGTTTACCAATGGTGCATCGTAATTCAAACTCACCTTACCAGGTCAAGGTAAAGTGTTCTGCGACTTTTTGATAGTTTAGTTTAATATACCTTTTATATTGTGAACACTTCATGGCTGGTTGGGTTTCGCTATTTGGAGTGTAACTAAATTTGTGAATGGTGATGGTGGTGAGGTTCAGTCTTGCAAATGTCATAAGCAATCAATGCAGATATGCTAAATTAAACAGGCTTTGAATGCTTGCATTGTACAGTGCAAAGGAAATGTTTATACTAGTTGTACTGTCTTCCAATGTCTTCTAATAGTGGCAATAATGTCATGATAGGGTAGAGCTGTAACTTGACGTGGATATTCGAGAGGTATGATTTTTGTATTTGACTCTGAATGGTGATTTGGGCATTGGGTACTTCTAGGCTAGCAGCTGTGGGTAACAGTATTTTGATCTGGTAGAAGAAAATGTAATCCTTCCTTGGAAACAGAATCCTGCAGATTTTTGTTATAAGATTCCTGTGTTTTTGTATTTCTTGGTGCTATATTCGCTTGAAAAAAGAAGTTAAAGCGATAGAAATTATCCTTGATTTTGGATGTAATGTTTTGCTTTATTATGAGTTGGGGGAAAGTGTAACCTAAAACCTGATTCATTAGTTTTCTGGCTTTTTAATATTTTGAGGGGTCAACTGTTGGTAGTTAGCCCTATTCCGCAATTTTTGGGACTGACTATTGGAGTAAGAAGCTTAGAGAAAGTACTGTGTTAATTTACTTTGGTGGTTGTTTCTTTCTTTCTTGCTTGTTCTAGCTTTAATTTTGTGATAGGACTTGTCTGTTGTCGTGTAATTTAGTTACTTCAATCTACAATCACAGCTGGCCTAGTCTGAACTTTCCTCAACATTACCCGTTTATGATTATGGAATGTTAATGGGTACGTTGTATTGCTGGTATTGGTGCCTAGTAAAAGGGGAATGATGGTTATGTTAAAAGCTGACTTGTTACACATTGGTGATTTTTCTTGTATTTTAATATCATTATAATTATAATTACATCAATGTCTGTTATCAGATTGCAAAACCTTCATGGAGATGTTCCAAGAGGTAGCTGAATCACAAAAGCCACAAGAGGAGAATGAGGATGCATCTGCAACTGCTGAAGCTCTTGAGAAGCTAAATGTAGGAGAAGAGAAAAATAAGGACAAAGCTGTAGAGGAAGAATCTACTCCAGCAGAAACAGCAGCTTCTCCAGCAAAAGAAGCAGCTGCTTCAGCAGAGGCGACAGAAGCTGAGTCTAAAAAAGATGATGTGGAGAAGAAGGCTGAGGATTCTAGCGCTTGAATTTACGCATCTACCGCTGCCAAGTGTTTCAAGGCCTGGTAGCTGTCCTTTATTGCTCACAAATGTTTTGGTAGTAATTTTTTGAGTCGGTATTTATTCTTGGGACCAAACAGGTTGTCTTCTATTATAGTCTGCTGGTGCTTGGTCTTTGTCTTCTATCTGAGTGTTGAACGATTGCTGTTGTTTTCCATTTGGGTTTATGAGAGGTTTAGAAGGTGGTTTTTCCAGATATACTAAGATATGTACTGGGTGTAAGTCGGTGTGTTTTTGGGTCTGTCAAGTCTGCAATACTAAAATTTCTTACAAGAAAAAGGTTTTGGTTCAAGTTGGCCCATGATATCCTTTTATGTGTTACTTGTGTTCAACTCCCTCGGTCTATTTTTGGTCTTTATGTTTGATATTTTACACGCGTTTTAACGACTAATTAATGTGTATTGAGATTTTTTTTATTTTTTTTATTTAAACAAGACATGTTATTTATATTGTTCATGAGAGATGAAATGACCTAAATAATTTGATTGATTAAAATAATCATTGGACATAAATTTTGATAGAACTAGCATAGGACACGTGCCATGCACGGTAATCCAAAATTATTGGCATGTTAA TTGCAACTCCTTTACCCTCGTCTTTGTGCATCTATAAAAACCCCTTTACTAAACTAAAGCAGTTCTCATCGCATATTTCCGCTCTCTCGACTCTTCCCTCTGCCGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACAACTCTCGCAGACAGTGAACAATGGCGTCAGTAGATCCAGAGGTCAGAGACGAAGAGCACGTTCCCGCCGAAGAAGAAGATACCGGAGCCCAAATTGCTCCCATCGTTAGGCTCGAAGAGGTCGCAGTCACCACTGGTGAAGAAGACGAAGATGCCCTCCTCGATCTAAAGGCGAAGCTATATAGATTTGATAAAGATGGGAATCAGTGGAAAGAGAGGGGTTCTGGTACTGTGAAGTTTCTCAAGCATAAGGTCAATGACAAAGTTCGATTGGTTATGCGGCAGTCTAAGACCCTTAAGATTTGCGCTAATCATCTGATTATTGCTGGTATGACGGTTCAGGAGCATGCTGGGAATGAGAAATCTTGTGTGTGGCATGCTAGTGATTATGCCGATGGAGAGTTGAAGGAGGAGATGTTCTGCATCCGATTTGCATCTATTGACAATTGCAAAACCTTCATGGAGATGTTCCAAGAGGTAGCTGAATCACAAAAGCCACAAGAGGAGAATGAGGATGCATCTGCAACTGCTGAAGCTCTTGAGAAGCTAAATGTAGGAGAAGAGAAAAATAAGGACAAAGCTGTAGAGGAAGAATCTACTCCAGCAGAAACAGCAGCTTCTCCAGCAAAAGAAGCAGCTGCTTCAGCAGAGGCGACAGAAGCTGAGTCTAAAAAAGATGATGTGGAGAAGAAGGCTGAGGATTCTAGCGCTTGAATTTACGCATCTACCGCTGCCAAGTGTTTCAAGGCCTGGTAGCTGTCCTTTATTGCTCACAAATGTTTTGGTAGTAATTTTTTGAGTCGGTATTTATTCTTGGGACCAAACAGGTTGTCTTCTATTATAGTCTGCTGGTGCTTGGTCTTTGTCTTCTATCTGAGTGTTGAACGATTGCTGTTGTTTTCCATTTGGGTTTATGAGAGGTTTAGAAGGTGGTTTTTCCAGATATACTAAGATATGTACTGGGTGTAAGTCGGTGTGTTTTTGGGTCTGTCAAGTCTGCAATACTAAAATTTCTTACAAGAAAAAGGTTTTGGTTCAAGTTGGCCCATGATATCCTTTTATGTGTTACTTGTGTTCAACTCCCTCGGTCTATTTTTGGTCTTTATGTTTGATATTTTACACGCGTTTTAACGACTAATTAATGTGTATTGAGATTTTTTTTATTTTTTTTATTTAAACAAGACATGTTATTTATATTGTTCATGAGAGATGAAATGACCTAAATAATTTGATTGATTAAAATAATCATTGGACATAAATTTTGATAGAACTAGCATAGGACACGTGCCATGCACGGTAATCCAAAATTATTGGCATGTTAA ATGGCGTCAGTAGATCCAGAGGTCAGAGACGAAGAGCACGTTCCCGCCGAAGAAGAAGATACCGGAGCCCAAATTGCTCCCATCGTTAGGCTCGAAGAGGTCGCAGTCACCACTGGTGAAGAAGACGAAGATGCCCTCCTCGATCTAAAGGCGAAGCTATATAGATTTGATAAAGATGGGAATCAGTGGAAAGAGAGGGGTTCTGGTACTGTGAAGTTTCTCAAGCATAAGGTCAATGACAAAGTTCGATTGGTTATGCGGCAGTCTAAGACCCTTAAGATTTGCGCTAATCATCTGATTATTGCTGGTATGACGGTTCAGGAGCATGCTGGGAATGAGAAATCTTGTGTGTGGCATGCTAGTGATTATGCCGATGGAGAGTTGAAGGAGGAGATGTTCTGCATCCGATTTGCATCTATTGACAATTGCAAAACCTTCATGGAGATGTTCCAAGAGGTAGCTGAATCACAAAAGCCACAAGAGGAGAATGAGGATGCATCTGCAACTGCTGAAGCTCTTGAGAAGCTAAATGTAGGAGAAGAGAAAAATAAGGACAAAGCTGTAGAGGAAGAATCTACTCCAGCAGAAACAGCAGCTTCTCCAGCAAAAGAAGCAGCTGCTTCAGCAGAGGCGACAGAAGCTGAGTCTAAAAAAGATGATGTGGAGAAGAAGGCTGAGGATTCTAGCGCTTGA MASVDPEVRDEEHVPAEEEDTGAQIAPIVRLEEVAVTTGEEDEDALLDLKAKLYRFDKDGNQWKERGSGTVKFLKHKVNDKVRLVMRQSKTLKICANHLIIAGMTVQEHAGNEKSCVWHASDYADGELKEEMFCIRFASIDNCKTFMEMFQEVAESQKPQEENEDASATAEALEKLNVGEEKNKDKAVEEESTPAETAASPAKEAAASAEATEAESKKDDVEKKAEDSSA Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo02449.1 vs. NCBI nr
Match: gi|902037594|gb|KNA02657.1| (hypothetical protein SOVF_216600 [Spinacia oleracea]) HSP 1 Score: 428.7 bits (1101), Expect = 6.400e-117 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Spo02449.1 vs. NCBI nr
Match: gi|731355927|ref|XP_010689400.1| (PREDICTED: ran-binding protein 1 homolog a-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 366.3 bits (939), Expect = 3.900e-98 Identity = 196/229 (85.59%), Postives = 210/229 (91.70%), Query Frame = 1
BLAST of Spo02449.1 vs. NCBI nr
Match: gi|224055337|ref|XP_002298487.1| (RAN BINDING protein 1 [Populus trichocarpa]) HSP 1 Score: 289.7 bits (740), Expect = 4.600e-75 Identity = 154/223 (69.06%), Postives = 185/223 (82.96%), Query Frame = 1
BLAST of Spo02449.1 vs. NCBI nr
Match: gi|743835081|ref|XP_011024929.1| (PREDICTED: ran-binding protein 1 homolog a-like [Populus euphratica]) HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74 Identity = 155/223 (69.51%), Postives = 185/223 (82.96%), Query Frame = 1
BLAST of Spo02449.1 vs. NCBI nr
Match: gi|728850847|gb|KHG30290.1| (Ran-binding 1 c -like protein [Gossypium arboreum]) HSP 1 Score: 287.7 bits (735), Expect = 1.800e-74 Identity = 152/214 (71.03%), Postives = 181/214 (84.58%), Query Frame = 1
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6K5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216600 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 4.400e-117 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 1
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EGM8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207190 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 2.700e-98 Identity = 196/229 (85.59%), Postives = 210/229 (91.70%), Query Frame = 1
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Match: A9P8P1_POPTR (RAN BINDING protein 1 OS=Populus trichocarpa GN=POPTR_0001s28550g PE=2 SV=1) HSP 1 Score: 289.7 bits (740), Expect = 3.200e-75 Identity = 154/223 (69.06%), Postives = 185/223 (82.96%), Query Frame = 1
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PZ46_GOSAR (Ran-binding 1 c-like protein OS=Gossypium arboreum GN=F383_13952 PE=4 SV=1) HSP 1 Score: 287.7 bits (735), Expect = 1.200e-74 Identity = 152/214 (71.03%), Postives = 181/214 (84.58%), Query Frame = 1
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Match: A0A0D2VKQ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G269700 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.600e-74 Identity = 153/216 (70.83%), Postives = 182/216 (84.26%), Query Frame = 1
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Match: RBP1A_ARATH (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A PE=1 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 2.400e-71 Identity = 152/231 (65.80%), Postives = 184/231 (79.65%), Query Frame = 1
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Match: RBP1B_ARATH (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2) HSP 1 Score: 266.5 bits (680), Expect = 2.600e-70 Identity = 141/213 (66.20%), Postives = 177/213 (83.10%), Query Frame = 1
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Match: RBP1C_ARATH (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C PE=2 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 4.200e-68 Identity = 141/219 (64.38%), Postives = 173/219 (79.00%), Query Frame = 1
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Match: RANG_SCHPO (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 5.500e-28 Identity = 71/159 (44.65%), Postives = 96/159 (60.38%), Query Frame = 1
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Match: YRB1_YEAST (Ran-specific GTPase-activating protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 5.500e-28 Identity = 70/163 (42.94%), Postives = 99/163 (60.74%), Query Frame = 1
BLAST of Spo02449.1 vs. TAIR (Arabidopsis)
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein) HSP 1 Score: 270.0 bits (689), Expect = 1.300e-72 Identity = 152/231 (65.80%), Postives = 184/231 (79.65%), Query Frame = 1
BLAST of Spo02449.1 vs. TAIR (Arabidopsis)
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein) HSP 1 Score: 266.5 bits (680), Expect = 1.500e-71 Identity = 141/213 (66.20%), Postives = 177/213 (83.10%), Query Frame = 1
BLAST of Spo02449.1 vs. TAIR (Arabidopsis)
Match: AT5G58590.1 (RAN binding protein 1) HSP 1 Score: 259.2 bits (661), Expect = 2.400e-69 Identity = 141/219 (64.38%), Postives = 173/219 (79.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo02449.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo02449.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo02449.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo02449.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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