Spo02373 (gene)

Overview
NameSpo02373
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase (2.7.7.6)
Locationchr5 : 2741217 .. 2744823 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTTGAATCCTCGAAGAATTGAAATAGAGAGAGAAGTTTGTGAAGGAAACAGGATCGAATCCTCTATGGCAGTTGCAGTAAGCAGATTCTACAGCAGCTGTACATGATGGTGATGCAGAAGCAGCAACAAGATGGTGAGGGGGCATTTTTGTAATTGATTAGTGATTACTTATTTTTCGGACAGTAAAAACAGAACAAAGTGCGAGCATATCCATTGATATGGAGTGTTATCTGCATAGATTCATATACGCGTTACTGTTATTAATGTATACGTGTGTTCTTTTCTCTTCTTTGAGCACTTATGAATTGTGTAGAATGAAGTTGTAGGAACACATTTTTTGACACAGAAGTGTCCTGTTATAAGAATGTGAAGTTTGTCTTGTCTGAACTTTCATTGATTTATAGCAAATCCTGTGTTATTACATTGTATAGTGCAAGGATGAATATGAACATTGTATGAAGTATACTGTAATAAAGAATGTGAAGGTTGTCTGAACTTTCATTGATTTGTTGCAAATCCTGTGTTATATTACTTTGTTTTGTGTAAGGATGAATTCATTGGACAATGTGCTTTGTACTTTCTCTGTTTTTCACTTGCAATTTGATACTCCCTCTGTTTCTTTTTGTTTGTTACGTATTCCTTTTAGGGTGTTTCACAATGTTTATTACATGGGAGAATATTTCATTTTATAAACTTATTATATTGTCATTTTTTGTGCCAACTTTTAATTTTAATTGGTCCAATTTTTTCAATTCATTAAATTTCTTTACAATTTCCCAAGTATGTTAAGTTAACAATTTGTGTGCTTTGGTTCATTTTGATAAATAAAACAATCTTATTGGTTGTTGTAATGATTAATGGATTGAGGTTTTGCTTGGGTTTATTTTTTTAATAAAAAAGATAAAGAATCTTTATTATACGTTAATAAACGTGCAAAAGTCTAAACGTAACAAACAAAAAGAAACGGAGGGAATACTATTAATGGTTAAAGATGTGCATTGACAAACGTAAAACTCCAAATAGTGCAATTATAAAAATGATGATGCATTTTCTTTGTTTCTTTTGCTGATGGATAACATGGATTGGTAATCGAACCGCTTAGTTTAATAGAACGACCTGGTTAATCGACCATGGTAACACCCCTAGTCTCATTATTTAATGCTTCACCAATTCTCTTTTAATTACGACATTATGACAAAAACAAGTTATGATACTTCGTATTATTTATCTAAATTTATTTTGGTTGAATATTGAAACAATTTCTAGTATGTTACGAGTATTATTTTAGTTTACTTTTAGGAAACAAGTTTAAGTTTGTTAAGAAAAAATAAACTCCTGTAAAATAAGTTTCAAAATGATTCCTAATTGTACATTAATACTACCGTTATTAACGTATTAGATAATATAAATTCAGATAAAATAAATCAAATAAACAACAGACGCGAGTACATGGTAACACGTGGCATCTTTCTTTTAAGTACTCCGTAGATTTTCTGATTTGAGAAGACAAACAATTGAACAAACAAAACAAAGGTTGTTTCAGTTAAAACAACAATGGAGGTTTCATGTTTTCCAGCCACATCAAAAGGAACTCACTCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCCTCTAAATTTTGTTACAAGGCTGAGATTTTATTTTGTGTATGTGGCAGATCATGGTTAAGCGCCAGAGAACAGCATTTCCTCCAAATTTTGTCCACTCTCTTGATGGTTCCCACATGATGATGACTGCCGTTGCCTGCAAACAAGCTGGCATGTACTTTGCAGGTCTGTTTTGTATGCTCAACTTGGATCATCCTATCTCCAGGGGATTGTTGCTTATCTCATTCTAACTATTTGGTCCGCTCACTTGACTTCTATAGGTGTTCATGATTCATATTGGACACATGCATGTGATGTTGACGAAATGAACCGGATATTAAGGGTGAAGTTTGTTGAGCTCTATGAACAACCAATACTTGAGAATGTAAGTATTTTTATATGATGAGTACTCTTTTGGTCCATGAAGTTTTGTTTATCCACTAAAACCTTTTGTTTCTTTTTCTCCGTTTATTTTGGGTCTGTTTGAGCTGGAAAAGTCTCTTTTTTGGAGACTCAACTTTTTCCTTGCCTTAGTACTGTACTAAATATAAACTCTACACAATTAGGGTTCAACACACATGAACCCCTTGAAATTGAGCTTAGGCCGAGCTTTAGGCTCTATTTTGCTCACCTTATTTCACTTATTTCAGGAAAAATAAGTTTAGGAAAAATAAGGGTTGACCAAGTACAATTTATAACTAAAGTTTTGATAAGTTCAGGAAAAATAAGTGAAAATCAGGTGAATAGAACGCACCTTTGGTTCATTGCAGCTTACTGTAGTTTATTTGCATTCGTGACATATCTCTAACTTACACGGGATATACATGTGCAGTTGTTGGAAAGCTTTCAAGAATCATTCCCGACATTACAATTTCCTCCTCTCCCTGAACGTGGAGATTTTGACTTACGAGAAGTTCTGCAGTCTACCTATTTCTTCAATTAGTTTGACTGCATTATTAGTATATAGCCTTCACTTAATCATACACAAAAGAAGAAGATGATCCAATAAGATAATTTCTCGGTATCCATGGTTCATTAGCATGTGAGAAAAGCATTGGATTCCTACCCCTCCCGAAAGTGGAGATGGCAAACAGGAAAAATTTCTGTGTGGACCATCTGCCTGCACATTTTATGATGATGCAAATACATAGCCATTTGCCTGCACATTGGATCAGAGTTCCCTCCGTGTTTTATTGGTTGGGATACCTGCCTTTATGAACTTGAACCCTCGAAGAAGAAGAGAAATAGAGAGAAATTTGTGAACTTGAACCCTCGAAGAAAAAGAAGAGAAATAGAGAGAAATTTATGAACTTGAATCCTCGAAGAATTGAAATAGAGAGAGAAGTTTGTGAAGGAAACAGGATCGAATCCTCTATGGCAGTTGCAGTAAGCAGATTCTACAGCAGCTGTACATGATGGTGATGCAGAAGCAGCAACAAGATGGTGAGGGGGCATTTTTGTAATTGATTAGTGATTACTTATTTTTCGGACAGTAAAAACAGAACAAAGTGCGAGCATATCCATTGATATGGAGTGTTATCTGCATAGATTCATATACGCGTTACTGTTATTAATGTATACGTGTGTTCTTTTCTCTTCTTTGAGCACTTATGAATTGTGTAGAATGAAGTTGTAGGAACACATTTTTTGACACAGAAGTGTCCTGTTATAAGAATGTGAAGTTTGTCTTGTCTGAACTTTCATTGATTTATAGCAAATCCTGTGTTATTACATTGTATAGTGCAAGGATGAATATGAACATTGTATGAAGTATACTGTAATAAAGAATGTGAAGGTTGTCTGAACTTTCATTGATTTGTTGCAAATCCTGTGTTATATTACTTTGTTTTGTGTAAGGATGAATTCATTGGACAATGTGCTTTGTACTTTCTCTGTTTTTCACTTGCAATTTGATACTCCCTCTG

mRNA sequence

ATGAACTTGAATCCTCGAAGAATTGAAATAGAGAGAGAAGTTTGTGAAGGAAACAGGATCGAATCCTCTATGGCAGTTGCAATCATGGTTAAGCGCCAGAGAACAGCATTTCCTCCAAATTTTGTCCACTCTCTTGATGGTTCCCACATGATGATGACTGCCGTTGCCTGCAAACAAGCTGGCATGTACTTTGCAGGTGTTCATGATTCATATTGGACACATGCATGTGATGTTGACGAAATGAACCGGATATTAAGGGTGAAGTTTGTTGAGCTCTATGAACAACCAATACTTGAGAATTTGTTGGAAAGCTTTCAAGAATCATTCCCGACATTACAATTTCCTCCTCTCCCTGAACGTGGAGATTTTGACTTACGAGAAGTTCTGCAGTCTACCTATTTCTTCAATTAGTTTGACTGCATTATTAGTATATAGCCTTCACTTAATCATACACAAAAGAAGAAGATGATCCAATAAGATAATTTCTCGGTATCCATGGTTCATTAGCATGTGAGAAAAGCATTGGATTCCTACCCCTCCCGAAAGTGGAGATGGCAAACAGGAAAAATTTCTGTGTGGACCATCTGCCTGCACATTTTATGATGATGCAAATACATAGCCATTTGCCTGCACATTGGATCAGAGTTCCCTCCGTGTTTTATTGGTTGGGATACCTGCCTTTATGAACTTGAACCCTCGAAGAAGAAGAGAAATAGAGAGAAATTTGTGAACTTGAACCCTCGAAGAAAAAGAAGAGAAATAGAGAGAAATTTATGAACTTGAATCCTCGAAGAATTGAAATAGAGAGAGAAGTTTGTGAAGGAAACAGGATCGAATCCTCTATGGCAGTTGCAGTAAGCAGATTCTACAGCAGCTGTACATGATGGTGATGCAGAAGCAGCAACAAGATGGTGAGGGGGCATTTTTGTAATTGATTAGTGATTACTTATTTTTCGGACAGTAAAAACAGAACAAAGTGCGAGCATATCCATTGATATGGAGTGTTATCTGCATAGATTCATATACGCGTTACTGTTATTAATGTATACGTGTGTTCTTTTCTCTTCTTTGAGCACTTATGAATTGTGTAGAATGAAGTTGTAGGAACACATTTTTTGACACAGAAGTGTCCTGTTATAAGAATGTGAAGTTTGTCTTGTCTGAACTTTCATTGATTTATAGCAAATCCTGTGTTATTACATTGTATAGTGCAAGGATGAATATGAACATTGTATGAAGTATACTGTAATAAAGAATGTGAAGGTTGTCTGAACTTTCATTGATTTGTTGCAAATCCTGTGTTATATTACTTTGTTTTGTGTAAGGATGAATTCATTGGACAATGTGCTTTGTACTTTCTCTGTTTTTCACTTGCAATTTGATACTCCCTCTG

Coding sequence (CDS)

ATGAACTTGAATCCTCGAAGAATTGAAATAGAGAGAGAAGTTTGTGAAGGAAACAGGATCGAATCCTCTATGGCAGTTGCAATCATGGTTAAGCGCCAGAGAACAGCATTTCCTCCAAATTTTGTCCACTCTCTTGATGGTTCCCACATGATGATGACTGCCGTTGCCTGCAAACAAGCTGGCATGTACTTTGCAGGTGTTCATGATTCATATTGGACACATGCATGTGATGTTGACGAAATGAACCGGATATTAAGGGTGAAGTTTGTTGAGCTCTATGAACAACCAATACTTGAGAATTTGTTGGAAAGCTTTCAAGAATCATTCCCGACATTACAATTTCCTCCTCTCCCTGAACGTGGAGATTTTGACTTACGAGAAGTTCTGCAGTCTACCTATTTCTTCAATTAG

Protein sequence

MNLNPRRIEIEREVCEGNRIESSMAVAIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRVKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02373.1Spo02373.1mRNA


Homology
[Close]
BLAST of Spo02373.1 vs. NCBI nr
Match: gi|902231101|gb|KNA22118.1| (hypothetical protein SOVF_036990 [Spinacia oleracea])

HSP 1 Score: 229.6 bits (584), Expect = 3.400e-57
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV
Sbjct: 878 IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 937

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLR+VLQSTYFFN
Sbjct: 938 KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLRDVLQSTYFFN 986
[Close]
BLAST of Spo02373.1 vs. NCBI nr
Match: gi|1865721|emb|CAA69305.1| (mitochondrial single-subunit DNA-dependent RNA polymerase [Chenopodium album])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-52
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +M KRQRTAFPPNFVHSLDGSHMMMTA+ACK+AGM FAGVHDSYWTHACDVD+MN+ILR 
Sbjct: 880 VMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFAGVHDSYWTHACDVDKMNQILRE 939

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVL+S YFFN
Sbjct: 940 KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLESPYFFN 988
[Close]
BLAST of Spo02373.1 vs. NCBI nr
Match: gi|743797885|ref|XP_011009271.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 1B, mitochondrial [Populus euphratica])

HSP 1 Score: 213.4 bits (542), Expect = 2.500e-52
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +MVKRQRTAFPPNFVHSLDGSHMMMTAVACK+AG+ FAGVHDSYWTHACDVDEMNRILR 
Sbjct: 884 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILRE 943

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYE PILENLLESFQ SFP L+FPPLPERGDFDLR+VLQSTYFFN
Sbjct: 944 KFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 992
[Close]
BLAST of Spo02373.1 vs. NCBI nr
Match: gi|566190843|ref|XP_002315996.2| (DNA-directed RNA polymerase family protein [Populus trichocarpa])

HSP 1 Score: 213.4 bits (542), Expect = 2.500e-52
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +MVKRQRTAFPPNFVHSLDGSHMMMTAVACK+AG+ FAGVHDSYWTHACDVDEMNRILR 
Sbjct: 754 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILRE 813

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYE PILENLLESFQ SFP L+FPPLPERGDFDLR+VLQSTYFFN
Sbjct: 814 KFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862
[Close]
BLAST of Spo02373.1 vs. NCBI nr
Match: gi|731340034|ref|XP_010681166.1| (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 212.2 bits (539), Expect = 5.500e-52
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           IMVKRQRTAFPPNFVHSLDGSHMMMTA+ACKQAG+ FAGVHDSYWTHAC+VDEMNRILR 
Sbjct: 878 IMVKRQRTAFPPNFVHSLDGSHMMMTAIACKQAGLNFAGVHDSYWTHACNVDEMNRILRE 937

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLL+SFQ+SFP L+FPPLPERGDFDLREVL+S YFFN
Sbjct: 938 KFVELYEQPILENLLKSFQDSFPALEFPPLPERGDFDLREVLESPYFFN 986
[Close]
BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRN7_SPIOL (DNA-directed RNA polymerase OS=Spinacia oleracea GN=SOVF_036990 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.300e-57
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV
Sbjct: 878 IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 937

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLR+VLQSTYFFN
Sbjct: 938 KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLRDVLQSTYFFN 986
[Close]
BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Match: P93661_CHEAL (DNA-directed RNA polymerase OS=Chenopodium album PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.800e-53
Identity = 99/109 (90.83%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +M KRQRTAFPPNFVHSLDGSHMMMTA+ACK+AGM FAGVHDSYWTHACDVD+MN+ILR 
Sbjct: 880 VMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFAGVHDSYWTHACDVDKMNQILRE 939

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVL+S YFFN
Sbjct: 940 KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLESPYFFN 988
[Close]
BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Match: B9HWT3_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTR_0010s14650g PE=3 SV=2)

HSP 1 Score: 213.4 bits (542), Expect = 1.700e-52
Identity = 99/109 (90.83%), Postives = 104/109 (95.41%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +MVKRQRTAFPPNFVHSLDGSHMMMTAVACK+AG+ FAGVHDSYWTHACDVDEMNRILR 
Sbjct: 754 VMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILRE 813

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYE PILENLLESFQ SFP L+FPPLPERGDFDLR+VLQSTYFFN
Sbjct: 814 KFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862
[Close]
BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C909_BETVU (DNA-directed RNA polymerase OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140140 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.900e-52
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           IMVKRQRTAFPPNFVHSLDGSHMMMTA+ACKQAG+ FAGVHDSYWTHAC+VDEMNRILR 
Sbjct: 808 IMVKRQRTAFPPNFVHSLDGSHMMMTAIACKQAGLNFAGVHDSYWTHACNVDEMNRILRE 867

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYEQPILENLL+SFQ+SFP L+FPPLPERGDFDLREVL+S YFFN
Sbjct: 868 KFVELYEQPILENLLKSFQDSFPALEFPPLPERGDFDLREVLESPYFFN 916
[Close]
BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Match: A5AW22_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011556 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.000e-52
Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = 1 

		  

Query: 20  IESSMAVAIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVD 79
           I + +   IMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK+AG+ FAGVHDSYWTHACDVD
Sbjct: 52  ISTYLIFLIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVD 111

Query: 80  EMNRILRVKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           EMNRILR KFV+LYE PILENLLESFQ+SFP L+FPPLPERGDFDLREVL+S YFFN
Sbjct: 112 EMNRILREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 168
[Close]
BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Match: RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2)

HSP 1 Score: 208.0 bits (528), Expect = 6.500e-53
Identity = 94/109 (86.24%), Postives = 104/109 (95.41%), Query Frame = 1 

		  

Query: 28   IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
            +MVKRQRTAFPPNFVHSLDGSHMMMTA+ACK++G+ FAGVHDSYWTHACDVD+MN+ILR 
Sbjct: 894  VMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILRE 953

Query: 88   KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
            KFVELY+ PILENLLESFQ+SFP LQFPPLPERGDFDLREVL+S YFFN
Sbjct: 954  KFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
[Close]
BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Match: RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.500e-52
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1 

		  

Query: 28   IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
            +MVKRQRTAFPPNFVHSLDGSHMMMTA+ACK++G+ FAGVHDSYWTHA DVD+MN+ILR 
Sbjct: 894  VMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILRE 953

Query: 88   KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
            KFVELY+ PILENLLESFQ+SFP LQFPPLPERGDFDLREVL+S YFFN
Sbjct: 954  KFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
[Close]
BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Match: RPO1A_TOBAC (DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum GN=RPOT1-SYL PE=3 SV=2)

HSP 1 Score: 204.1 bits (518), Expect = 9.500e-52
Identity = 93/109 (85.32%), Postives = 103/109 (94.50%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +MVKRQRTAFPPNFVHSLDGSHMMMTA+ACK++G+ FAGVHDSYWTHA DVD+MN+ILR 
Sbjct: 47  VMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILRE 106

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELY+ PILENLLESFQ+SFP LQFPPLPERGDFDLREVL+S YFFN
Sbjct: 107 KFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
[Close]
BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Match: RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 202.2 bits (513), Expect = 3.600e-51
Identity = 92/109 (84.40%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 28   IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
            +MVKRQRTAFPPNF+HSLDGSHMMMTAVAC++AG+ FAGVHDSYWTHACDVD++NRILR 
Sbjct: 913  VMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILRE 972

Query: 88   KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
            KFVELYE PILE LLESFQ S+PTL FPPLPERGDFDLR+VL+S YFFN
Sbjct: 973  KFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021
[Close]
BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Match: RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 6.100e-51
Identity = 91/109 (83.49%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 28   IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
            +MVKRQRTAFPPNF+HSLDGSHMMMTAVAC++AG+ FAGVHDSYWTHACDVD++NRILR 
Sbjct: 912  VMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILRE 971

Query: 88   KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
            KFVELYE PILE LLESFQ S+PTL FPPLPERGDFD+R+VL+S YFFN
Sbjct: 972  KFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020
[Close]
BLAST of Spo02373.1 vs. TAIR (Arabidopsis)
Match: AT1G68990.2 (male gametophyte defective 3)

HSP 1 Score: 194.1 bits (492), Expect = 5.500e-50
Identity = 88/109 (80.73%), Postives = 99/109 (90.83%), Query Frame = 1 

		  

Query: 28  IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
           +M +RQ TAF PNF+HSLDGSHMMMTAVAC +AG+ FAGVHDS+WTHACDVD MN ILR 
Sbjct: 875 VMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILRE 934

Query: 88  KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFFN 137
           KFVELYE+PILENLLESFQ+SFP + FPPLPERGDFDLR+VL+STYFFN
Sbjct: 935 KFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 983
[Close]
BLAST of Spo02373.1 vs. TAIR (Arabidopsis)
Match: AT2G24120.1 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 192.2 bits (487), Expect = 2.100e-49
Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1 

		  

Query: 16  EGNRIESSMAVAIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHA 75
           EGN ++        V++QRTAFPPNFVHSLDG+HMMMTAVAC++AG+ FAGVHDSYWTHA
Sbjct: 881 EGNTVD--------VRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHA 940

Query: 76  CDVDEMNRILRVKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQSTYFF 135
           CDVD MNRILR KFVELY  PILE+LL+SFQES+P L FPP+P+RGDFDL+EVL+S YFF
Sbjct: 941 CDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFF 993

Query: 136 N 137
           N
Sbjct: 1001 N 993
[Close]
BLAST of Spo02373.1 vs. TAIR (Arabidopsis)
Match: AT5G15700.2 (DNA/RNA polymerases superfamily protein)

HSP 1 Score: 180.6 bits (457), Expect = 6.300e-46
Identity = 82/105 (78.10%), Postives = 95/105 (90.48%), Query Frame = 1 

		  

Query: 28   IMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMYFAGVHDSYWTHACDVDEMNRILRV 87
            ++V+RQRTAFPPNF+HSLDGSHMMMTAVACK+AG+ FAGVHDS+WTHACDVD++N ILR 
Sbjct: 903  VIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILRE 962

Query: 88   KFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLQST 133
            KFVELY QPILENLLESF++SFP L FPPLPERGD DL+  + ST
Sbjct: 963  KFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVNIVST 1007
The following BLAST results are available for this feature:
BLAST of Spo02373.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902231101|gb|KNA22118.1|3.4e-5799.0hypothetical protein SOVF_0369... [more]
gi|1865721|emb|CAA69305.1|1.1e-5290.8mitochondrial single-subunit D... [more]
gi|743797885|ref|XP_011009271.1|2.5e-5290.8PREDICTED: LOW QUALITY PROTEIN... [more]
gi|566190843|ref|XP_002315996.2|2.5e-5290.8DNA-directed RNA polymerase fa... [more]
gi|731340034|ref|XP_010681166.1|5.5e-5289.9PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo02373.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RRN7_SPIOL2.3e-5799.0DNA-directed RNA polymerase OS... [more]
P93661_CHEAL7.8e-5390.8DNA-directed RNA polymerase OS... [more]
B9HWT3_POPTR1.7e-5290.8DNA-directed RNA polymerase OS... [more]
A0A0J8C909_BETVU3.9e-5289.9DNA-directed RNA polymerase OS... [more]
A5AW22_VITVI5.0e-5283.7Putative uncharacterized prote... [more]
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BLAST of Spo02373.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RPO1B_TOBAC6.5e-5386.2DNA-directed RNA polymerase 1B... [more]
RPOT1_NICSY9.5e-5285.3DNA-directed RNA polymerase 1,... [more]
RPO1A_TOBAC9.5e-5285.3DNA-directed RNA polymerase 1A... [more]
RPO2B_TOBAC3.6e-5184.4DNA-directed RNA polymerase 2B... [more]
RPOT2_NICSY6.1e-5183.4DNA-directed RNA polymerase 2,... [more]
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BLAST of Spo02373.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G68990.25.5e-5080.7male gametophyte defective 3[more]
AT2G24120.12.1e-4973.5DNA/RNA polymerases superfamil... [more]
AT5G15700.26.3e-4678.1DNA/RNA polymerases superfamil... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002092DNA-directed RNA polymerase, phage-typePANTHERPTHR10102DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIALcoord: 27..136
score: 2.4
IPR002092DNA-directed RNA polymerase, phage-typePFAMPF00940RNA_polcoord: 22..136
score: 2.5
NoneNo IPR availableGENE3D3.30.70.370coord: 44..125
score: 6.3
NoneNo IPR availablePANTHERPTHR10102:SF1DNA-DIRECTED RNA POLYMERASE 3, CHLOROPLASTICcoord: 27..136
score: 2.4
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 27..136
score: 3.65

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0006606 protein import into nucleus
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0001510 RNA methylation
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0006424 glutamyl-tRNA aminoacylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0009553 embryo sac development
biological_process GO:0006397 mRNA processing
biological_process GO:0006364 rRNA processing
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006457 protein folding
biological_process GO:0009408 response to heat
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0051301 cell division
biological_process GO:0016567 protein ubiquitination
biological_process GO:0048825 cotyledon development
biological_process GO:0019915 lipid storage
biological_process GO:0008152 metabolic process
biological_process GO:0009933 meristem structural organization
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0010162 seed dormancy process
biological_process GO:0009845 seed germination
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
cellular_component GO:0009332 glutamate-tRNA ligase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005829 cytosol
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0004818 glutamate-tRNA ligase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0051082 unfolded protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo023740.82Barchart | Table
Spo157970.77Barchart | Table
Spo175130.77Barchart | Table
Spo264520.76Barchart | Table
Spo105840.75Barchart | Table
Spo144510.74Barchart | Table
Spo044900.74Barchart | Table
Spo143670.74Barchart | Table
Spo154310.74Barchart | Table
Spo059410.74Barchart | Table
Spo175390.73Barchart | Table
Spo144060.73Barchart | Table
Spo209410.73Barchart | Table
Spo216460.73Barchart | Table
Spo146240.73Barchart | Table
Spo030530.73Barchart | Table
Spo219100.73Barchart | Table
Spo051370.73Barchart | Table
Spo184790.73Barchart | Table
Spo271040.72Barchart | Table
Spo030460.72Barchart | Table
Spo039640.72Barchart | Table
Spo051900.72Barchart | Table
Spo223730.72Barchart | Table
Spo064930.72Barchart | Table
Spo213870.72Barchart | Table
Spo202430.72Barchart | Table
Spo003420.72Barchart | Table
Spo132040.72Barchart | Table
Spo132410.72Barchart | Table
Spo111800.71Barchart | Table
Spo239310.71Barchart | Table
Spo103370.71Barchart | Table
Spo197610.71Barchart | Table
Spo197760.71Barchart | Table
Spo183930.71Barchart | Table
Spo251230.71Barchart | Table
Spo094260.71Barchart | Table
Spo052670.71Barchart | Table
Spo135090.71Barchart | Table
Spo052080.70Barchart | Table
Spo057260.70Barchart | Table
Spo032140.70Barchart | Table
Spo231650.70Barchart | Table
Spo219590.70Barchart | Table
Spo167100.70Barchart | Table
Spo030590.70Barchart | Table
Spo174610.70Barchart | Table
Spo210790.70Barchart | Table
Spo025030.70Barchart | Table
Spo189370.70Barchart | Table
Spo184880.70Barchart | Table
Spo109810.70Barchart | Table
Spo154070.70Barchart | Table
Spo270760.70Barchart | Table
Spo184800.70Barchart | Table
Spo127250.70Barchart | Table
Spo258410.70Barchart | Table
Spo045010.70Barchart | Table
Spo046990.70Barchart | Table
Spo254810.70Barchart | Table
Spo182930.69Barchart | Table
Spo068510.69Barchart | Table
Spo058910.69Barchart | Table
Spo270570.69Barchart | Table
Spo118330.69Barchart | Table
Spo021630.69Barchart | Table
Spo126100.69Barchart | Table
Spo087610.69Barchart | Table
Spo082850.69Barchart | Table
Spo195060.69Barchart | Table
Spo099590.69Barchart | Table
Spo027900.69Barchart | Table
Spo021810.69Barchart | Table
Spo271000.69Barchart | Table
Spo184190.69Barchart | Table
Spo269780.69Barchart | Table
Spo043500.69Barchart | Table
Spo110930.69Barchart | Table
Spo002630.68Barchart | Table
Spo010010.68Barchart | Table
Spo034130.68Barchart | Table
Spo038840.68Barchart | Table
Spo110720.68Barchart | Table
Spo111070.68Barchart | Table
Spo117560.68Barchart | Table
Spo131300.68Barchart | Table
Spo194990.68Barchart | Table
Spo234280.68Barchart | Table
Spo235130.68Barchart | Table
Spo248370.68Barchart | Table
Spo263300.68Barchart | Table
Spo047570.67Barchart | Table
Spo211960.67Barchart | Table
Spo241040.67Barchart | Table
Spo240470.67Barchart | Table
Spo108820.67Barchart | Table
Spo011710.67Barchart | Table
Spo217220.67Barchart | Table
Spo137290.67Barchart | Table
Spo064510.67Barchart | Table
Spo220490.67Barchart | Table
Spo170810.67Barchart | Table
Spo003700.67Barchart | Table
Spo006700.67Barchart | Table
Spo195190.67Barchart | Table
Spo228040.67Barchart | Table
Spo228600.67Barchart | Table
Spo097320.67Barchart | Table
Spo017130.67Barchart | Table
Spo167010.67Barchart | Table
Spo095630.67Barchart | Table
Spo118700.67Barchart | Table
Spo039140.67Barchart | Table
Spo178830.67Barchart | Table
Spo210220.67Barchart | Table
Spo090280.67Barchart | Table
Spo257490.67Barchart | Table
Spo154010.66Barchart | Table
Spo151340.66Barchart | Table
Spo148840.66Barchart | Table
Spo176820.66Barchart | Table
Spo130480.66Barchart | Table
Spo114340.66Barchart | Table
Spo011300.66Barchart | Table
Spo097380.66Barchart | Table
Spo199810.66Barchart | Table
Spo202950.66Barchart | Table
Spo094930.66Barchart | Table
Spo078590.66Barchart | Table
Spo216480.66Barchart | Table
Spo073130.66Barchart | Table
Spo061680.66Barchart | Table
Spo226610.66Barchart | Table
Spo234790.66Barchart | Table
Spo057320.66Barchart | Table
Spo239780.66Barchart | Table
Spo249390.66Barchart | Table
Spo050770.66Barchart | Table
Spo261960.66Barchart | Table
Spo272990.66Barchart | Table
Spo024710.66Barchart | Table
Spo156050.66Barchart | Table
Spo163940.66Barchart | Table
Spo164920.66Barchart | Table
Spo211520.65Barchart | Table
Spo211040.65Barchart | Table
Spo205150.65Barchart | Table
Spo061370.65Barchart | Table
Spo225250.65Barchart | Table
Spo108110.65Barchart | Table
Spo224740.65Barchart | Table
Spo128740.65Barchart | Table
Spo128090.65Barchart | Table
Spo216190.65Barchart | Table
Spo090270.65Barchart | Table
Spo271440.65Barchart | Table
Spo266320.65Barchart | Table
Spo097010.65Barchart | Table