Spo02216 (gene)

Overview
NameSpo02216
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMediator of RNA polymerase II transcription subunit 19
Locationchr5 : 4051253 .. 4053236 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATGTTGATTAATGGATTCTGAAGGCAAGAAGTTTGGAAGAGGTAAATCATTAAATTGGTCTCCATTAGTCTATAATTTTTTCCTGCTTACATTTTTGTTTAGAAACAAAAGTGTTGATCCCCACAAAAAATAAAAAGAAGCAAAAGCGTAAATAAAAACAATACCTGCAGCCACAGTGGGGTTACCACTCTAGATATGATCTTTACTTTGCTGGATGATGAAATTCTCATGTCTTTGTAATTGAGGAGTCTCTGTCATGACGTGACAACTTTTTTTCCGAGTAAATTCTCTAAAATTTCTGTGGGTTATGTAAATCAGAGTCACTTAGCCTGTGAATGCAACATAGCATCTTGTGCAGGGATGTCCGATGTCCCAAGAAACCCCCAGCATGTATAATGTCTTGTAAACTATGATCTGCTATAAGCTTTCAAGATAATAAAAGTGTTGATATTTTTCTAGTGAACTGTGTGCATATAAGTAACAGGCTATTATATTGTAGACCTGGATCCACCGTCTACCAATGGGTGTTTTGTATATACTACGGAATCCGTAATGGTTGGGGGTTGCAATGCTGAAGTATATTTGAAGAGATAAATGTGGCATTTTTCTTATGATGCTGTGATTCTATCCTTTTGCTGTTTGTTACTTACTATTTCTGCTGAATACTGATGTAATTTTGCTTTTCTATGTTTTCTTCTCCGCTTTTCTTGCTGCTATTTTTTTTCCAGGTCCGAGAGAGCTTACGGGTGCTGTTGATTTGATTACTCATTACAAGTTGTTACCACATCACGAGTTTTTCTGCAAAAAGTCACTTCCCGTATCAATTGCAGATACCCANAGTTGTTACCACATCACGAGTTTTTCTGCAAAAAGTCACTTCCCGTATCAATTGCAGATACCCACTACCTTCACAATGTGGTTGGGGATACAGAAATTAGGAAGGGAGAAGGAATGCAGTTGGATCAGTTAATACAAAATCCGTCATATACGCTGGATGGAAATACACGGATACGGCCCTTTGATTTAGATGCTCTTAGAGAAGCTTTTAATCTGAGGGAAACAACCCCTGTTGACTTACCTTCCGTGAGTAATTTTTTCTCCTACCCTGATGATATGGCTAAATGTCACTCGGTTTCCAAACATTTTCAGAAAACATTGTTTTTCATGTCTCTTTAAACTGTTTAAAGTTTTTTTTCCTTCCACCATCTTCATCTCATGAACTTGGATATTAGTTCTGTTCGTTTGGAAACCTTGTTTTTCATGTCTCTTTAACTGTTTTAAGTTTTTTTTCCTCCCACCATCTTCATATCATGAACTTGGATTTTAGTTCTGTTCACATAAGGTCCCTTTCTGAAAAATGTAGAGAGTTGAGACCTGTTTTGCAAGTCGTATCACTTTTCAGTGGCAAATGTGACTTGGAAAATATTTTTTTCCTAGTGAAGGAACTTGTTTCTGGCTTCCTTTTTGGGTAATAAATAAATCTGGAGTTGAAACTATTCAAAGTCAACGTTTTTAATGTATTTAAGAGAAGTGTCTGTGGGAACTGGTTTGGCTTTGGAACTCGCAATGATTATTGATGGCTATAGGTTTCTCTTTCATTTTGTGGTGGTTCTCTGCTTTTTATTTTTTACTTTTTATCTTGATAGACATAATGTAACAGTTAGATCTTTGTGCGCTCTTTTAATTATTGCATCTCATATACCTTTTAGGAAGAAAAGGGGGTCCCTACAATTGCAGGGAAATCTAAAAGCGAGTCAAAAGACAAGGATAGAAAGCACAAAAAGCACAAGGACAGGGACAAAGAGAAGGATAAAGAGCATAAGAAGCACAAACACCGCCATAAAGACCGAAGTAAAGATAAAGACAAGGACAAGAAGAAGGATTCTGGGGGTGAACATTCAAAGAAGCACCATGATAAGGTTCGTACATGTTTATCTATGCCGTTGGACCACCCTCTTGACTTTGGATCTAGCTACTAG

mRNA sequence

ATGAGATGTTGATTAATGGATTCTGAAGGCAAGAAGTTTGGAAGAGGTCCGAGAGAGCTTACGGGTGCTGTTGATTTGATTACTCATTACAAGTTGTTACCACATCACGAGTTTTTCTGCAAAAAGTCACTTCCCGTATCAATTGCAGATACCCANAGTTAAATTAGGAAGGGAGAAGGAATGCAGTTGGATCAGTTAATACAAAATCCGTCATATACGCTGGATGGAAATACACGGATACGGCCCTTTGATTTAGATGCTCTTAGAGAAGCTTTTAATCTGAGGGAAACAACCCCTGTTGACTTACCTTCCGAAGAAAAGGGGGTCCCTACAATTGCAGGGAAATCTAAAAGCGAGTCAAAAGACAAGGATAGAAAGCACAAAAAGCACAAGGACAGGGACAAAGAGAAGGATAAAGAGCATAAGAAGCACAAACACCGCCATAAAGACCGAAGTAAAGATAAAGACAAGGACAAGAAGAAGGATTCTGGGGGTGAACATTCAAAGAAGCACCATGATAAGGTTCGTACATGTTTATCTATGCCGTTGGACCACCCTCTTGACTTTGGATCTAGCTACTAG

Coding sequence (CDS)

ATGCAGTTGGATCAGTTAATACAAAATCCGTCATATACGCTGGATGGAAATACACGGATACGGCCCTTTGATTTAGATGCTCTTAGAGAAGCTTTTAATCTGAGGGAAACAACCCCTGTTGACTTACCTTCCGAAGAAAAGGGGGTCCCTACAATTGCAGGGAAATCTAAAAGCGAGTCAAAAGACAAGGATAGAAAGCACAAAAAGCACAAGGACAGGGACAAAGAGAAGGATAAAGAGCATAAGAAGCACAAACACCGCCATAAAGACCGAAGTAAAGATAAAGACAAGGACAAGAAGAAGGATTCTGGGGGTGAACATTCAAAGAAGCACCATGATAAGGTTCGTACATGTTTATCTATGCCGTTGGACCACCCTCTTGACTTTGGATCTAGCTACTAG

Protein sequence

MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSESKDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKVRTCLSMPLDHPLDFGSSY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo02216.1Spo02216.1mRNA


Homology
[Close]
BLAST of Spo02216.1 vs. NCBI nr
Match: gi|902231010|gb|KNA22080.1| (hypothetical protein SOVF_037250 [Spinacia oleracea])

HSP 1 Score: 210.3 bits (534), Expect = 2.100e-51
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES
Sbjct: 64  MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKVR 117
           KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDK R
Sbjct: 124 KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKKR 179
[Close]
BLAST of Spo02216.1 vs. NCBI nr
Match: gi|731335996|ref|XP_010679019.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.9 bits (468), Expect = 9.300e-44
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 64  MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 117
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 124 KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 183
[Close]
BLAST of Spo02216.1 vs. NCBI nr
Match: gi|870858658|gb|KMT10146.1| (hypothetical protein BVRB_5g119080 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.9 bits (468), Expect = 9.300e-44
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 1   MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 60

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 117
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 61  KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 120
[Close]
BLAST of Spo02216.1 vs. NCBI nr
Match: gi|731335988|ref|XP_010679015.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.1 bits (466), Expect = 1.600e-43
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 64  MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 116
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 124 KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 183
[Close]
BLAST of Spo02216.1 vs. NCBI nr
Match: gi|870858659|gb|KMT10147.1| (hypothetical protein BVRB_5g119080 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 184.1 bits (466), Expect = 1.600e-43
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 1   MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 60

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 116
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 61  KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 120
[Close]
BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_037250 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.400e-51
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES
Sbjct: 64  MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKVR 117
           KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDK R
Sbjct: 124 KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKKR 179
[Close]
BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F355_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119080 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.500e-44
Identity = 104/124 (83.87%), Postives = 112/124 (90.32%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 1   MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 60

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 117
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 61  KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 120
[Close]
BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C977_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g119080 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.100e-43
Identity = 103/123 (83.74%), Postives = 112/123 (91.06%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQNPSY+ DGNTRIRPFDLD LR+AF+LRETTPV+LPS EKG+PTIAGKSKSES
Sbjct: 1   MQLDQLIQNPSYSQDGNTRIRPFDLDVLRQAFHLRETTPVELPSVEKGMPTIAGKSKSES 60

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKK--------DSGGEHSKKHH 116
           KDK+RKHKKHKDRDKEKD+EHKKHKHRHKDRSKDKDKDK+K        DSGGEHSKKHH
Sbjct: 61  KDKERKHKKHKDRDKEKDREHKKHKHRHKDRSKDKDKDKEKKKDKSGHQDSGGEHSKKHH 120
[Close]
BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Match: B9T2I7_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0101820 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.200e-37
Identity = 95/124 (76.61%), Postives = 105/124 (84.68%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQN SY+ D N RI+PFDLD LREAF L+ETTP+DLP  EKG PTIA KSKSES
Sbjct: 64  MQLDQLIQNTSYSRDSNARIQPFDLDVLREAFQLKETTPIDLPPAEKGTPTIAAKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRH--KDRSKDKDKDKKK------DSGGEHSKKHH 117
           KDK+RKHKKHKD+DK++DKEHKKHKHRH  KDRSKDKDK+KKK      DSGG+HSKKHH
Sbjct: 124 KDKERKHKKHKDKDKKEDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHH 183
[Close]
BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Match: A0A067LLG0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.000e-37
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLIQN SY+ + N RI+PFDLD LREAF  +ETTPVDLPS EKG PTIA KSKSES
Sbjct: 64  MQLDQLIQNTSYSRESNIRIQPFDLDVLREAFQFKETTPVDLPSAEKGTPTIAVKSKSES 123

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRH--KDRSKDKDKDKKK------DSGGEHSKKHH 117
           KDK+RKHKKHKD+DKEKDKEHKKHKHRH  KDRSKDKDK+KKK      DSGG+HSKKHH
Sbjct: 124 KDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHH 183
[Close]
BLAST of Spo02216.1 vs. ExPASy Swiss-Prot
Match: MD19A_ARATH (Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.300e-33
Identity = 82/125 (65.60%), Postives = 98/125 (78.40%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLI++ S + + N RI+PFD+D L+E+F L + TPV+LP  EKG PTI  KSKSES
Sbjct: 63  MQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSKSES 122

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKD---------SGGEHSKKH 117
           KD+DRKHKKHKDRDK+KD+EHKKHKH+HKDRSKDKDKDK +D           G+HSKKH
Sbjct: 123 KDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKH 182
[Close]
BLAST of Spo02216.1 vs. ExPASy Swiss-Prot
Match: MD19B_ARATH (Probable mediator of RNA polymerase II transcription subunit 19b OS=Arabidopsis thaliana GN=MED19B PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.100e-27
Identity = 79/117 (67.52%), Postives = 89/117 (76.07%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTL-DGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSE 60
           MQLDQLI N S +  D N RI+PF LD L+EAF L +T PV+LP  EKG PT   KSKSE
Sbjct: 63  MQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKSKSE 122

Query: 61  SKDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKVR 117
           SKDKDRKH+KHKD+ KEKD+EHKKHKH+HKDR KDKDKDK +D   E S  HHDK R
Sbjct: 123 SKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKS-GHHDKKR 177
[Close]
BLAST of Spo02216.1 vs. TAIR (Arabidopsis)
Match: AT5G12230.1 (MED19A)

HSP 1 Score: 142.5 bits (358), Expect = 1.900e-34
Identity = 82/125 (65.60%), Postives = 98/125 (78.40%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTLDGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSES 60
           MQLDQLI++ S + + N RI+PFD+D L+E+F L + TPV+LP  EKG PTI  KSKSES
Sbjct: 63  MQLDQLIESISQSRETNIRIQPFDIDELQESFQLNDMTPVELPPAEKGAPTIPSKSKSES 122

Query: 61  KDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKD---------SGGEHSKKH 117
           KD+DRKHKKHKDRDK+KD+EHKKHKH+HKDRSKDKDKDK +D           G+HSKKH
Sbjct: 123 KDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKH 182
[Close]
BLAST of Spo02216.1 vs. TAIR (Arabidopsis)
Match: AT5G19480.1 (unknown protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.200e-28
Identity = 79/117 (67.52%), Postives = 89/117 (76.07%), Query Frame = 1 

		  

Query: 1   MQLDQLIQNPSYTL-DGNTRIRPFDLDALREAFNLRETTPVDLPSEEKGVPTIAGKSKSE 60
           MQLDQLI N S +  D N RI+PF LD L+EAF L +T PV+LP  EKG PT   KSKSE
Sbjct: 63  MQLDQLIPNASLSSRDTNARIQPFVLDELKEAFELNDTAPVELPPAEKGAPTTVSKSKSE 122

Query: 61  SKDKDRKHKKHKDRDKEKDKEHKKHKHRHKDRSKDKDKDKKKDSGGEHSKKHHDKVR 117
           SKDKDRKH+KHKD+ KEKD+EHKKHKH+HKDR KDKDKDK +D   E S  HHDK R
Sbjct: 123 SKDKDRKHRKHKDK-KEKDREHKKHKHKHKDRIKDKDKDKDRDKKKEKS-GHHDKKR 177
The following BLAST results are available for this feature:
BLAST of Spo02216.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902231010|gb|KNA22080.1|2.1e-5199.1hypothetical protein SOVF_0372... [more]
gi|731335996|ref|XP_010679019.1|9.3e-4483.8PREDICTED: mediator of RNA pol... [more]
gi|870858658|gb|KMT10146.1|9.3e-4483.8hypothetical protein BVRB_5g11... [more]
gi|731335988|ref|XP_010679015.1|1.6e-4383.7PREDICTED: mediator of RNA pol... [more]
gi|870858659|gb|KMT10147.1|1.6e-4383.7hypothetical protein BVRB_5g11... [more]
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BLAST of Spo02216.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RRB6_SPIOL1.4e-5199.1Uncharacterized protein OS=Spi... [more]
A0A0J8F355_BETVU6.5e-4483.8Uncharacterized protein OS=Bet... [more]
A0A0J8C977_BETVU1.1e-4383.7Uncharacterized protein OS=Bet... [more]
B9T2I7_RICCO1.2e-3776.6RNA binding protein, putative ... [more]
A0A067LLG0_JATCU2.0e-3777.4Uncharacterized protein OS=Jat... [more]
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BLAST of Spo02216.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MD19A_ARATH3.3e-3365.6Mediator of RNA polymerase II ... [more]
MD19B_ARATH2.1e-2767.5Probable mediator of RNA polym... [more]
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BLAST of Spo02216.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G12230.11.9e-3465.6MED19A[more]
AT5G19480.11.2e-2867.5unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22536LUNG CANCER METASTASIS-RELATED LCMR1 PROTEINcoord: 1..116
score: 1.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009987 cellular process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0044238 primary metabolic process
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0006606 protein import into nucleus
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0034457 Mpp10 complex
cellular_component GO:0005829 cytosol
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0016987 sigma factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo220050.91Barchart | Table
Spo025890.74Barchart | Table
Spo030540.74Barchart | Table
Spo093520.73Barchart | Table
Spo149100.72Barchart | Table
Spo198300.72Barchart | Table
Spo006700.71Barchart | Table
Spo256410.71Barchart | Table
Spo221660.70Barchart | Table
Spo224050.70Barchart | Table
Spo013110.70Barchart | Table
Spo020920.70Barchart | Table
Spo267750.69Barchart | Table
Spo113420.69Barchart | Table
Spo014090.69Barchart | Table
Spo164820.69Barchart | Table
Spo100800.69Barchart | Table
Spo197490.69Barchart | Table
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