Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTTTACCATTTAAATTTCTTCCCTTTTTTTAATACTTGGTAACTTTTTTGCTTTGCAGGATTGTGTACCCTATTGGGTTGTAACGTTTCTATAAAAGTCCCCTCATTTATGCAGGATACTTTTACTTCACCTGCTCATAACTTAAACTCGGTTACTCATTCACCGACTCAACCTCAGCCATGGCTACCATTTTGAAGCTCTTTTTCTCTCTCCTAGTCTGCCTCATTTTCTTCTCTCTTCCAGGTAAAATTTACCCTTTTCTCTTCAATTTCCATCAATGTTTAAGTGCTCCGTCCTGGATTAGTTGTCATGTTTTTTGTTTGAATTAATACCATCAACGTGACTATTAATTTTAGGCATATCTATTACAATAAACAAATGCAAATCCTATTTTATTTCATTAATTTTATTTTCATTCTTTTGAAGAAATAATTGTATGAATTTGAGATTTGTTACTTTTTTACTTTAGTTAGAACATCAAAAACATTTAAACAATTAACCTCAAAACTGTCAAATCAAATTATTAATACGGGACATAAGTAGAATCTTGTACTACTACATTCAGTAATTCACTTTTGTTTAACCGTGAGCTACTTGACTTGGGCTGGGGTACTAATGTCGGACATTGTTTGTGTTGAGTTAAATTAATTGTTCTAAGATAATAAACTTTTACTACGGAGTAGCATTATTTATTTAACCAAGTATTAATGAAATGGGTTTGAAAATTGAAATGGGAGCAGGGGAAGTAAGTTGCGCAAAACTGGTGGTAATGAACAAATGTAGGTACACAGTGTGGCCAGGAATCCAGCCAAGTGCTGGGAAAGAAATCCTAGCTCGTGGTGGGTTTCAGCTGTTGCCTAACAAATTTTACATCCTTAATCTCCCTACCGGGTGGTCCGGTCGACTATGGGGTCGTCACGGGTGCCACTTTGATGCTAACGGTCATGGTACATGTGCTACCGGTGACTGTGGTGGTACCCTCTACTGTGCTGGTGCTGGTGGTGCTCCTCCTGCTACCCTTGCTGAAATCACTCTTGGACAAGACCAGGTATTCTACTCTTTTAAGTCTTTTGTCATCTACTCGTGGATATCTAGTTCCTGTCAATTAATTTATGTGGACATCTTTAATACGGAGTAAAGAGTATTATTTCGTTTGTGCAACTGTATCTCTTAAATAAATACGGCCAGTGAAACCCTTAAATCAATACGGAGGGAGTATCCGATATCTCTCATCACATACTCCGTATTTGTTACAGAGTATTTAATCTAATCAAAAGTCATATTACTTCTAAAGGAATGAGGTTTAATGGTATGAATTTATTCTTATTACCGTAAACCAATACTGGAAAACTTACTTACTTAGATGGCTAATTTTAAAAAAGTCCATGGTTCTATAACATAACTTGGGTCATAGCAAATCTGTTTTCTCTCTTGTTATATGTCTGCATCATAAGTGTGTCCATGACTACGTGTATAATTTAATATAATATATTAATATGTGATTGTAACATACAGGACTTCTACGACGTTAGTCTAGTAGATGGCTACAATCTGGCAATCTCATTTGTACCCTTCAAAGCAGCGTCAGGGCAATGTGCGCCAACAGGGTGCATTAGCGATCTAAACACAATGTGCCCGACAGGACTCCAAGTCCGCGGTGCACGAGGAGGTGTAGTAGCTTGCAAAAGCGCTTGTTCCGCCTTCAACTCCCCAAGGTATTGTTGCACAGGCAGCTTTGGGTCTCCTCAGTCTTGCAAGCCCACAGTCTACTCCAAAATCTTCAAGACCGCTTGCCCACGCGCTTACTCCTACGCATATGATGATCCTACCAGCATCTCTACTTGTACTAGGGCTAACTATTTAGTCACTTTCTGTCCCCACCACCACCATTGACTCACTTTTTTATTACAGTAGTAGATCTAAAAATATGAAAACAAAAATTAAATAAGATCATTCTGAGTAATGTTGTTCTGTAGTTAGTGACTTAGTGGTTCTTTGAATTATGGGGAGATTCTGTTTTTTGTGTCAGCCTGCATGTCGGTCTATTGTGTGTACTGCTCACCATTAATGGATTAATGGATTATTATAATACATTATTATTTACTAGTACTCCCTCCGTTACTTATTGTTTGCCCATGAAACAAATGTGTTTTATTAAGACATGGGTGATTGAACACGAAAAATCACATGAATGCAACATATCCAGCATACGACATACATACATGTTACTATCCCTCGCTTAAAATCAACTCACAACCTGGAGTTTTTCAATAATTTCAAAATGCATCTGCAGGTCAGGAAATAATTCAGTAAAATAAGTTTTCTCACAGACTTGCAGCTTTCCCTTGCTCTTCTGCCTTCCGGAGTTGAGTATTTGACGAAATGTATCCTTCTCTTCACGTATCCAAGGTCGCCGTGTGTCGTTCCATTGCCTTGGAGTCCCATGAAGCACAAAGCGTAAGCTTTTGTCCTTGTCAATAAGCCTCTCTGCTACTCTCTGGATGACAACATCATCAGTTAGATAAGCACCAAAAGAATTCAGACCAACGTCAACGTAATGCACTTCAGTTATGCTGTCAAAGAAGCTCTCTCTAGAAACTGGTACAATGTGGTTCCCCGTTATTTTGGTGAAACCGGTAAGCTGTGGTGGATCCTCCATGCATTTGATGTCTGAGAATCCAAGCTCCGAAACTAGCTGATTGAGTATTATACCGCCCTTGCTAAAACCGAGAATGATTGTGTTAGGACGGCAAGAGGGTGTATGATCTGCAGAAAGCTGGGGTTCTTTGTGCGCGATGTTCTTAGCCCTCTGTAGATAATTCATTCAGATAACATTAAGAATATGTAGTTGAGGCATCTGCATCAATATCCAGAAATTTCTAGTACTCCAGAATCATTTAATATACAATCAATTAAC TTTTTACCATTTAAATTTCTTCCCTTTTTTTAATACTTGGTAACTTTTTTGCTTTGCAGGATTGTGTACCCTATTGGGTTGTAACGTTTCTATAAAAGTCCCCTCATTTATGCAGGATACTTTTACTTCACCTGCTCATAACTTAAACTCGGTTACTCATTCACCGACTCAACCTCAGCCATGGCTACCATTTTGAAGCTCTTTTTCTCTCTCCTAGTCTGCCTCATTTTCTTCTCTCTTCCAGGGGAAGTAAGTTGCGCAAAACTGGTGGTAATGAACAAATGTAGGTACACAGTGTGGCCAGGAATCCAGCCAAGTGCTGGGAAAGAAATCCTAGCTCGTGGTGGGTTTCAGCTGTTGCCTAACAAATTTTACATCCTTAATCTCCCTACCGGGTGGTCCGGTCGACTATGGGGTCGTCACGGGTGCCACTTTGATGCTAACGGTCATGGTACATGTGCTACCGGTGACTGTGGTGGTACCCTCTACTGTGCTGGTGCTGGTGGTGCTCCTCCTGCTACCCTTGCTGAAATCACTCTTGGACAAGACCAGGACTTCTACGACGTTAGTCTAGTAGATGGCTACAATCTGGCAATCTCATTTGTACCCTTCAAAGCAGCGTCAGGGCAATGTGCGCCAACAGGGTGCATTAGCGATCTAAACACAATGTGCCCGACAGGACTCCAAGTCCGCGGTGCACGAGGAGGTGTAGTAGCTTGCAAAAGCGCTTGTTCCGCCTTCAACTCCCCAAGGTATTGTTGCACAGGCAGCTTTGGGTCTCCTCAGTCTTGCAAGCCCACAGTCTACTCCAAAATCTTCAAGACCGCTTGCCCACGCGCTTACTCCTACGCATATGATGATCCTACCAGCATCTCTACTTGTACTAGGGCTAACTATTTAGTCACTTTCTGTCCCCACCACCACCATTGACTCACTTTTTTATTACAGTAGTAGATCTAAAAATATGAAAACAAAAATTAAATAAGATCATTCTGAGTAATGTTGTTCTGTAGTTAGTGACTTAGTGGTTCTTTGAATTATGGGGAGATTCTGTTTTTTGTGTCAGCCTGCATGTCGGTCTATTGTGTGTACTGCTCACCATTAATGGATTAATGGATTATTATAATACATTATTATTTACTAGTACTCCCTCCGTTACTTATTGTTTGCCCATGAAACAAATGTGTTTTATTAAGACATGGGTGATTGAACACGAAAAATCACATGAATGCAACATATCCAGCATACGACATACATACATGTTACTATCCCTCGCTTAAAATCAACTCACAACCTGGAGTTTTTCAATAATTTCAAAATGCATCTGCAGGTCAGGAAATAATTCAGTAAAATAAGTTTTCTCACAGACTTGCAGCTTTCCCTTGCTCTTCTGCCTTCCGGAGTTGAGTATTTGACGAAATGTATCCTTCTCTTCACGTATCCAAGGTCGCCGTGTGTCGTTCCATTGCCTTGGAGTCCCATGAAGCACAAAGCGTAAGCTTTTGTCCTTGTCAATAAGCCTCTCTGCTACTCTCTGGATGACAACATCATCAGTTAGATAAGCACCAAAAGAATTCAGACCAACGTCAACGTAATGCACTTCAGTTATGCTGTCAAAGAAGCTCTCTCTAGAAACTGGTACAATGTGGTTCCCCGTTATTTTGGTGAAACCGGTAAGCTGTGGTGGATCCTCCATGCATTTGATGTCTGAGAATCCAAGCTCCGAAACTAGCTGATTGAGTATTATACCGCCCTTGCTAAAACCGAGAATGATTGTGTTAGGACGGCAAGAGGGTGTATGATCTGCAGAAAGCTGGGGTTCTTTGTGCGCGATGTTCTTAGCCCTCTGTAGATAATTCATTCAGATAACATTAAGAATATGTAGTTGAGGCATCTGCATCAATATCCAGAAATTTCTAGTACTCCAGAATCATTTAATATACAATCAATTAAC ATGGCTACCATTTTGAAGCTCTTTTTCTCTCTCCTAGTCTGCCTCATTTTCTTCTCTCTTCCAGGGGAAGTAAGTTGCGCAAAACTGGTGGTAATGAACAAATGTAGGTACACAGTGTGGCCAGGAATCCAGCCAAGTGCTGGGAAAGAAATCCTAGCTCGTGGTGGGTTTCAGCTGTTGCCTAACAAATTTTACATCCTTAATCTCCCTACCGGGTGGTCCGGTCGACTATGGGGTCGTCACGGGTGCCACTTTGATGCTAACGGTCATGGTACATGTGCTACCGGTGACTGTGGTGGTACCCTCTACTGTGCTGGTGCTGGTGGTGCTCCTCCTGCTACCCTTGCTGAAATCACTCTTGGACAAGACCAGGACTTCTACGACGTTAGTCTAGTAGATGGCTACAATCTGGCAATCTCATTTGTACCCTTCAAAGCAGCGTCAGGGCAATGTGCGCCAACAGGGTGCATTAGCGATCTAAACACAATGTGCCCGACAGGACTCCAAGTCCGCGGTGCACGAGGAGGTGTAGTAGCTTGCAAAAGCGCTTGTTCCGCCTTCAACTCCCCAAGGTATTGTTGCACAGGCAGCTTTGGGTCTCCTCAGTCTTGCAAGCCCACAGTCTACTCCAAAATCTTCAAGACCGCTTGCCCACGCGCTTACTCCTACGCATATGATGATCCTACCAGCATCTCTACTTGTACTAGGGCTAACTATTTAGTCACTTTCTGTCCCCACCACCACCATTGA MATILKLFFSLLVCLIFFSLPGEVSCAKLVVMNKCRYTVWPGIQPSAGKEILARGGFQLLPNKFYILNLPTGWSGRLWGRHGCHFDANGHGTCATGDCGGTLYCAGAGGAPPATLAEITLGQDQDFYDVSLVDGYNLAISFVPFKAASGQCAPTGCISDLNTMCPTGLQVRGARGGVVACKSACSAFNSPRYCCTGSFGSPQSCKPTVYSKIFKTACPRAYSYAYDDPTSISTCTRANYLVTFCPHHHH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01995.1 vs. NCBI nr
Match: gi|902196912|gb|KNA13260.1| (hypothetical protein SOVF_118440 [Spinacia oleracea]) HSP 1 Score: 474.2 bits (1219), Expect = 1.400e-130 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of Spo01995.1 vs. NCBI nr
Match: gi|731323932|ref|XP_010672697.1| (PREDICTED: thaumatin-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 470.3 bits (1209), Expect = 2.100e-129 Identity = 218/249 (87.55%), Postives = 231/249 (92.77%), Query Frame = 1
BLAST of Spo01995.1 vs. NCBI nr
Match: gi|802753657|ref|XP_012088543.1| (PREDICTED: thaumatin-like protein [Jatropha curcas]) HSP 1 Score: 377.1 bits (967), Expect = 2.400e-101 Identity = 182/249 (73.09%), Postives = 199/249 (79.92%), Query Frame = 1
BLAST of Spo01995.1 vs. NCBI nr
Match: gi|359491024|ref|XP_003634206.1| (PREDICTED: thaumatin-like protein [Vitis vinifera]) HSP 1 Score: 377.1 bits (967), Expect = 2.400e-101 Identity = 179/242 (73.97%), Postives = 197/242 (81.40%), Query Frame = 1
BLAST of Spo01995.1 vs. NCBI nr
Match: gi|698475345|ref|XP_009785059.1| (PREDICTED: thaumatin-like protein isoform X2 [Nicotiana sylvestris]) HSP 1 Score: 375.2 bits (962), Expect = 9.100e-101 Identity = 176/248 (70.97%), Postives = 202/248 (81.45%), Query Frame = 1
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R169_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118440 PE=4 SV=1) HSP 1 Score: 474.2 bits (1219), Expect = 1.000e-130 Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPA1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060570 PE=4 SV=1) HSP 1 Score: 470.3 bits (1209), Expect = 1.400e-129 Identity = 218/249 (87.55%), Postives = 231/249 (92.77%), Query Frame = 1
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Match: D7SJA2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02470 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 1.700e-101 Identity = 179/242 (73.97%), Postives = 197/242 (81.40%), Query Frame = 1
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Match: A0A067JWI9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27079 PE=4 SV=1) HSP 1 Score: 377.1 bits (967), Expect = 1.700e-101 Identity = 182/249 (73.09%), Postives = 199/249 (79.92%), Query Frame = 1
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Match: A0A059D0X6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B00944 PE=4 SV=1) HSP 1 Score: 373.6 bits (958), Expect = 1.800e-100 Identity = 174/246 (70.73%), Postives = 194/246 (78.86%), Query Frame = 1
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2) HSP 1 Score: 350.1 bits (897), Expect = 2.000e-95 Identity = 168/250 (67.20%), Postives = 194/250 (77.60%), Query Frame = 1
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=2 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 2.600e-63 Identity = 111/221 (50.23%), Postives = 141/221 (63.80%), Query Frame = 1
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1) HSP 1 Score: 240.7 bits (613), Expect = 1.700e-62 Identity = 125/236 (52.97%), Postives = 148/236 (62.71%), Query Frame = 1
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 6.300e-62 Identity = 117/235 (49.79%), Postives = 147/235 (62.55%), Query Frame = 1
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 1.100e-61 Identity = 121/237 (51.05%), Postives = 155/237 (65.40%), Query Frame = 1
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Match: AT1G73620.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 351.7 bits (901), Expect = 3.800e-97 Identity = 167/247 (67.61%), Postives = 192/247 (77.73%), Query Frame = 1
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Match: AT1G18250.2 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 347.4 bits (890), Expect = 7.100e-96 Identity = 168/250 (67.20%), Postives = 195/250 (78.00%), Query Frame = 1
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Match: AT1G75030.1 (thaumatin-like protein 3) HSP 1 Score: 264.6 bits (675), Expect = 6.100e-71 Identity = 126/225 (56.00%), Postives = 149/225 (66.22%), Query Frame = 1
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Match: AT1G75050.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 257.7 bits (657), Expect = 7.400e-69 Identity = 128/238 (53.78%), Postives = 158/238 (66.39%), Query Frame = 1
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Match: AT1G19320.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 257.3 bits (656), Expect = 9.700e-69 Identity = 129/244 (52.87%), Postives = 153/244 (62.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01995.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01995.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01995.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01995.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
|