Spo01842 (gene)

Overview
NameSpo01842
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionSenescence regulator
Locationchr5 : 33874321 .. 33874740 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAAGAATACCAAGAATCCGAGATTATGTTTTCCGACACCCATCTATCAAACTCTTACCTCCAAGTTAGCTGGAGCACTAATCAGCTGCGAAAGAAGCCCAAACAACGTCGTCGAAACAGAGGAGGGAAATCCCCGCCGTTGGATATACCGGCTACCAGCCGGTATAATGAAATGACGGGCTATGGTATTAATTATTATGATGACGACGACGATGAAGATGAAGATGATGAAAACTTAAGGTTGCCGCCACATTTGATCGTAGCGCGTAGAATAAACAATAACGACAATAACGTGAGCAGGAAAATGGCGTGTTCAATTTGTATACAAGATGAGAAAGGGAGAATTCTCAAGGGTAGAAATTTGTGTCAAGTTAGGAACTCAATTCTACGCCTTACCGGTTTCTATGAAACGTGA

mRNA sequence

ATGGAAGAAGAATACCAAGAATCCGAGATTATGTTTTCCGACACCCATCTATCAAACTCTTACCTCCAAGTTAGCTGGAGCACTAATCAGCTGCGAAAGAAGCCCAAACAACGTCGTCGAAACAGAGGAGGGAAATCCCCGCCGTTGGATATACCGGCTACCAGCCGGTATAATGAAATGACGGGCTATGGTATTAATTATTATGATGACGACGACGATGAAGATGAAGATGATGAAAACTTAAGGTTGCCGCCACATTTGATCGTAGCGCGTAGAATAAACAATAACGACAATAACGTGAGCAGGAAAATGGCGTGTTCAATTTGTATACAAGATGAGAAAGGGAGAATTCTCAAGGGTAGAAATTTGTGTCAAGTTAGGAACTCAATTCTACGCCTTACCGGTTTCTATGAAACGTGA

Coding sequence (CDS)

ATGGAAGAAGAATACCAAGAATCCGAGATTATGTTTTCCGACACCCATCTATCAAACTCTTACCTCCAAGTTAGCTGGAGCACTAATCAGCTGCGAAAGAAGCCCAAACAACGTCGTCGAAACAGAGGAGGGAAATCCCCGCCGTTGGATATACCGGCTACCAGCCGGTATAATGAAATGACGGGCTATGGTATTAATTATTATGATGACGACGACGATGAAGATGAAGATGATGAAAACTTAAGGTTGCCGCCACATTTGATCGTAGCGCGTAGAATAAACAATAACGACAATAACGTGAGCAGGAAAATGGCGTGTTCAATTTGTATACAAGATGAGAAAGGGAGAATTCTCAAGGGTAGAAATTTGTGTCAAGTTAGGAACTCAATTCTACGCCTTACCGGTTTCTATGAAACGTGA

Protein sequence

MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKGRNLCQVRNSILRLTGFYET
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01842.1Spo01842.1mRNA


Homology
[Close]
BLAST of Spo01842.1 vs. NCBI nr
Match: gi|902229148|gb|KNA21396.1| (hypothetical protein SOVF_043580 [Spinacia oleracea])

HSP 1 Score: 278.9 bits (712), Expect = 4.900e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEM 60
           MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSR NEM
Sbjct: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRDNEM 60

Query: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG 120
           TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG
Sbjct: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG 120

Query: 121 RNLCQVRNSILRLTGFYET 140
           RNLCQVRNSILRLTGFYET
Sbjct: 121 RNLCQVRNSILRLTGFYET 139
[Close]
BLAST of Spo01842.1 vs. NCBI nr
Match: gi|870843515|gb|KMS96670.1| (hypothetical protein BVRB_8g200910 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 130.6 bits (327), Expect = 2.200e-27
Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEM 60
           MEEE+QES+++FSD +  +S+  +       R K K++R NR  KSPPLDIP +      
Sbjct: 1   MEEEFQESDVVFSDYYKPHSHYHIQLGK---RNKKKKQRPNRSDKSPPLDIPNSVNGIRF 60

Query: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDN-NVSRKMACSICIQDEKGRILK 120
               I Y DD + ++ED E   LPPHLI+A+RIN+    NV RKMACS+ I+DEKGRILK
Sbjct: 61  VDAIIEYDDDLECDNEDSEGNMLPPHLIIAQRINSYSYYNVRRKMACSLHIEDEKGRILK 120

Query: 121 GRNLCQVRNSILRLTGFYET 140
           GRNL +VRNSILRLTGF ET
Sbjct: 121 GRNLFEVRNSILRLTGFIET 137
[Close]
BLAST of Spo01842.1 vs. NCBI nr
Match: gi|672137349|ref|XP_008792398.1| (PREDICTED: nucleolin-like [Phoenix dactylifera])

HSP 1 Score: 82.4 bits (202), Expect = 6.800e-13
Identity = 58/152 (38.16%), Postives = 81/152 (53.29%), Query Frame = 1 

		  

Query: 3   EEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEMTG 62
           EE+QE ++++SD    +           L K+P  R++ R  +S P+DIP  +R      
Sbjct: 2   EEFQEDDVLWSDGEHQDD------DDTVLEKQPSTRQQARRKESAPVDIPPKARVGASRS 61

Query: 63  YGINY-------------YDDDDDEDEDDENL---RLPPHLIVARRINNNDNNVSRKMAC 122
           +                 YDDDDD+D+   N    R+PPH+IVARR        S KMA 
Sbjct: 62  WAPRCSFHDSDNNSMDGDYDDDDDDDDFGNNSSDERIPPHIIVARR-------TSDKMAF 121

Query: 123 SICIQDEKGRILKGRNLCQVRNSILRLTGFYE 139
           S+C+   KGR LKGR+L +VRN+ILR+TGF E
Sbjct: 122 SVCV--GKGRTLKGRDLYRVRNAILRMTGFLE 138
[Close]
BLAST of Spo01842.1 vs. NCBI nr
Match: gi|703094026|ref|XP_010095120.1| (hypothetical protein L484_015620 [Morus notabilis])

HSP 1 Score: 81.3 bits (199), Expect = 1.500e-12
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 

		  

Query: 3   EEYQESEIMFSD-------THLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIP-AT 62
           EEYQESE++FSD       TH     + VS  ++      K +++ R   S PL+IP + 
Sbjct: 5   EEYQESEVIFSDDDNNNEGTHFDFQDMIVSLKSSS---NSKIKKKKRVANSVPLNIPDSV 64

Query: 63  SRYNEMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEK 122
            R+ +      ++   DD+ED +D+   +PPH+IV RR+         KMA S+C  +  
Sbjct: 65  FRFADKRDVDRDW---DDEEDGNDDGELVPPHVIVGRRM------AGGKMAYSVCTGN-- 124

Query: 123 GRILKGRNLCQVRNSILRLTGFYET 140
           GR LKGR+L QVRNSILR+TGF ET
Sbjct: 125 GRTLKGRDLSQVRNSILRMTGFLET 135
[Close]
BLAST of Spo01842.1 vs. NCBI nr
Match: gi|1009106848|ref|XP_015876601.1| (PREDICTED: uncharacterized protein LOC107413218 [Ziziphus jujuba])

HSP 1 Score: 80.5 bits (197), Expect = 2.600e-12
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTH---LSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPAT-SR 60
           M EE+QESEI+F+D++        + VS +T     K + +++ +   S P+ IP   SR
Sbjct: 1   MAEEFQESEIIFADSNDNCFDFKEMIVSPATTVKSSKKRNKKKKKMANSVPVSIPEIFSR 60

Query: 61  YNEMTGYGINYYDDDDDEDEDDENLRL-PPHLIVARRINNNDNNVSRKMACSICIQDEKG 120
           + +         +D+++E+ +DE+  L PPH+IV RRI       + +MA S+C  +  G
Sbjct: 61  FRDNEDDNHQAVEDEEEEEWNDEDGELVPPHVIVGRRI-------AGQMAFSVCTGN--G 120

Query: 121 RILKGRNLCQVRNSILRLTGFYET 140
           R LKGR+L QVRNSILR+TGF ET
Sbjct: 121 RTLKGRDLSQVRNSILRMTGFLET 135
[Close]
BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPD2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_043580 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.400e-72
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEM 60
           MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSR NEM
Sbjct: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRDNEM 60

Query: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG 120
           TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG
Sbjct: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILKG 120

Query: 121 RNLCQVRNSILRLTGFYET 140
           RNLCQVRNSILRLTGFYET
Sbjct: 121 RNLCQVRNSILRLTGFYET 139
[Close]
BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E0N6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200910 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.500e-27
Identity = 76/140 (54.29%), Postives = 96/140 (68.57%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNEM 60
           MEEE+QES+++FSD +  +S+  +       R K K++R NR  KSPPLDIP +      
Sbjct: 1   MEEEFQESDVVFSDYYKPHSHYHIQLGK---RNKKKKQRPNRSDKSPPLDIPNSVNGIRF 60

Query: 61  TGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDN-NVSRKMACSICIQDEKGRILK 120
               I Y DD + ++ED E   LPPHLI+A+RIN+    NV RKMACS+ I+DEKGRILK
Sbjct: 61  VDAIIEYDDDLECDNEDSEGNMLPPHLIIAQRINSYSYYNVRRKMACSLHIEDEKGRILK 120

Query: 121 GRNLCQVRNSILRLTGFYET 140
           GRNL +VRNSILRLTGF ET
Sbjct: 121 GRNLFEVRNSILRLTGFIET 137
[Close]
BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Match: W9QYD6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015620 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-12
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1 

		  

Query: 3   EEYQESEIMFSD-------THLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIP-AT 62
           EEYQESE++FSD       TH     + VS  ++      K +++ R   S PL+IP + 
Sbjct: 5   EEYQESEVIFSDDDNNNEGTHFDFQDMIVSLKSSS---NSKIKKKKRVANSVPLNIPDSV 64

Query: 63  SRYNEMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEK 122
            R+ +      ++   DD+ED +D+   +PPH+IV RR+         KMA S+C  +  
Sbjct: 65  FRFADKRDVDRDW---DDEEDGNDDGELVPPHVIVGRRM------AGGKMAYSVCTGN-- 124

Query: 123 GRILKGRNLCQVRNSILRLTGFYET 140
           GR LKGR+L QVRNSILR+TGF ET
Sbjct: 125 GRTLKGRDLSQVRNSILRMTGFLET 135
[Close]
BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B601_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g200900 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-12
Identity = 57/146 (39.04%), Postives = 76/146 (52.05%), Query Frame = 1 

		  

Query: 3   EEYQESEIMFSDTHLSNSYLQV-------SWSTNQLRKKPKQRRRNRGGKSPPLDIPATS 62
           ++++ESE+MFSD     S           +W         K   + R   S P+DIP  +
Sbjct: 4   DDFEESEVMFSDYSSDESVESYESENSDRTWKHYSQSNASKLMVKRRVSSSVPVDIPMIN 63

Query: 63  RYN-EMTGYGINYYDDDDDEDEDD--ENLRLPPHLIVARRINNNDNNVSRKMACSICIQD 122
            +  +M       +DDDDD+D DD  E +RLPPHLIV RR+N        +MA S     
Sbjct: 64  SFEYDMDVSSFEPFDDDDDDDNDDDVEMMRLPPHLIVERRVN-------EEMARSF---- 123

Query: 123 EKGRILKGRNLCQVRNSILRLTGFYE 139
                LKG+NLC+VRNSILR+TGF E
Sbjct: 124 ---SPLKGKNLCEVRNSILRMTGFLE 135
[Close]
BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Match: A0A078E5I3_BRANA (BnaC07g09750D protein OS=Brassica napus GN=BnaC07g09750D PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.400e-11
Identity = 57/147 (38.78%), Postives = 78/147 (53.06%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRN-----RGGKSPPLDIPA-- 60
           M EE+ ES+I+FSD+             N+   +P   R N     R  K+ PL  PA  
Sbjct: 1   MSEEFDESDIIFSDSFFRTRGRD---DMNEKENRPVGFRENSKNKPRRSKTAPLPSPAAF 60

Query: 61  -TSRYNEMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQD 120
            TS    + G  +  Y DD++  +D   + +PPHLIV RR+         +MA S+C  +
Sbjct: 61  STSLPVNIPGNVVQRYTDDEEYSDDGGRIMVPPHLIVGRRME------GCQMAFSVCTGN 120

Query: 121 EKGRILKGRNLCQVRNSILRLTGFYET 140
             GR LKGR+L +VRNS+LRLTGF ET
Sbjct: 121 --GRTLKGRDLSRVRNSVLRLTGFLET 136
[Close]
BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Match: AT1G29640.1 (Protein of unknown function, DUF584)

HSP 1 Score: 64.3 bits (155), Expect = 6.700e-11
Identity = 52/150 (34.67%), Postives = 77/150 (51.33%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHL----------SNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLD 60
           M EE+ ESEI+FSD +             +   V +  N  R   K  RR+   K+ PL 
Sbjct: 1   MSEEFDESEIIFSDNYFPIRRREDGNEKENNRPVDFRENSERVWNKSSRRS---KTTPLP 60

Query: 61  IPATSRYNEM-TGYGINYYDDDDDEDEDDENLRL-PPHLIVARRINNNDNNVSRKMACSI 120
              T+  + +     +  Y  +++  +DD   ++ PPHLIV RR+         +MA S+
Sbjct: 61  SAVTAFSSSLPVNIPMRRYSTEEEYSDDDGGRKMIPPHLIVGRRMEGG------QMAFSV 120

Query: 121 CIQDEKGRILKGRNLCQVRNSILRLTGFYE 139
           C  +  GR LKGR+L +VRNS+L+LTGF E
Sbjct: 121 CTGN--GRTLKGRDLSRVRNSVLKLTGFLE 139
[Close]
BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Match: AT2G34340.1 (Protein of unknown function, DUF584)

HSP 1 Score: 60.8 bits (146), Expect = 7.400e-10
Identity = 51/144 (35.42%), Postives = 77/144 (53.47%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVS---WSTNQLRKKPKQRRRNRGGK-SPPLDIPATSR 60
           M EE+ ESE++FSD   S  + +     + ++  RKK ++ +R    K S    +P +  
Sbjct: 1   MAEEFDESEVVFSDGLSSVLHKENENRLFGSDMERKKTRRIKRTTTEKASLSSSLPVSIP 60

Query: 61  YNEMTGYGINYYDDDDDEDEDDEN--LRLPPHLIVARRINNNDNNVSRKMACSICIQDEK 120
            N    Y +   +D+  E+E  E     +PPH+++ RRI         +MA S+C     
Sbjct: 61  ENIFRRY-VGKEEDEYSEEEYSEGGGEMIPPHIMIGRRIQGG------QMAFSVC--SGS 120

Query: 121 GRILKGRNLCQVRNSILRLTGFYE 139
           GR LKGR+L +VRNS+LRLTGF E
Sbjct: 121 GRTLKGRDLSRVRNSVLRLTGFLE 135
[Close]
BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Match: AT5G45630.1 (Protein of unknown function, DUF584)

HSP 1 Score: 56.6 bits (135), Expect = 1.400e-8
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSD-THLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPATSRYNE 60
           M EE+QES+I+FSD + +S S        ++  +K   RR     K+ P+ IP  +    
Sbjct: 1   MSEEFQESDIIFSDQSKISTSSRYTKLYNSRNDEKKGTRRHETAEKTSPVRIPTNN---- 60

Query: 61  MTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRILK 120
                    + D  E+EDD+    PPH+I+ RR+         ++A S C        LK
Sbjct: 61  -----FRCLEWDTTEEEDDKT---PPHVIIERRMKE-------QIAFSACT-------LK 113

Query: 121 GRNLCQVRNSILRLTGFYE 139
           GR+L + RNS+LR+TGF E
Sbjct: 121 GRDLSRHRNSVLRMTGFLE 113
[Close]
BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Match: AT3G15040.1 (Protein of unknown function, DUF584)

HSP 1 Score: 54.3 bits (129), Expect = 7.000e-8
Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1 

		  

Query: 43  GGKSP---PLDIP-ATSRYNEMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDN 102
           GGK P   P+ +P  +S             D  DD++E++E   LPPH IVAR +     
Sbjct: 151 GGKYPQSAPVQVPLVSSAMMNRHKKEFKLTDVVDDDEEEEEGEMLPPHEIVARSLAQ--- 210

Query: 103 NVSRKMACSICIQDEKGRILKGRNLCQVRNSILRLTGFYE 139
             S  ++CS+   +  GR LKGR+L QVRN++ R TGF +
Sbjct: 211 --SSLLSCSVL--EGAGRTLKGRDLRQVRNAVFRRTGFID 243
[Close]
BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Match: AT4G18980.1 (AtS40-3)

HSP 1 Score: 54.3 bits (129), Expect = 7.000e-8
Identity = 43/140 (30.71%), Postives = 66/140 (47.14%), Query Frame = 1 

		  

Query: 1   MEEEYQESEIMFSDTHLSNSYLQVSWSTNQLRKKPKQRRRNRGGKSPPLDIPA--TSRYN 60
           M EE+QESE++FSD   +    ++S +     +K  ++ +     S P+ IP+  T RY 
Sbjct: 1   MSEEFQESEVIFSDESFTRKDNKISHNNENYERKSTEKDKI----SSPVRIPSRTTIRYT 60

Query: 61  EMTGYGINYYDDDDDEDEDDENLRLPPHLIVARRINNNDNNVSRKMACSICIQDEKGRIL 120
           E                  +E    PPH+I+ +R          +MA S C        L
Sbjct: 61  E------------------EEGEMTPPHVIIEKR------RTEAQMAFSFCT-------L 105

Query: 121 KGRNLCQVRNSILRLTGFYE 139
           KGR+L + RN++LR+TGF E
Sbjct: 121 KGRDLSRHRNTVLRMTGFLE 105
The following BLAST results are available for this feature:
BLAST of Spo01842.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229148|gb|KNA21396.1|4.9e-7299.2hypothetical protein SOVF_0435... [more]
gi|870843515|gb|KMS96670.1|2.2e-2754.2hypothetical protein BVRB_8g20... [more]
gi|672137349|ref|XP_008792398.1|6.8e-1338.1PREDICTED: nucleolin-like [Pho... [more]
gi|703094026|ref|XP_010095120.1|1.5e-1240.6hypothetical protein L484_0156... [more]
gi|1009106848|ref|XP_015876601.1|2.6e-1239.5PREDICTED: uncharacterized pro... [more]
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BLAST of Spo01842.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RPD2_SPIOL3.4e-7299.2Uncharacterized protein OS=Spi... [more]
A0A0J8E0N6_BETVU1.5e-2754.2Uncharacterized protein OS=Bet... [more]
W9QYD6_9ROSA1.1e-1240.6Uncharacterized protein OS=Mor... [more]
A0A0J8B601_BETVU2.3e-1239.0Uncharacterized protein OS=Bet... [more]
A0A078E5I3_BRANA3.4e-1138.7BnaC07g09750D protein OS=Brass... [more]
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BLAST of Spo01842.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01842.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT1G29640.16.7e-1134.6Protein of unknown function, D... [more]
AT2G34340.17.4e-1035.4Protein of unknown function, D... [more]
AT5G45630.11.4e-833.8Protein of unknown function, D... [more]
AT3G15040.17.0e-838.0Protein of unknown function, D... [more]
AT4G18980.17.0e-830.7AtS40-3[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007608Senescence regulator S40PFAMPF04520Senescence_regcoord: 28..138
score: 3.7
NoneNo IPR availablePANTHERPTHR33083FAMILY NOT NAMEDcoord: 1..139
score: 2.7

RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo188860.73Barchart | Table
Spo172410.72Barchart | Table
Spo035100.71Barchart | Table
Spo213620.68Barchart | Table
Spo150300.66Barchart | Table