Spo01680 (gene) | SpinachBase

Overview


Name	Spo01680
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RING finger protein 1
Location	chr2 : 50283530 .. 50292297 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGTCTTCTTTAAATAATCTCAATTTACAATTAACGTAACACATTCAGAACTTTATAGATATTACATGAGTTTTTAGCGTGCATTAGTCTATGCTCGATGATGAATTTAGAACGATTAAAGCGAGTTAGCCTAGCCCAACCATAATTTGTTATAACATGAGCTTGTTTAACTAAATAGTAATATGTTGGTGAAGTTGAGTGGATTTATGTCCAGGTTAATTTACTTTACCTGTTTTATAATCACCACTTTGTATTACAATTTTTGAAGTTTTGTTAACGCAACATACACTGAACTGATAAAAGCTACATTAATAGATTAAATTAAAAAAATAAAACTCCATCTCGTACTTTGTTTGTACTTTTCATTTTCCAACGTATTCTCCATCCAAAAATAGACGACGTCATCTGTAAATAAGTTTCCATCAAACCTCCTTTGCTATAGACAATAAATTTTCATACAAAGTATTTCATTTCCTTGATAAGCTAGGTTATTTAAAATCTTGAATATTGATTGGTATACCACAAAATATACAGACATACCTAATCTTTGCTACATCTTCCCCTCAGACTTTTATTTTAAAAATAACACCACTATATTGACCGTGTACTTAGGGCCGGTGCGTTTATAGACAACGTAACCTAGCATAATTATCCATTAACTCAATGAANGACCGTGTACTTAGGGCCGGTGCGTTTATAGACAACGTAACCTAGCATAATTATCCATTAACTCAATGAAGTGTAGCATTGACAAACAGTCAGCACTTAGCACTTACTGAAGTAGGCCACTTTACTTGATAGCACTACTTAAGCTTGTACAACATTAATCAAAAGTCAAAAGTAATGACAAATTGACAACATGTATTTTTTTTTTGGTGTTAGCACCCGCGAGTCACCCTTAGGGCTAATTTGGATTCGGGGCGAGTTCTGGGTGGTTAGGTTCCAGTCCCCTCCCAATTGTTGTTGGGGGGGATCGAACACGGGTTCTCCCTACCAAGTTCAGCCCCAATCACCACTGAACCAACAAACAATTGGTTACAACATGTATTTAATTATACGGTAGAAACATAGTTTGAACAAAAAGCACAGAAAAATGTGACAACAATAATTATAATAGTACTCCGTATGTGAATTGAAAATTCTGACTAAAACACCCATGCATCATGCACAAATCCATTAACTAACTTACACCTATCAAAAATCAATTATCATGTAGCATGATCGATGATGCATGGCAAAGCAATTCTACAAAATGAAGAAAACAGATTCACTTTATATTAGTAAAATGATTACTTTCGTGTTATTAAAATATTTGATTATGGAGTACTTTTGTATAACCTAATTAATTTCTATGGTTAAGTAGTTGCATACTTGTATTAGCTCATTAACCATCTAAGTTAAATGTATACAGAGAATAACCTAATTTAAAGTACTCCCTCTATCTTTTAATGTTTGCTCCATTCATTTTTGGTTCAAACTTCTAAAAGTTTGAAAATTAATTTTTACTAACCTATAAAAATAAAATATTTATGGTGGATATTGTTAACTCGGTTCAATATATAATTTTAGAATATCAATTTTTATGACGTGTAAATTTGAGATATTTACATTTTAAATCACATTTTGAAGACCTTAAAAAGTCACATGCAGCAAACAATAAGAGATAGAGGGAGGATCTTAATCTATGACATCTATCAATGAGTCTGTAATACGTACTACGTATTTCATTTGCTCCTTGAGTAACTTAGCCAGATCAGAATTGTTACGACATAAACAAATAATGACCTAAATACGCATGGAGTTTTGATGGATGTCATAGTTAAAAGCAAATGTTTTTGGATGCAATATGTGTTGATGTCTATGCACATTACAATGGGATATATAGTGAACATTCTAACTATAGATTATAGAGTATGACCTAATTTACGTGTAAAAGCGTTTCTATAAACGTCTACGCGTTACGTGGCGCACTATTCCTCAATTTTATAAGTCCATGATATTATCGTTTGCTTAAGATTCAAACTTGCAACCTTTTGTGGAAAAAAAAATTAAACATAATTTCATTAAAAAAATATATTCTGTAATAATTAATTGTTATTCACACAATAATTCGGGGCATCGTGTGCCCAGATACCAATTTTGAGTTGGAAGGTGATGATACAGGTCGCAAGTTGCGACAATATTTATTTGTCGCAATCTTACGTGTCGGAATTTAATTGATACATATAGGCGCCACGTAGGTTATGGGTCATCGGAATATTTTTACTATGAAAATATGTAAATAAGATATTCGATATAAAGAAGGAAACAAATTAGAATATTATGATTTTCCTACATTTTTTTAAACATATATAATAGATATACGTTAAATATTTTAGTTTCCAAATTAAATCATGACACATAAGCACGTCATGTCATTATTATGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGAAAAAAGTAATACGACGTGTAAAATTAAGCATAAGAAAAAACAAAATAAAAGGGAGGTTGTTACGGTGACTTTCTGTGTCACTCCTACAACAAAATCGAAATTTGTGAGTAAGCAAACCATTTTCTGGAGAGAAAAACTTTTTACAGAGGAAAATTTAAATTAAAAATAAAATAAGTAAAAGCCCTCTTCTCCTCATCAAGAGGAGTCCACATCTCCCCACTCCTTTTGAGAATACTCTTTTCATTTTTTTAATTCTTCCCAAAAATAAATTAAAATAAATAAAAAAATCAGTCTCAAATTCCTCAAATTTGCGTAGTTCATCACGCTCTTCATAACTTCTCTCTCCTCTCACTCTTTTCGTCTCTTCCCTCAGGTAACTGCTAACTACACCTTTTTCTACTTTTTTTTGTTGTTTTTATTTTAGGGTTTTGTGATGTATTTTTTATCACTGGAAATTGTTAATTACTTGTTGATAATTTTGATGTTATTTTCGGTTGATTTTTGTAGCAATTTCCGGTGCTTTTGCGCTGAATTTTTGAGCCATTTTTCGATTTTTGTGTTCATCAATTAACATTCTAAGCTCAAAATTAGTGACTGATACTTTTCTGGAATCTTCTGTTGAGGTATTATGGTTTGGATTTTTGAGGTTGAAGTTTGTGAGGATTTTTATTTCTTTCTGTATCTTAAATTGTGGACATTTTGCCGGTGCATAATTTTCTAAGTAGAAATGGAAGGAATCTTCAGTAAATTATTATCATGATTTTATTTTTATTTTAGTATATGTTGAGAATTGCAACTTGCTGTCGAAAAGGGGAGATTAAATTTGATGGCCAGGTTGATGATTGTAAGTTAAGGCCAAACAGTGGTGGAATGATTGTGTTTGTCTGACATTATAAAGTGTAGTGTTGTTGCTAGTATGAATTGGTGGAGGGAAATCGATGTGGAATTGTGTTAGTGGTTATTGATTTCGTAGTGGTCTTCTCACAAACTCGGACACTCCCAAAGAAACTGCCCAATTTTATGAATGTTTATAACCTTATAGGAGTGTATGAGAGGATGTCCAGTACTCCAGTGTATTCATGAACTTTTGGTGACTCCATGGATGTTGATTTTGTGGAAGGAATTGGGGCGGATTAAGTGGGAGGTGTGGACCTAGATCAGCGGATACTAGAAATCACTTCTGCAATATGTAGCTAAAGGTGGATTCTAGACTTGAATTTGATGTACAGTTTAAGTTATAGGCACAAAATGCTCGCTTATGTTTTCTCACTGAAATTTCTGTGTTGTGTTCTTGCTGGTTTCAAGCTGCTGGTTATTCTAATTTTTTGATTTGCTCTTTACTACAATTTCAGGCAGGTTTTCAAACAAGTCAATTCCTTGTCTAATTTGTCCACCAACTTCTAAAATCATTATATGAGCGATATGTCTGTCGTTGTTTCTGTCTTTATGACAATAATTTAGATGCATGAAGCTCTACCGATTCTTCCCCTTCCTAGGTTGAGCTTTCCTTTTTAGGATTTTTTGCTGTTATAGGAGTGCTATTTTCAGAAACGCATAATGGAGTTGAAATTCATTTTAGTCTTATTGCTTTTGTTTAGTATTAATTCCCGTTTGCCTGTTAATTCTTTTGACGTGTGGCAGTGGGAATTTGTCATGAAGACTTGAATTTTGAAGTACAAGAACTGGCCATGGGTGGTTGCTGTTGCTCTTCCAGAAAGTCTCAATTGCAAGGGACACCCGTGTATTACTATGTAAGTTAACTTTTAAAAGTTTTTCGTATATTACCATATAATGTTTTTTCTCTTATTTAACAAGAGTCCTTGTTGTCTATTGTTGGGATAAAGAGTTTGAGCCCTTTGAGGCACTTTGAGCTGAGCAGGAAGCCTATGGAGCAAACACAGATGATAACTGCTTTTGATCTCTTATGCTTTTACATGTAATCCCCTCGCTGTCTGACTCTTTTCGGACACTTTAATAGATATGCAGCTCAGTGAAAGGATGTTTAATTTCCATAAACTTATATGTTGGAGTGGCTTCCACGTATTTCGGGTCTGAACTATTTCTGGGAGCTGGCCTGTGGTTGCCTTTGCATCTTGTGCTACTTTCTCTTTGAAAGTGCTATAAGTGTCCCTCAAGTAGGCAAGTGTTTGCAGAAGTCTGCTTGTATTATGAGAAAATCTTACTTGAAATTGATCCTATGTTATACTGTGTGGTTGCCTTTTTTTCCAAGATAACCGTTTCAGTCCTTAAACTCTACATTTTATGGCCTGTGAATCGAAGTATTATTCCTCTAATCCTCTTAGAAGCCATTGGAGGGAGGGAGGGGGAGGGAGTAAACGCCTGTTTACTCTGGAAGGAAGGAGCTTTGTGTTTTCGTTTGTTCGCCCTGTCTTTGACTTCATTATCGTGTTGTACCTACACTTCAACTAACAACCGAAGTGTGTTCTAGTCAAGAGACTCAAGAGGCATAATCTGACAGCACTTTCAGCTGGCTTAAGGATATTGTATTCTGCAGCGTTGCTTTCCTGATTGTCATCCATAACTATGATGTTTGAGAGCTGAAATTTTCTTGAGTGGAAAAGGGAGGATTGTTAATCCTCATCCAATGAATTTCATCACAATATCGGCCTAGTTAGTGAAAACCTGCAGCCTGCTCTCTGTCAATATCAGAATACTGTCGTTAATTGGTTTTCTTATTTGCATGAATTTCTCTGTCAACATAGCATTAGCAATTTAGCTTCATGTTTATTCCCTGGTTTGTTTTTAAAGGATCCCTTCCGAATAAAAAATTGTTCATGTGTTTTAGCATGCTAATAGTTTCAACTAGGCAGGGGTAAAATTTTGTTGAGTGTTGATTTTGCTAGGAACTGTTTTTGTCGTGGTTTTGGTTGTCGGAGCACACATTTGAACTGCTATATAGGATGCTTACTTGTTCATTCTCTTTCATGCAGTGTCCCCCATCTTTGGATGAGCAGAATAACTTCAGAGCATACCGTGGAGCAGCCAATGGGCTGTCAACAGGGCTTCTGGTTGGACTAAATCTGGACACATCAAGCCCTGATACTTTCAGACCTCCTCCTGCACCTATTCCTTTTAATGTGCTTTTTGGGCGCCCCCAGACTCCACTTCGTACTCTTGGATGCCAAGGACCTAAATGTGATGCAACGAAACAGTCCAAACCTGCAGCTGTTGGAGAGATTGCTGGTGCTGATGGCTCTAATAAATTGATTTCTGGTGGTCATGTTGGGAAATCAGAAGGAAAAACCCTTGCTGACATTTTGCTTGCTTCACCAACAAAGTCTGATGTAGAAATCTCAAAATCGTCCGAGGCTTATGCCACAGAGGAAGAGGATGCCTGTCCTATCTGTCTGGAAGGTGTGAGATTTTCCACTTCAGACTGTCGCACTGTATTGGTATTTGTTCCTGTATTTTATCTCACTGATGAACTTCTTGTGCAGAATATGACACTGACAACCCTAAAATGGTCACAAATTGTGAGCATGATTTTCACCTGTCATGTCTTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCAGTTTGTGATAAGGTCAGTATATATAGAGTAGATACTAGATAGCATCACTTTCATTACCAACGGTATTTTTTTCAAAGAGTTGATAACTGATATGTTTTCTTTCCCTTGTTATTCTTTTTTGACTTTCCGGTGAGTGTCAGTCACATTGAATACATTCTTTCAATTAAAGAAAGAATGACTTTTTGTTGTAGGCATTTTAAAACAGTGATGTAATGTATTGTCAAGCATTCTTTTGATTTCTTCATGTACCCTTTATCTCAGGCTTAGTTGCTCTACCCCCTTTCCGAGTTTACCACCCGACCTTTCCTCTTCCATATTTTACCGGACTTATTGGATAAATTAATCGGATTTTTTTGAAGAGCCAGTCCGTTTCAGTTATGGTTGACTTTACCCTTGGGTATTATTCTGTGATGTCACGATAAACTCATAAAAGTTACTGATACTTGTCATATTGGCTTTGACCGTTATCGATATTGTATCGGGCATATTGGCTCTTTAATCATATTGACCATATTGATTTGACAAGTTGAATAAAACATGATCTGGGGAGTGAGTGGGTCTAGCCTGTTGGTGAGTTCTGCAAAGTCACTATCTATTCATGTCATTACGCAAGTGCTCCAACTTAAAACAGTGTATTGGGGATTAGATGTGCACATCCTTAGTGGTGGTACCCTGTTCCTACAATTACAAAGAGGTTGTTTGCAATATAGCCTTGATCTGTGAGGTGAACAAGTGGCTTACTACTTTACAAGATAAAATAATTGACTACACATTTAATTTAGGTCTTCGGAATCTGAAGTTGAAAGTTTGCCTGTTAGAGGCTCTATTTACTATATTTGGAATTAAGCAATTGGCGAAGTTTGTAGTTGATGTAAAACTGTAATTCCTTTTTTTTCCCTTCACGATTGCGAATGATGCTTTAAGCACTAACTGCTGAGATATGTGCTTTTTCTTTTTCTTTATTGGTGCTACTGAACTTGACATTTATGATTATTCATGAAACAGGAAATGATATTTGATCACCCTGATGATCAGAACTAAGAAATTCCCTTGATGAACAGAGCTAGTCGTTTATTCCAAATGTTTGCTGATCAGTAAACCAAATGTGAATGGGGTTATATGTTTCAGCGACGTCTCAGTTTCTAATTTGCTGACACAACATGTGGCTTAGTAAGGTTCAACGTCGTCATTCCATTTAAAGTCTGGTTTGCTGAAGTCTCCTGCACTTATCTCTGATTCTATGTATCAGTGACTTGGAAAGTTGTCTGCTTCTTGTCAAAGAATGAGGACGAGATGCGGGTTAAGGATTCTGATGTATTCACACGCTACGTTTTGGAACTGCGAAAGGGATGCAATGGTTAGCACTCGCCTTCCGGTCTATATTATTTCCCGAATTCTACTTACATGTACATAATTTTCCTCTTTCCTTCTTTGTGTCCCTTCTTTTGGTGGTGTTGGCTTCCCCTCTTTCTCCATTTTATTTGTCCTCCCTACGGCCATACCTCGTCTTTAATAGGTTGTTATCTTTTTCATCAAAGTTGCACATTCAATTGGTGCATTTGTGTACTTTTGCATGGTTTCACAAAAGAATTTCTTTTTTTTCAGGAAAACATTTTTTTTTAGTAAAGTCAGTGCTCATTGTCACTGAGTTCTGGTCAGTATACAAAAATGTCAACAGTGAGTTTATTCTACCTTCACACTCCTATGTTGATGAATCTTATTTTTTTATCAATTCCATGCCCTTCTGTGATCTCTAAGCATAAATGTCCAACTAGTGTCAAGTTTAAATTAGTTGGTGCGCTCATTTCATACTCGGTCTACTTAATGAGTTATTGATAAGCGATTTGATTAGCATGTGATATGCCGCCCTCATCTCTCGTAGCATATACCCAGGTTTCAGGCACACACCCCTCTCCCATATTGAGATAGGGAGCTGTGGACTGTCGTCACGTTACTTTCAGAACCTCATGCCGACAGTCCTTTCTTTGTTTAAGGGGGAAGTAAGTGAGTTTTTTCCATGTTTGATTAAATTTCTTTCCCTCAATTATTTTCCTTCTGTTTTTCCTTTTTACCCTGTTGAGAGTATATAATTTAGAGCATTAAAGGGAATAAATACGAATGTTGTGAAATCTATGATAGTATGATGAATATTTTGACTATATAAGAATATGTTGCTGTCGTTCCAACATATTTCGGCCCATTTGACATTGTTATAAAGAATCCCATAATTGCCTTGTATATTATTCCGTATTCACCATCTTTTCAAGAAAAAAAGGACTGCATCACATGTTGACATATTGGTGATGTAAAATAAAATAGGGCATTACAAATAAACTGCAGATTTACATTTATATTAGCCGCATTACACGTATACTAAGTGGACAATCTTTATGGAAGGAGAAAGTATGGATTGTTTGCGAATATTAGTACGGAGTAGAAGATGGGTAGGGTATGAGACTATGAGATGGTGCATGGTTTTCAAGTGCCTTGACTTTTGGGCTCATATTTTGGCTATTATTAGAAAATGACAAAGTTTATGGTGGGGAGTTTCACCTGTTTTTTTCCCAAAAGTTGGTTGCGTTACATGCATAATTGCATTGCCCCTCTCATAAGTGTGAGAAGATGAATGTAAAGTTGTAAAGTTGTAAACCCAATCCCATTTGCTTGGATGTCACAATCCATGCCAAACTATGTATGGACTCTATTCATTTCCTTATTACGTGTCTTTGTAAATTTGAT

mRNA sequence

ATGTCTCAAATTCCTCAAATTTGCGTAGTTCATCACGCTCTTCATAACTTCTCTCTCCTCTCACTCTTTTCGTCTCTTCCCTCAGTGGGAATTTGTCATGAAGACTTGAATTTTGAAGTACAAGAACTGGCCATGGGTGGTTGCTGTTGCTCTTCCAGAAAGTCTCAATTGCAAGGGACACCCGTGTATTACTATTGTCCCCCATCTTTGGATGAGCAGAATAACTTCAGAGCATACCGTGGAGCAGCCAATGGGCTGTCAACAGGGCTTCTGGTTGGACTAAATCTGGACACATCAAGCCCTGATACTTTCAGACCTCCTCCTGCACCTATTCCTTTTAATGTGCTTTTTGGGCGCCCCCAGACTCCACTTCGTACTCTTGGATGCCAAGGACCTAAATGTGATGCAACGAAACAGTCCAAACCTGCAGCTGTTGGAGAGATTGCTGGTGCTGATGGCTCTAATAAATTGATTTCTGGTGGTCATGTTGGGAAATCAGAAGGAAAAACCCTTGCTGACATTTTGCTTGCTTCACCAACAAAGTCTGATGTAGAAATCTCAAAATCGTCCGAGGCTTATGCCACAGAGGAAGAGGATGCCTGTCCTATCTGTCTGGAAGAATATGACACTGACAACCCTAAAATGGTCACAAATTGTGAGCATGATTTTCACCTGTCATGTCTTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCAGTTTGTGATAAGGAAATGATATTTGATCACCCTGATGATCAGAACTAAGAAATTCCCTTGATGAACAGAGCTAGTCGTTTATTCCAAATGTTTGCTGATCAGTAAACCAAATGTGAATGGGGTTATATGTTTCAGCGACGTCTCAGTTTCTAATTTGCTGACACAACATGTGGCTTAGTAAGGTTCAACGTCGTCATTCCATTTAAAGTCTGGTTTGCTGAAGTCTCCTGCACTTATCTCTGATTCTATGTATCAGTGACTTGGAAAGTTGTCTGCTTCTTGTCAAAGAATGAGGACGAGATGCGGGTTAAGGATTCTGATGTATTCACACGCTACGTTTTGGAACTGCGAAAGGGATGCAATGGTTAGCACTCGCCTTCCGGTCTATATTATTTCCCGAATTCTACTTACATGTACATAATTTTCCTCTTTCCTTCTTTGTGTCCCTTCTTTTGGTGGTGTTGGCTTCCCCTCTTTCTCCATTTTATTTGTCCTCCCTACGGCCATACCTCGTCTTTAATAGGTTGTTATCTTTTTCATCAAAGTTGCACATTCAATTGGTGCATTTGTGTACTTTTGCATGGTTTCACAAAAGAATTTCTTTTTTTTCAGGAAAACATTTTTTTTTAGTAAAGTCAGTGCTCATTGTCACTGAGTTCTGGTCAGTATACAAAAATGTCAACAGTGAGTTTATTCTACCTTCACACTCCTATGTTGATGAATCTTATTTTTTTATCAATTCCATGCCCTTCTGTGATCTCTAAGCATAAATGTCCAACTAGTGTCAAGTTTAAATTAGTTGGTGCGCTCATTTCATACTCGGTCTACTTAATGAGTTATTGATAAGCGATTTGATTAGCATGTGATATGCCGCCCTCATCTCTCGTAGCATATACCCAGGTTTCAGGCACACACCCCTCTCCCATATTGAGATAGGGAGCTGTGGACTGTCGTCACGTTACTTTCAGAACCTCATGCCGACAGTCCTTTCTTTGTTTAAGGGGGAAGTAAGTGAGTTTTTTCCATGTTTGATTAAATTTCTTTCCCTCAATTATTTTCCTTCTGTTTTTCCTTTTTACCCTGTTGAGAGTATATAATTTAGAGCATTAAAGGGAATAAATACGAATGTTGTGAAATCTATGATAGTATGATGAATATTTTGACTATATAAGAATATGTTGCTGTCGTTCCAACATATTTCGGCCCATTTGACATTGTTATAAAGAATCCCATAATTGCCTTGTATATTATTCCGTATTCACCATCTTTTCAAGAAAAAAAGGACTGCATCACATGTTGACATATTGGTGATGTAAAATAAAATAGGGCATTACAAATAAACTGCAGATTTACATTTATATTAGCCGCATTACACGTATACTAAGTGGACAATCTTTATGGAAGGAGAAAGTATGGATTGTTTGCGAATATTAGTACGGAGTAGAAGATGGGTAGGGTATGAGACTATGAGATGGTGCATGGTTTTCAAGTGCCTTGACTTTTGGGCTCATATTTTGGCTATTATTAGAAAATGACAAAGTTTATGGTGGGGAGTTTCACCTGTTTTTTTCCCAAAAGTTGGTTGCGTTACATGCATAATTGCATTGCCCCTCTCATAAGTGTGAGAAGATGAATGTAAAGTTGTAAAGTTGTAAACCCAATCCCATTTGCTTGGATGTCACAATCCATGCCAAACTATGTATGGACTCTATTCATTTCCTTATTACGTGTCTTTGTAAATTTGAT

Coding sequence (CDS)

ATGTCTCAAATTCCTCAAATTTGCGTAGTTCATCACGCTCTTCATAACTTCTCTCTCCTCTCACTCTTTTCGTCTCTTCCCTCAGTGGGAATTTGTCATGAAGACTTGAATTTTGAAGTACAAGAACTGGCCATGGGTGGTTGCTGTTGCTCTTCCAGAAAGTCTCAATTGCAAGGGACACCCGTGTATTACTATTGTCCCCCATCTTTGGATGAGCAGAATAACTTCAGAGCATACCGTGGAGCAGCCAATGGGCTGTCAACAGGGCTTCTGGTTGGACTAAATCTGGACACATCAAGCCCTGATACTTTCAGACCTCCTCCTGCACCTATTCCTTTTAATGTGCTTTTTGGGCGCCCCCAGACTCCACTTCGTACTCTTGGATGCCAAGGACCTAAATGTGATGCAACGAAACAGTCCAAACCTGCAGCTGTTGGAGAGATTGCTGGTGCTGATGGCTCTAATAAATTGATTTCTGGTGGTCATGTTGGGAAATCAGAAGGAAAAACCCTTGCTGACATTTTGCTTGCTTCACCAACAAAGTCTGATGTAGAAATCTCAAAATCGTCCGAGGCTTATGCCACAGAGGAAGAGGATGCCTGTCCTATCTGTCTGGAAGAATATGACACTGACAACCCTAAAATGGTCACAAATTGTGAGCATGATTTTCACCTGTCATGTCTTCTTGAGTGGATGGAAAGAAGTGATTCCTGTCCAGTTTGTGATAAGGAAATGATATTTGATCACCCTGATGATCAGAACTAA

Protein sequence

MSQIPQICVVHHALHNFSLLSLFSSLPSVGICHEDLNFEVQELAMGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTFRPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVGKSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01680.1	Spo01680.1	mRNA

Homology

[Close]

BLAST of Spo01680.1 vs. NCBI nr
Match: gi|902178847|gb|KNA09229.1| (hypothetical protein SOVF_155420 [Spinacia oleracea])

HSP 1 Score: 441.8 bits (1135), Expect = 8.000e-121
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH
Sbjct: 121 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           LSCLLEWMERSDSCPVCDKEMIFDHPDDQN
Sbjct: 181 LSCLLEWMERSDSCPVCDKEMIFDHPDDQN 210

[Close]

BLAST of Spo01680.1 vs. NCBI nr
Match: gi|731311565|ref|XP_010670083.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 373.6 bits (958), Expect = 2.700e-100
Identity = 180/212 (84.91%), Postives = 189/212 (89.15%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSL+EQ N RAYRG A+GLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLEEQENLRAYRGTASGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTP+ T G QG KCD  K SKPAA+G+  G D  +KLISG HVG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPIHTHGSQGQKCDTVKHSKPAAIGD--GTDCIDKLISGNHVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAY--ATEEEDACPICLEEYDTDNPKMVTNCEHD 224
           KSEGKTLADILLASPTKSDVEI+KSSE Y    EEEDACPICLEEYD DNPKMVT+CEHD
Sbjct: 121 KSEGKTLADILLASPTKSDVEITKSSETYGLVAEEEDACPICLEEYDADNPKMVTSCEHD 180

Query: 225 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           FHLSCLLEWMERSD+CPVCDKEMIFD PDDQN
Sbjct: 181 FHLSCLLEWMERSDACPVCDKEMIFDQPDDQN 210

[Close]

BLAST of Spo01680.1 vs. NCBI nr
Match: gi|559148718|gb|AHB08881.1| (RING finger protein 1 [Suaeda glauca])

HSP 1 Score: 373.2 bits (957), Expect = 3.500e-100
Identity = 178/212 (83.96%), Postives = 191/212 (90.09%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSL+EQ N RAYRG A GLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLEEQENLRAYRGTAPGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTPLRTLG QGPKCDA K+SKPA VGE  GA+GS+  I    VG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPLRTLGSQGPKCDADKESKPANVGENTGANGSDLPIPVDRVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAY--ATEEEDACPICLEEYDTDNPKMVTNCEHD 224
           K+EG+TLADILLASPTKSDVE+SK +EAY    E+ED+CPIC EEYD+DNPKMVT+C+HD
Sbjct: 121 KAEGRTLADILLASPTKSDVELSKPTEAYELVPEDEDSCPICFEEYDSDNPKMVTSCDHD 180

Query: 225 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN
Sbjct: 181 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 212

[Close]

BLAST of Spo01680.1 vs. NCBI nr
Match: gi|720063508|ref|XP_010275665.1| (PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Nelumbo nucifera])

HSP 1 Score: 224.9 bits (572), Expect = 1.500e-55
Identity = 111/209 (53.11%), Postives = 147/209 (70.33%), Query Frame = 1


		  
Query: 45  MGG--CCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPD 104
           MGG  CCCSSR+SQL GTP+ YYCP +L+E+ +   ++GA   LSTG+LV  NL TSSPD
Sbjct: 1   MGGCCCCCSSRRSQLDGTPICYYCPQALEERESLTVHQGATPALSTGVLVNANLQTSSPD 60

Query: 105 TFRPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGH 164
           T+ PPPAP+P++V  GRP+TP  T      K +  + +    V E+  + G+  L++   
Sbjct: 61  TYCPPPAPLPYDVDLGRPETPPSTQESSANKSE-LQTTNSETVQEMLISSGAETLVACES 120

Query: 165 VGKSEGKTLADILLASPTKSDVEISKSSEAY--ATEEEDACPICLEEYDTDNPKMVTNCE 224
           + +S+ K     L +SP +SDVE+SK SEA   ATEEED CP CLEEYD  NP+++T CE
Sbjct: 121 LKESDCKGETKSLPSSPKESDVELSKLSEAIISATEEEDVCPTCLEEYDEQNPRIITKCE 180

Query: 225 HDFHLSCLLEWMERSDSCPVCDKEMIFDH 250
           H FHL+C+LEWMERSD+CPVCD+EMIF+H
Sbjct: 181 HHFHLACILEWMERSDTCPVCDQEMIFNH 208

[Close]

BLAST of Spo01680.1 vs. NCBI nr
Match: gi|566203225|ref|XP_002320810.2| (hypothetical protein POPTR_0014s08290g [Populus trichocarpa])

HSP 1 Score: 219.2 bits (557), Expect = 8.500e-54
Identity = 106/202 (52.48%), Postives = 135/202 (66.83%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRK  L GTPVYYYCPP+L+E  +  ++ GAA+  + GLLV L+L+TS+PDTF
Sbjct: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEEHGSLTSHNGAASAFTAGLLVELHLNTSTPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAP+P++V+ G PQ+P                    +V E         L +   + 
Sbjct: 61  RPPPAPLPYDVILGCPQSPF-----------------SESVQETISRGSFGTLATCEDLD 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           + + +T A  LL SP KS+V       A ATEEEDACPICLEEYD +NPK +TNCEH FH
Sbjct: 121 ELDCETQASSLLVSPRKSEVTKLHEPVASATEEEDACPICLEEYDLENPKHITNCEHHFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMI 247
           LSC+LEWMERSD+CP+CD+E+I
Sbjct: 181 LSCILEWMERSDTCPICDQEVI 185

[Close]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPP4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155420 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 5.600e-121
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH
Sbjct: 121 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           LSCLLEWMERSDSCPVCDKEMIFDHPDDQN
Sbjct: 181 LSCLLEWMERSDSCPVCDKEMIFDHPDDQN 210

[Close]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D880_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g004370 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.900e-100
Identity = 180/212 (84.91%), Postives = 189/212 (89.15%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSL+EQ N RAYRG A+GLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLEEQENLRAYRGTASGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTP+ T G QG KCD  K SKPAA+G+  G D  +KLISG HVG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPIHTHGSQGQKCDTVKHSKPAAIGD--GTDCIDKLISGNHVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAY--ATEEEDACPICLEEYDTDNPKMVTNCEHD 224
           KSEGKTLADILLASPTKSDVEI+KSSE Y    EEEDACPICLEEYD DNPKMVT+CEHD
Sbjct: 121 KSEGKTLADILLASPTKSDVEITKSSETYGLVAEEEDACPICLEEYDADNPKMVTSCEHD 180

Query: 225 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           FHLSCLLEWMERSD+CPVCDKEMIFD PDDQN
Sbjct: 181 FHLSCLLEWMERSDACPVCDKEMIFDQPDDQN 210

[Close]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Match: V5Q1I2_9CARY (RING finger protein 1 OS=Suaeda glauca PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.400e-100
Identity = 178/212 (83.96%), Postives = 191/212 (90.09%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRKSQLQGTPVYYYCPPSL+EQ N RAYRG A GLSTGLLVGLNLDTSSPDTF
Sbjct: 1   MGGCCCSSRKSQLQGTPVYYYCPPSLEEQENLRAYRGTAPGLSTGLLVGLNLDTSSPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAPIPFNVLFGRPQTPLRTLG QGPKCDA K+SKPA VGE  GA+GS+  I    VG
Sbjct: 61  RPPPAPIPFNVLFGRPQTPLRTLGSQGPKCDADKESKPANVGENTGANGSDLPIPVDRVG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAY--ATEEEDACPICLEEYDTDNPKMVTNCEHD 224
           K+EG+TLADILLASPTKSDVE+SK +EAY    E+ED+CPIC EEYD+DNPKMVT+C+HD
Sbjct: 121 KAEGRTLADILLASPTKSDVELSKPTEAYELVPEDEDSCPICFEEYDSDNPKMVTSCDHD 180

Query: 225 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 255
           FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN
Sbjct: 181 FHLSCLLEWMERSDSCPVCDKEMIFDHPDDQN 212

[Close]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Match: B9I8M1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s08290g PE=4 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 5.900e-54
Identity = 106/202 (52.48%), Postives = 135/202 (66.83%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRK  L GTPVYYYCPP+L+E  +  ++ GAA+  + GLLV L+L+TS+PDTF
Sbjct: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEEHGSLTSHNGAASAFTAGLLVELHLNTSTPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAP+P++V+ G PQ+P                    +V E         L +   + 
Sbjct: 61  RPPPAPLPYDVILGCPQSPF-----------------SESVQETISRGSFGTLATCEDLD 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           + + +T A  LL SP KS+V       A ATEEEDACPICLEEYD +NPK +TNCEH FH
Sbjct: 121 ELDCETQASSLLVSPRKSEVTKLHEPVASATEEEDACPICLEEYDLENPKHITNCEHHFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMI 247
           LSC+LEWMERSD+CP+CD+E+I
Sbjct: 181 LSCILEWMERSDTCPICDQEVI 185

[Close]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Match: A0A067K0K4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14374 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.900e-53
Identity = 104/204 (50.98%), Postives = 133/204 (65.20%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCCCSSRK  L GTPVYYYCPP+L+E  +   + GAA+  + GLL  LNL+TS+PDTF
Sbjct: 9   MGGCCCSSRKPHLHGTPVYYYCPPALEEHESLTTHNGAASAFTAGLLAELNLNTSTPDTF 68

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
           RPPPAP+P++++          LGC+       + S   +V E         L +   + 
Sbjct: 69  RPPPAPLPYDLV----------LGCR-------RSSDSESVRETVSGGSFETLATCEDLE 128

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           + + KTL   L  SP K+++     +    TEEEDACPICLEEYDT NPK VT CEH FH
Sbjct: 129 EPDCKTLESSLPVSPKKTEIAELDEAIVLTTEEEDACPICLEEYDTQNPKFVTKCEHHFH 188

Query: 225 LSCLLEWMERSDSCPVCDKEMIFD 249
           LSC+LEWMERSD+CP+CD+EM+FD
Sbjct: 189 LSCILEWMERSDTCPICDQEMVFD 195

[Close]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Match: RHB1A_ARATH (Probable E3 ubiquitin-protein ligase RHB1A OS=Arabidopsis thaliana GN=RHB1A PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.300e-48
Identity = 98/204 (48.04%), Postives = 129/204 (63.24%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCC SSRKS L GTPVYYYCP S +E        G  +  +TGLLV + L+TS PDTF
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
             P AP+P+++L GRPQ            C  ++  K    G ++G+     L +   +G
Sbjct: 61  CAP-APLPYDLLLGRPQ------------CTDSESIK----GRMSGSSFET-LATCEDLG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           +S+ KTLA  ++ SP KSD    +  +    EEED CPIC E+YD +NP++ T CEH+FH
Sbjct: 121 ESDCKTLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMIFD 249
           LSCLLEW+ERSD CP+CDKE++FD
Sbjct: 181 LSCLLEWIERSDRCPICDKEVVFD 186

[Close]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-17
Identity = 57/184 (30.98%), Postives = 86/184 (46.74%), Query Frame = 1


		  
Query: 80  RGAANGLSTGLLVGLNLDTSSP------DTFRPPPAPIPFNV--LFGRPQTPLRTLGCQG 139
           RG    L + +    ++ +SS       + FR  P P+P++    + R     R  G   
Sbjct: 47  RGETRSLPSSVQATASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSH 106

Query: 140 P-------KCDATKQSKPAAVGEIAGADGSNKLISGGHVGKSEGKTLADILLASPTKSDV 199
                   + D+   S+   VG    A+  NK        K E  + + + +       +
Sbjct: 107 SHEEVEPLRSDSDADSESFGVGGCKWAN--NKSTLSDKDSKEEYSSKSSLRILRSRSKSI 166

Query: 200 EISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSCPVCDKE 249
                +    +E+ED CP CLEEY ++NPK+VT C H FHLSC+ EWMERS++CPVC K 
Sbjct: 167 MADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 226

[Close]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.400e-10
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1


		  
Query: 198 EDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSCPVCDKEMIFDHPDDQ 254
           +DAC ICLE +   +P  +T+C+H++HL C+LEW +RS  CP+C + +    P  Q
Sbjct: 30  DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQ 85

[Close]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.700e-10
Identity = 30/87 (34.48%), Postives = 49/87 (56.32%), Query Frame = 1


		  
Query: 171 LADILLASPTKSDVEISKSSEAYATEEE----DACPICLEEYDTDNPKMVTNCEHDFHLS 230
           L+D    +P       S S+   A++++    DAC ICLE +   +P  VT+C+H++HL 
Sbjct: 12  LSDNSPFNPAIGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQ 71

Query: 231 CLLEWMERSDSCPVCDKEMIFDHPDDQ 254
           C++EW +RS  CP+C +  +   P  Q
Sbjct: 72  CIIEWSQRSKECPICWQLFVLRDPASQ 98

[Close]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.000e-7
Identity = 29/82 (35.37%), Postives = 41/82 (50.00%), Query Frame = 1


		  
Query: 173 DILLASPTKSDVEISKSSEAYATEEEDA---CPICLEEYDTDNPKMVTNCEHDFHLSCLL 232
           D  L  P    V  S        E+ DA   CP+CL E++         CEH FH +C+L
Sbjct: 48  DQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACIL 107

Query: 233 EWMERSDSCPVCDKEMIFDHPD 252
            W+ +++SCP+C  E+  D PD
Sbjct: 108 PWLGKTNSCPLCRHELPTDSPD 129

[Close]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Match: AT4G00335.1 (RING-H2 finger B1A)

HSP 1 Score: 192.6 bits (488), Expect = 3.000e-49
Identity = 98/204 (48.04%), Postives = 129/204 (63.24%), Query Frame = 1


		  
Query: 45  MGGCCCSSRKSQLQGTPVYYYCPPSLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTF 104
           MGGCC SSRKS L GTPVYYYCP S +E        G  +  +TGLLV + L+TS PDTF
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 105 RPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISGGHVG 164
             P AP+P+++L GRPQ            C  ++  K    G ++G+     L +   +G
Sbjct: 61  CAP-APLPYDLLLGRPQ------------CTDSESIK----GRMSGSSFET-LATCEDLG 120

Query: 165 KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFH 224
           +S+ KTLA  ++ SP KSD    +  +    EEED CPIC E+YD +NP++ T CEH+FH
Sbjct: 121 ESDCKTLASSVILSPRKSDFSKHQGLKILVDEEEDCCPICFEDYDVENPRLTTKCEHEFH 180

Query: 225 LSCLLEWMERSDSCPVCDKEMIFD 249
           LSCLLEW+ERSD CP+CDKE++FD
Sbjct: 181 LSCLLEWIERSDRCPICDKEVVFD 186

[Close]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Match: AT5G41350.1 (RING/U-box superfamily protein)

HSP 1 Score: 162.2 bits (409), Expect = 4.300e-40
Identity = 91/216 (42.13%), Postives = 131/216 (60.65%), Query Frame = 1


		  
Query: 45  MGGCCC--SSRKSQLQGTPVYYYCPPSLDEQNNFR-AYRGAANGLSTG-LLVGLNLDTSS 104
           MGGCCC  SSR++ +   P YYY P + +E+     A+   ++ +STG ++V  NL+TSS
Sbjct: 1   MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVVVVDTNLETSS 60

Query: 105 PDTFRPPPAPIPFNVLFGRPQTPLRTLGCQGPKCDATKQSKPAAVGEIAGADGSNKLISG 164
           PD + PPP P PF+V  G PQTP    G +    D  + S      + A  + + + + G
Sbjct: 61  PDAYIPPPLPTPFDVPIGIPQTP--ASGEEATCVDIREVSV-----DSANTESAQETVDG 120

Query: 165 GHVG--------KSEGKTLADILLASPTKSDVEISKSSEAYATEEEDACPICLEEYDTDN 224
             +G        +++ K   +I L S  + D ++SK+      EEED CPICLEEYD +N
Sbjct: 121 ITLGVPTTCSHKETDSKIQTEIDLESTEEIDPKLSKAVFIPIEEEED-CPICLEEYDIEN 180

Query: 225 PKMVTNCEHDFHLSCLLEWMERSDSCPVCDKEMIFD 249
           PK+V  C+H FHL+C+LEWMERS++CPVC+KEM+FD
Sbjct: 181 PKLVAKCDHHFHLACILEWMERSETCPVCNKEMVFD 208

[Close]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Match: AT5G15790.1 (RING/U-box superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.700e-20
Identity = 63/189 (33.33%), Postives = 89/189 (47.09%), Query Frame = 1


		  
Query: 69  SLDEQNNFRAYRGAANGLSTGLLVGLNLDTSSPDTFRPPPAPIPFNV---LFGRPQTPL- 128
           SL  +   R+   +    +  +    + D    +TF   P P+P++     F   +  L 
Sbjct: 43  SLFRRGETRSLPSSLQATNVSIATSTSYDNFMSNTFHSTPRPLPYDADPRYFRSRRDSLV 102

Query: 129 --RTLGCQGPKCDATKQSKPAAVGE----IAGADGSNKLISGGHVGKSEGKTLADILLAS 188
             R  G      +A      A V      + G+  +NKLI  G   K E    +  +L S
Sbjct: 103 SRRDKGSSHSHEEAEPLRSDADVDSESFSVEGSKWANKLIISGEDSKEEFSRSSRRILQS 162

Query: 189 PTKSDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSC 248
            T S    S       +++ED CP CLEEY ++NPK+VT C H FHLSC+ EWMERS++C
Sbjct: 163 RTMST---SNEGLYITSDDEDVCPTCLEEYISENPKIVTKCSHHFHLSCIYEWMERSENC 222

[Close]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Match: AT3G02290.1 (RING/U-box superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 7.200e-19
Identity = 57/184 (30.98%), Postives = 86/184 (46.74%), Query Frame = 1


		  
Query: 80  RGAANGLSTGLLVGLNLDTSSP------DTFRPPPAPIPFNV--LFGRPQTPLRTLGCQG 139
           RG    L + +    ++ +SS       + FR  P P+P++    + R     R  G   
Sbjct: 47  RGETRSLPSSVQATASITSSSSHDNFLSEAFRSTPRPLPYDADPRYFRSLVSRREKGSSH 106

Query: 140 P-------KCDATKQSKPAAVGEIAGADGSNKLISGGHVGKSEGKTLADILLASPTKSDV 199
                   + D+   S+   VG    A+  NK        K E  + + + +       +
Sbjct: 107 SHEEVEPLRSDSDADSESFGVGGCKWAN--NKSTLSDKDSKEEYSSKSSLRILRSRSKSI 166

Query: 200 EISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSCPVCDKE 249
                +    +E+ED CP CLEEY ++NPK+VT C H FHLSC+ EWMERS++CPVC K 
Sbjct: 167 MADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKV 226

[Close]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Match: AT4G23450.2 (RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-18
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1


		  
Query: 182 SDVEISKSSEAYATEEEDACPICLEEYDTDNPKMVTNCEHDFHLSCLLEWMERSDSCPVC 241
           +D E+ K       E  D CPICLEEY+ DNPK++T C HDFHL+C+L WMERS++CPVC
Sbjct: 144 TDFELKKQYR----EAIDECPICLEEYEIDNPKLLTKCGHDFHLACILAWMERSEACPVC 203

Query: 242 DKEMI 247
           DKE++
Sbjct: 204 DKELV 204

The following BLAST results are available for this feature:

BLAST of Spo01680.1 vs. NCBI nr
BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
BLAST of Spo01680.1 vs. TAIR (Arabidopsis)

BLAST of Spo01680.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902178847\|gb\|KNA09229.1\|	8.0e-121	100.	hypothetical protein SOVF_1554...	[more]
gi\|731311565\|ref\|XP_010670083.1\|	2.7e-100	84.9	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|559148718\|gb\|AHB08881.1\|	3.5e-100	83.9	RING finger protein 1 [Suaeda ...	[more]
gi\|720063508\|ref\|XP_010275665.1\|	1.5e-55	53.1	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|566203225\|ref\|XP_002320810.2\|	8.5e-54	52.4	hypothetical protein POPTR_001...	[more]

BLAST of Spo01680.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QPP4_SPIOL	5.6e-121	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D880_BETVU	1.9e-100	84.9	Uncharacterized protein OS=Bet...	[more]
V5Q1I2_9CARY	2.4e-100	83.9	RING finger protein 1 OS=Suaed...	[more]
B9I8M1_POPTR	5.9e-54	52.4	Uncharacterized protein OS=Pop...	[more]
A0A067K0K4_JATCU	2.9e-53	50.9	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo01680.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RHB1A_ARATH	5.3e-48	48.0	Probable E3 ubiquitin-protein ...	[more]
RING3_ARATH	1.3e-17	30.9	E3 ubiquitin-protein ligase At...	[more]
RHF2A_ARATH	4.4e-10	42.8	E3 ubiquitin-protein ligase RH...	[more]
RHF1A_ARATH	5.7e-10	34.4	E3 ubiquitin-protein ligase RH...	[more]
RN181_XENLA	2.0e-7	35.3	E3 ubiquitin-protein ligase RN...	[more]

BLAST of Spo01680.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G00335.1	3.0e-49	48.0	RING-H2 finger B1A	[more]
AT5G41350.1	4.3e-40	42.1	RING/U-box superfamily protein	[more]
AT5G15790.1	1.7e-20	33.3	RING/U-box superfamily protein	[more]
AT3G02290.1	7.2e-19	30.9	RING/U-box superfamily protein	[more]
AT4G23450.2	1.2e-18	58.4	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 200..241 score: 8.4
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 201..241 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 201..242 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 196..249 score: 4.9
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 74..124 score: 5.7E-62coord: 141..248 score: 5.7
None	No IPR available	PANTHER	PTHR22937:SF24	SUBFAMILY NOT NAMED	coord: 141..248 score: 5.7E-62coord: 74..124 score: 5.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 193..248 score: 9.66

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24435	0.70	Barchart \| Table
Spo20651	0.69	Barchart \| Table
Spo08654	0.68	Barchart \| Table
Spo01757	0.67	Barchart \| Table
Spo20837	0.67	Barchart \| Table
Spo19038	0.66	Barchart \| Table
Spo06272	0.66	Barchart \| Table
Spo11854	0.66	Barchart \| Table
Spo04300	0.65	Barchart \| Table
Spo23708	0.65	Barchart \| Table