Spo01575 (gene)

Overview
NameSpo01575
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 50019099 .. 50022189 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTCACTTAGCCCACTACTACCTTATCTCTCATGACAATTCTGACGCTTTCCAAGTCCAAATTCTTCACTTGGAAGTGCTCCAAGGGATCAACTACATTGCCGGCCATCAACCAAGGAGGGCGATTCACATGGTTAGTAGACACATTGCCACACTTCTCACTCCCCGATCAAGCTAGCACCAACATCTTTGACACTCTCCTCTCCCAATGCACCTATGTCCACCTTCCCTCGCACGCGATTTTCGACCATCATTAACCATTTCCGGGAACCATCGTCTGCATCCAACTTTGACAATCATTCTTTCACCGTTATGTAAGAAAAAAACATAGTCAAGTGAGACACCACAAGAATTTGTATCTTTAATGACAACTTAATAACGACGGGTCAAAAATCCCGTCGCAAAAGCCTTTTGTGATGGCACTAACAACCAAACAAAGACGGGAACAACCGTCGCAAATGTCTTTTAAGACGGGTTAACAACGGGATTTTCCATTTATGACGGCCCCCCTTTTATGACGGGTTCGCGACAGAAAATTCCGTCGTTAATTAACGATTATTGGCCTTTAACGACGGGATTTCCCGTCGTTAATGGTACAATTTCTTGTAGTGAGATATTGTAAAATCCGTACCAATGCGAGGTTTCCAAATATCCATTTTTTTAATATAATTTTTACTTATGCGCAATTAGAGATATTAATATCCAAAAAGACGTGATGGAATACGTGAAAAAAGAAATGATGTAATTAAGTATTTGAAACGGAGGTTACATGTATGACAAATTGACAATCAATAAAATTAATTAACATGCACGATTCATGTTTTTCCTTGGTTACGCAATCCCCTTGAGGCTTGAGTAGTTGAGTTGACATGCATAAATCAACTATTACAGTATTAGTGTATTACGTTGCAAAATTCTTGTAATAATATTTCCTTGGCCAAGTCATTTTCTTAGACCAAATAGTTATAACGACAGAATGTTTATGATGCCATCTAAACATTCCAAAAGAAGCTTCATATATAGACAACTTCCTTCGGAAACATACACTTCAGAATGAATTATTATCTAATGAATACTAAATTATGAAAAATGGCTATTAAAATAATGAATTTCCATGCCACTCTGCAAGGTGATTCATGGAGTATTATTCATTGGACGATGATATAGGTCGCAAGTTGCGACAACAAAATATTGTCGCAACCTTACGCGTCATCAATTTTATTTTACTATCAATTCAATATTTTTACTATGAAAATATATAAATAAGGTAGTCGATATAAATCAGGAAAAAAATATTTATTATATTTATAGTAAATTTATATTTCTTTTTATCTTATAAATTACAAATTAGAAAAATAAAAAATTATAATCTAATTATATATTTTTGTGTAATTAAAAAAATACATCGAATTAATTTAAAAAATACACTAATTGATCACATAATAATATATTTCATGTAAATAAAAATTCATAATTATACATTACTTTAAAATATTATTTTAATTTTAATGATTAGGTTAGTTTTAGGTTTTTTCATAGTAAAAAAAATCGTTTGTCTCTCCCGTCACACTACACAAAATCACGAGCCAGTAGTTTTCGAGTTCATCTAGAGAGGAAGAATTGCACTTGAACAATACTGATAGACTATTGAAGAACATTTTTTTTCCATATGGGGGGGGGGGGGGGGGGGNGGTAAATGGGAAAGATGAAGGTGGATGAAAAAACCCAATAATGGGGCGGAGGGTAAATGGAAAAGATGAAGGTGGATGAACAAAACCAATAATGACGCAATACTTTTCCAGTTTTCCTAATCTTTTATTTCCAATGCATGGTATTTCTTATTTTTCAAGTACTCCGTATAACTTGGTAAATGTACTTTTTATTTAATTTCCTGTATCATATAAATAATCAAAAGTATTAGAATTATTTTTTTGAAATGAAAATTACATTATTCAATTTGTAAATTGGAATATTAATTAAGATTTTTCTACCTTTTTTGTAACATGTATAATAGGTTATAAAATCTAAATATTTTAGTTTCCAAATACATTTATGACACATAAGCGTGCCATGTCACCACTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCAATTCCGTTATTCATTTATTAATGAAAATTAATTAGGAAGTGGGTTTTTTTTTTTCAGGTTTCAAGGATCCACAAAAGAAACTACTATATGTATACAGGGAAAAAAATTCAAGGAAGTGACGATAAGTATATTTAAAGCATGTTATTATTTTGCTAAATTAAACTCAATGCAATCTACGCATTGCATGATAAAATTTATTCACAAATGTTTTAGTTTGTACTTGTATGTTTGGTTAGTTTTTATAAGAAAAAAGGGTTACAGAAAATTTTAGTGTTGTTTATCAATACAAAACAAAAAAAACTTTATTTGATTAACTTGAGGAATTACCACTTGTAGGTAAATAGAAAAGAATTATTTCGTATTATATAACCATTTATCATATTCTCCATATACGGTCAATATTGAAATTTTGTAGTGAATATTGCAAACTTTTGAATATCACTCCTCAAAAACTTTTATCAACCGTACAAGGCTATTCCTACCTACCGATCTACAATAATAGAAGTTTCGTCGCAACTAGGAGCAAATGCCAAAGGCCATGGTACTAAATTATTAATGGTACTATCTACTATGGTAGTACATCAAATTAAGGCTCTTTGGCAGCCTGGCCCTAACATTGACTTGCTTAAGTAAAAAACAAAATTTGTAAATCGTAGACTTTTCAACTCAACAGTCAACACTGGACATTTTTATTTGATTGCAGTCAACGCTCAACCTCATCGTCACACCCTCCACAAAATTGAATACTCCGTACTTCTTATTTTTTAGGTTTTTCAATTCTGATTTTGAGTACTCTGTTCATTTCTTCTTTGTTGCATTGCATAGGTTTTGTGGTTTAACGACAAGCAACCCTTTTGCCCAAGAATTGTGATTAATTTATACTTTTTGCTTTGCCTTTTTCTCCCACGAAAACCCCTTTTTTCTCAAAATCTCACCTTTTTTTTTCTTTTTGTTTATCCTTTTTAA

mRNA sequence

ATGGTTGCTCACTTAGCCCACTACTACCTTATCTCTCATGACAATTCTGACGCTTTCCAAGTCCAAATTCTTCACTTGGAAGTGCTCCAAGGGATCAACTACATTGCCGGCCATCAACCAAGGAGGGCGATTCACATGGTTTTGTGGTTTAACGACAAGCAACCCTTTTGCCCAAGAATTGTGATTAATTTATACTTTTTGCTTTGCCTTTTTCTCCCACGAAAACCCCTTTTTTCTCAAAATCTCACCTTTTTTTTTCTTTTTGTTTATCCTTTTTAA

Coding sequence (CDS)

ATGGTTGCTCACTTAGCCCACTACTACCTTATCTCTCATGACAATTCTGACGCTTTCCAAGTCCAAATTCTTCACTTGGAAGTGCTCCAAGGGATCAACTACATTGCCGGCCATCAACCAAGGAGGGCGATTCACATGGTTTTGTGGTTTAACGACAAGCAACCCTTTTGCCCAAGAATTGTGATTAATTTATACTTTTTGCTTTGCCTTTTTCTCCCACGAAAACCCCTTTTTTCTCAAAATCTCACCTTTTTTTTTCTTTTTGTTTATCCTTTTTAA

Protein sequence

MVAHLAHYYLISHDNSDAFQVQILHLEVLQGINYIAGHQPRRAIHMVLWFNDKQPFCPRIVINLYFLLCLFLPRKPLFSQNLTFFFLFVYPF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01575.1Spo01575.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo01575.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01575.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01575.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01575.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009561 megagametogenesis
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0007276 gamete generation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0051302 regulation of cell division
biological_process GO:0034655 nucleobase-containing compound catabolic process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006260 DNA replication
biological_process GO:0006281 DNA repair
biological_process GO:0044265 cellular macromolecule catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005819 spindle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0044444 cytoplasmic part
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004527 exonuclease activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0016874 ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo056400.74Barchart | Table
Spo108950.73Barchart | Table
Spo041420.72Barchart | Table
Spo041040.72Barchart | Table
Spo018010.71Barchart | Table
Spo105000.71Barchart | Table
Spo209120.71Barchart | Table
Spo076850.71Barchart | Table
Spo156300.70Barchart | Table
Spo001140.70Barchart | Table
Spo132100.70Barchart | Table
Spo228940.69Barchart | Table
Spo001610.69Barchart | Table
Spo149420.69Barchart | Table
Spo163140.69Barchart | Table
Spo105850.69Barchart | Table
Spo002830.69Barchart | Table
Spo003620.69Barchart | Table
Spo007160.69Barchart | Table
Spo215040.69Barchart | Table
Spo010680.69Barchart | Table
Spo264270.69Barchart | Table
Spo103160.69Barchart | Table
Spo216000.68Barchart | Table
Spo273520.68Barchart | Table
Spo190350.68Barchart | Table
Spo044330.68Barchart | Table
Spo145890.68Barchart | Table
Spo055290.68Barchart | Table
Spo239350.68Barchart | Table
Spo020650.68Barchart | Table
Spo021780.68Barchart | Table
Spo173440.67Barchart | Table
Spo024780.67Barchart | Table
Spo038650.67Barchart | Table
Spo052690.67Barchart | Table
Spo057810.67Barchart | Table
Spo059280.67Barchart | Table
Spo087250.67Barchart | Table
Spo101950.67Barchart | Table
Spo111930.67Barchart | Table
Spo113840.67Barchart | Table
Spo121070.67Barchart | Table
Spo121550.67Barchart | Table
Spo174450.67Barchart | Table
Spo199860.67Barchart | Table
Spo225430.67Barchart | Table
Spo226660.67Barchart | Table
Spo233820.67Barchart | Table
Spo240920.67Barchart | Table
Spo104440.66Barchart | Table
Spo255730.66Barchart | Table
Spo201870.66Barchart | Table
Spo205440.66Barchart | Table
Spo063440.66Barchart | Table
Spo260130.66Barchart | Table
Spo262140.66Barchart | Table
Spo016290.66Barchart | Table
Spo035050.66Barchart | Table
Spo163610.66Barchart | Table
Spo108610.66Barchart | Table
Spo198950.66Barchart | Table
Spo235040.65Barchart | Table
Spo173860.65Barchart | Table
Spo091500.65Barchart | Table
Spo002050.65Barchart | Table
Spo060220.65Barchart | Table
Spo247360.65Barchart | Table
Spo248860.65Barchart | Table
Spo043730.65Barchart | Table
Spo229400.65Barchart | Table
Spo174970.65Barchart | Table