Spo01474 (gene)

Overview
NameSpo01474
Typegene
OrganismSpinacia oleracea (Spinach)
Description(Cold shock domain protein 2) (-1)
LocationSpoScf_02965 : 28336 .. 28977 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGCAAGGCGGAGAAAGGTTGAAGGGGTCGGTCAAGTGGTTTAATGACACCAAGGGCTTTGGTTTCATCACCCCCACTGAAGGCGGCGAAGATCTCTTCGTCCATCAGTCTTCCATCCGATCTGAGGGTTTCCGCAGCCTTGGTGACGGTGAGGAGGTTGAGTTCGTCATCTCTACCGGTGATGATGGTCGTACCAAGGCTGTTGATGTGACTGGTCCTAATGAAGGCCCTATCCAAGGCTCCACCCGTCGTTCTGGCGGTGGTAGCGGAGGAGGGGGTTACGGAGGTGGTGATGGTGGAGGATATAACGGAGGAGGAGGTGGTAGGAGATCTGGTGGAGGCGGTGGGTACGGAGGTGGAGGCGGTGGGTATGGTGGTGGTGGTGGTTATGGAGGAGGAGGCGGTGGGTATGGCGGAGGAGGTGGTGGTTACGGTGGAGGAGGCGGTGGTGGAAACTGTTATAGCTGTGGAGAGGCAGGTCACATGGCGAGGGAATGCCCATCAGGTGGTAGCGGCGGAGGTGGTGGAAGGTCGTACGGAGGTGGAGGCGGTCGTGGCGGAGGAGGTGGCGGAGGTAACTGCTACTCCTGTGGTGGTGATGGTCACTTTGCCAGGGATTGTCCCGCTGCTCGTTGA

mRNA sequence

ATGGAAGAGCAAGGCGGAGAAAGGTTGAAGGGGTCGGTCAAGTGGTTTAATGACACCAAGGGCTTTGGTTTCATCACCCCCACTGAAGGCGGCGAAGATCTCTTCGTCCATCAGTCTTCCATCCGATCTGAGGGTTTCCGCAGCCTTGGTGACGGTGAGGAGGTTGAGTTCGTCATCTCTACCGGTGATGATGGTCGTACCAAGGCTGTTGATGTGACTGGTCCTAATGAAGGCCCTATCCAAGGCTCCACCCGTCGTTCTGGCGGTGGTAGCGGAGGAGGGGGTTACGGAGGTGGTGATGGTGGAGGATATAACGGAGGAGGAGGTGGTAGGAGATCTGGTGGAGGCGGTGGGTACGGAGGTGGAGGCGGTGGGTATGGTGGTGGTGGTGGTTATGGAGGAGGAGGCGGTGGGTATGGCGGAGGAGGTGGTGGTTACGGTGGAGGAGGCGGTGGTGGAAACTGTTATAGCTGTGGAGAGGCAGGTCACATGGCGAGGGAATGCCCATCAGGTGGTAGCGGCGGAGGTGGTGGAAGGTCGTACGGAGGTGGAGGCGGTCGTGGCGGAGGAGGTGGCGGAGGTAACTGCTACTCCTGTGGTGGTGATGGTCACTTTGCCAGGGATTGTCCCGCTGCTCGTTGA

Coding sequence (CDS)

ATGGAAGAGCAAGGCGGAGAAAGGTTGAAGGGGTCGGTCAAGTGGTTTAATGACACCAAGGGCTTTGGTTTCATCACCCCCACTGAAGGCGGCGAAGATCTCTTCGTCCATCAGTCTTCCATCCGATCTGAGGGTTTCCGCAGCCTTGGTGACGGTGAGGAGGTTGAGTTCGTCATCTCTACCGGTGATGATGGTCGTACCAAGGCTGTTGATGTGACTGGTCCTAATGAAGGCCCTATCCAAGGCTCCACCCGTCGTTCTGGCGGTGGTAGCGGAGGAGGGGGTTACGGAGGTGGTGATGGTGGAGGATATAACGGAGGAGGAGGTGGTAGGAGATCTGGTGGAGGCGGTGGGTACGGAGGTGGAGGCGGTGGGTATGGTGGTGGTGGTGGTTATGGAGGAGGAGGCGGTGGGTATGGCGGAGGAGGTGGTGGTTACGGTGGAGGAGGCGGTGGTGGAAACTGTTATAGCTGTGGAGAGGCAGGTCACATGGCGAGGGAATGCCCATCAGGTGGTAGCGGCGGAGGTGGTGGAAGGTCGTACGGAGGTGGAGGCGGTCGTGGCGGAGGAGGTGGCGGAGGTAACTGCTACTCCTGTGGTGGTGATGGTCACTTTGCCAGGGATTGTCCCGCTGCTCGTTGA

Protein sequence

MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGGGGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGRSYGGGGGRGGGGGGGNCYSCGGDGHFARDCPAAR
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01474.1Spo01474.1mRNA


Homology
BLAST of Spo01474.1 vs. NCBI nr
Match: gi|731357795|ref|XP_010690398.1| (PREDICTED: glycine-rich protein 2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 255.4 bits (651), Expect = 8.900e-65
Identity = 179/214 (83.64%), Postives = 187/214 (87.38%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           MEEQGGER+KG+VKWFNDTKGFGFITP++GG+DLFVHQSSIRSEGFRSLGDGEEVEFVI+
Sbjct: 1   MEEQGGERMKGTVKWFNDTKGFGFITPSDGGDDLFVHQSSIRSEGFRSLGDGEEVEFVIT 60

Query: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120
           TGDDGRTKAVDVTGPNEG IQGSTRRSGGG GGGG      G Y GGGG    GGGGGYG
Sbjct: 61  TGDDGRTKAVDVTGPNEGSIQGSTRRSGGGGGGGG------GSYGGGGGSY--GGGGGYG 120

Query: 121 GGGGGYGGGGGYGGGGGGYGGG-GGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGR 180
           GGGG  GGGGG   GGGGYGGG GGGYGGG GGG+CYSCGE GHMARECP GGSGGGGG 
Sbjct: 121 GGGGYNGGGGGRRSGGGGYGGGSGGGYGGGSGGGSCYSCGEPGHMARECPRGGSGGGGGG 180

Query: 181 SYGGGGGRGGGGGGGNCYSCGGDGHFARDCPAAR 214
            YGGGGG GGGGGGG CYSCGG+GHFARDCPAAR
Sbjct: 181 RYGGGGGGGGGGGGGGCYSCGGEGHFARDCPAAR 206

BLAST of Spo01474.1 vs. NCBI nr
Match: gi|902211683|gb|KNA16795.1| (hypothetical protein SOVF_086000 [Spinacia oleracea])

HSP 1 Score: 222.6 bits (566), Expect = 6.400e-55
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS
Sbjct: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60

Query: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120
           TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG
Sbjct: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120

Query: 121 GGGGGYGGGGGYGGGGGGYGGGGGGYG 148
           GGGGGY GGGGYGGGGGGYGGGGGGYG
Sbjct: 121 GGGGGY-GGGGYGGGGGGYGGGGGGYG 146

BLAST of Spo01474.1 vs. NCBI nr
Match: gi|1009151133|ref|XP_015893389.1| (PREDICTED: glycine-rich protein 2-like [Ziziphus jujuba])

HSP 1 Score: 201.1 bits (510), Expect = 2.000e-48
Identity = 153/208 (73.56%), Postives = 168/208 (80.77%), Query Frame = 1

		  

Query: 7   ERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDGR 66
           ER+ G+VKWFND KGFGFITP++GGEDLFVHQSSIRSEGFRSLGDGE VEF I +  DGR
Sbjct: 3   ERVTGTVKWFNDQKGFGFITPSDGGEDLFVHQSSIRSEGFRSLGDGESVEFQIESDADGR 62

Query: 67  TKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGGGGGGY 126
           +KAVDVTGPNE P+QGS   SGG +GG G  GG GGGY GGG     GGGGGYGGG G  
Sbjct: 63  SKAVDVTGPNEAPVQGSRGGSGGAAGGRGSRGGGGGGYGGGGA---YGGGGGYGGGRGAR 122

Query: 127 GGGGGY--GGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGRSYGGG 186
           GGGGGY  GGGGGGYGGGGGGYGGGGGGG C+ CGE+GH+A++C  GG GGGGG  YGGG
Sbjct: 123 GGGGGYGGGGGGGGYGGGGGGYGGGGGGGACFKCGESGHIAKDCYQGGGGGGGGGRYGGG 182

Query: 187 --GGRGGGGGGGNCYSCGGDGHFARDCP 211
             GG  G GGGGNCY+CGG GHFAR+CP
Sbjct: 183 GSGGGAGAGGGGNCYNCGGSGHFARECP 207

BLAST of Spo01474.1 vs. NCBI nr
Match: gi|645260805|ref|XP_008235991.1| (PREDICTED: glycine-rich protein 2-like [Prunus mume])

HSP 1 Score: 194.9 bits (494), Expect = 1.400e-46
Identity = 150/212 (70.75%), Postives = 162/212 (76.42%), Query Frame = 1

		  

Query: 6   GERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDG 65
           GERL G+VKWFND KGFGFITP +GG+DLFVHQSSIR+EGFR+LGDGE VEF I +  DG
Sbjct: 2   GERLSGTVKWFNDQKGFGFITPNDGGDDLFVHQSSIRTEGFRTLGDGESVEFQIESDSDG 61

Query: 66  RTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGG-GYNGGGG----GRRSGGGGGYG 125
           RTKAVDVTGP EGP+QGS  R GGG GG G GGG GG G+NGGGG    GR   GGGGY 
Sbjct: 62  RTKAVDVTGPGEGPVQGS--RGGGGGGGRGRGGGGGGYGFNGGGGRGGGGRGGRGGGGY- 121

Query: 126 GGGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGG--GGG 185
                  GGGGYGGGGGGY GGGGGYGGGGGGG C+ CGE+GHMAR+C  GGSGG  GGG
Sbjct: 122 -------GGGGYGGGGGGY-GGGGGYGGGGGGGACFKCGESGHMARDCEQGGSGGGYGGG 181

Query: 186 RSYGGGGGRGGGGGGGNCYSCGGDGHFARDCP 211
             Y GGG  GGGG  G CY CG  GHFAR+CP
Sbjct: 182 GGYSGGGRGGGGGSSGGCYGCGESGHFARECP 202

BLAST of Spo01474.1 vs. NCBI nr
Match: gi|1021052719|gb|KZN10497.1| (hypothetical protein DCAR_003153 [Daucus carota subsp. sativus])

HSP 1 Score: 193.0 bits (489), Expect = 5.500e-46
Identity = 142/223 (63.68%), Postives = 150/223 (67.26%), Query Frame = 1

		  

Query: 4   QGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGD 63
           + G RLKGSVKWFNDTKGFGFITP EGGEDLFVHQSSI+S+GFRSL +GE VEFVI  G 
Sbjct: 3   EDGSRLKGSVKWFNDTKGFGFITPDEGGEDLFVHQSSIKSDGFRSLAEGESVEFVIENGS 62

Query: 64  DGRTKAVDVTGPNEGPIQGSTRRSGGGSG--GGGYGGGDGGGYNGGGGGRRSGGGGGYGG 123
           DGRTKAVDVTGP+   +QGS R  GGG G  GGGYGGG GG               GYGG
Sbjct: 63  DGRTKAVDVTGPDGASVQGSGRGGGGGGGRGGGGYGGG-GG---------------GYGG 122

Query: 124 GGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSG---GGGG 183
           GGGGYGGGGGY               GGGGGG CY CGE GHMAR+C +GG G   GGGG
Sbjct: 123 GGGGYGGGGGY---------------GGGGGGGCYKCGENGHMARDCDNGGGGGGYGGGG 182

Query: 184 RSYGGGGGRG-----------GGGGGGNCYSCGGDGHFARDCP 211
             YGGGGG G           GGGGGG CY CG DGHFARDCP
Sbjct: 183 GGYGGGGGYGGGRGGGRGGGRGGGGGGGCYQCGEDGHFARDCP 194

BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEM7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g214350 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.200e-65
Identity = 179/214 (83.64%), Postives = 187/214 (87.38%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           MEEQGGER+KG+VKWFNDTKGFGFITP++GG+DLFVHQSSIRSEGFRSLGDGEEVEFVI+
Sbjct: 1   MEEQGGERMKGTVKWFNDTKGFGFITPSDGGDDLFVHQSSIRSEGFRSLGDGEEVEFVIT 60

Query: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120
           TGDDGRTKAVDVTGPNEG IQGSTRRSGGG GGGG      G Y GGGG    GGGGGYG
Sbjct: 61  TGDDGRTKAVDVTGPNEGSIQGSTRRSGGGGGGGG------GSYGGGGGSY--GGGGGYG 120

Query: 121 GGGGGYGGGGGYGGGGGGYGGG-GGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGR 180
           GGGG  GGGGG   GGGGYGGG GGGYGGG GGG+CYSCGE GHMARECP GGSGGGGG 
Sbjct: 121 GGGGYNGGGGGRRSGGGGYGGGSGGGYGGGSGGGSCYSCGEPGHMARECPRGGSGGGGGG 180

Query: 181 SYGGGGGRGGGGGGGNCYSCGGDGHFARDCPAAR 214
            YGGGGG GGGGGGG CYSCGG+GHFARDCPAAR
Sbjct: 181 RYGGGGGGGGGGGGGGCYSCGGEGHFARDCPAAR 206

BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBD3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086000 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.500e-55
Identity = 146/147 (99.32%), Postives = 146/147 (99.32%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS
Sbjct: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60

Query: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120
           TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG
Sbjct: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYG 120

Query: 121 GGGGGYGGGGGYGGGGGGYGGGGGGYG 148
           GGGGGY GGGGYGGGGGGYGGGGGGYG
Sbjct: 121 GGGGGY-GGGGYGGGGGGYGGGGGGYG 146

BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Match: A0A0K9P8C9_ZOSMR (Cold shock domain-containing protein 4 OS=Zostera marina GN=ZOSMA_32G00500 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 9.400e-45
Identity = 151/213 (70.89%), Postives = 164/213 (77.00%), Query Frame = 1

		  

Query: 8   RLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDGRT 67
           R KG VKWFN TKGFGFITP +G EDLFVHQSSI+S+G+RSL +GE VEFV+S GDDGRT
Sbjct: 5   RSKGIVKWFNGTKGFGFITPEDGSEDLFVHQSSIKSDGYRSLAEGESVEFVVSAGDDGRT 64

Query: 68  KAVDVTGPNEGPIQGSTRRSGGGSG---GGGYGGGDGGGYNGGGGGRRSGGGGGYGGGGG 127
           KAVDVTGP+   +QG   R GGG G   GGGYGGG GGGY GGGG R   GGGG  GGGG
Sbjct: 65  KAVDVTGPDGASVQGDGGRGGGGGGYGGGGGYGGG-GGGYGGGGGYR--SGGGGRNGGGG 124

Query: 128 GYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGRSYGGG 187
           GYGGGGGYG      GGGGGGYGGGGGGG CY+CGE GHMARECP+GG GGGG    GGG
Sbjct: 125 GYGGGGGYG------GGGGGGYGGGGGGGGCYNCGEQGHMARECPTGG-GGGGRYGGGGG 184

Query: 188 GGR----GGGGGGGNCYSCGGDGHFARDCPAAR 214
           GGR    GGGGGGG CY+CG  GHFAR+C A +
Sbjct: 185 GGRYGGGGGGGGGGACYNCGEPGHFARECSAMK 207

BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Match: F6I111_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02130 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.400e-43
Identity = 151/213 (70.89%), Postives = 164/213 (77.00%), Query Frame = 1

		  

Query: 8   RLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDGRT 67
           R+ G+VKWFND KGFGFITP +GG+DLFVHQSSIRSEGFRSLG+GE VEFV+ + DDGRT
Sbjct: 3   RVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGRT 62

Query: 68  KAVDVTGPNEGPIQGSTRRSGG--GSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGGGGGG 127
           KAVDVTGP+  P+QGS    GG  G GGGGYGGG  GGY GGGGG    GGGG GGG GG
Sbjct: 63  KAVDVTGPDGNPVQGSRGGGGGRGGRGGGGYGGG--GGYGGGGGGYGYNGGGGRGGGRGG 122

Query: 128 YGGGGG------YGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMAREC--PSGGSGGGG 187
            GGGGG      YGGGG    GGGGGYGGGGGGG CY+CGE GH+AR+C   SGG GGGG
Sbjct: 123 RGGGGGGRSSGGYGGGG---YGGGGGYGGGGGGGACYNCGEEGHLARDCSQSSGGGGGGG 182

Query: 188 GRSYGGGGGRGGGGGGGNCYSCGGDGHFARDCP 211
             S GGGGG GGGGGGG CY CG  GHFAR+CP
Sbjct: 183 RYSGGGGGGGGGGGGGGGCYRCGEAGHFARECP 210

BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Match: A5BQ96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040408 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.000e-43
Identity = 148/225 (65.78%), Postives = 161/225 (71.56%), Query Frame = 1

		  

Query: 8   RLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDDGRT 67
           R+ G+VKWFND KGFGFITP +GG+DLFVHQSSIRSEGFRSLG+GE VEFV+ + DDGRT
Sbjct: 3   RVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGRT 62

Query: 68  KAVDVTGPNEGPIQGSTRRSGG-----------GSGGGGYGGGDGG-GYNGGGG--GRRS 127
           KAVDVTGP+  P+QGS    GG           G GGGGYGGG GG GYNGGGG  G R 
Sbjct: 63  KAVDVTGPDGNPVQGSRGGGGGRGGRGGGGYGGGGGGGGYGGGGGGYGYNGGGGRGGGRG 122

Query: 128 GGGGGYGG------GGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARE 187
           G GGG GG      GGGGYGGGGGYGG            GGGGGGG CY+CGE GH+AR+
Sbjct: 123 GRGGGGGGRSSGGYGGGGYGGGGGYGG------------GGGGGGGACYNCGEEGHLARD 182

Query: 188 C--PSGGSGGGGGRSYGGGGGRGGGGGGGNCYSCGGDGHFARDCP 211
           C   SGG GGGG  S GGGGG GGGGGGG CY CG  GHFAR+CP
Sbjct: 183 CSQSSGGGGGGGRYSSGGGGGGGGGGGGGGCYRCGEAGHFARECP 215

BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Match: GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.300e-42
Identity = 145/213 (68.08%), Postives = 160/213 (75.12%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           M E+ G+R KG+VKWF+D KGFGFITP +GGEDLFVHQS IRSEGFRSL +GE VEF + 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  TGDDGRTKAVDVTGPNEGPIQGSTRRSGGGS--GGGGYGGGDGG-GYNGGGGGRRSGGGG 120
           +G DGRTKAVDVTGP+   +QG     GGG   GGGGYGGG GG G  G GG R  GGG 
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGD 120

Query: 121 GYGGGGGGYGGGGGYGGGGGGYGGGGG-GYGGGGGGGNCYSCGEAGHMARECPSGGSGGG 180
           G  GGGGGYGGG  YGGGGGGYGGGGG G GG GGG  C+ CGE+GH AR+C   G GGG
Sbjct: 121 GGYGGGGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGG 180

Query: 181 GGRSYGGGGGRGGGGGGGNCYSCGGDGHFARDC 210
           GGR +GGG   GGGGGGG CY CG DGHFAR+C
Sbjct: 181 GGR-FGGG---GGGGGGGGCYKCGEDGHFAREC 209

BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Match: CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana GN=CSP2 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.300e-36
Identity = 132/219 (60.27%), Postives = 147/219 (67.12%), Query Frame = 1

		  

Query: 5   GGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDD 64
           GGER KGSVKWF+  KGFGFITP +GG+DLFVHQSSIRSEGFRSL   E VEF +   ++
Sbjct: 7   GGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNN 66

Query: 65  GRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGGG-G 124
            R KA+DV+GP+  P+QG+   SGGGS                     SGG GG+GGG G
Sbjct: 67  NRPKAIDVSGPDGAPVQGN---SGGGS---------------------SGGRGGFGGGRG 126

Query: 125 GGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSG-GGGGRSYG 184
           GG G GGGYGGGGGGYGG G   GGG GG +CY CGE GHMAR+C  GG G GGGG  YG
Sbjct: 127 GGRGSGGGYGGGGGGYGGRG---GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYG 186

Query: 185 ------------GGGGRGGGGGGGNCYSCGGDGHFARDC 210
                       GGGGRGGGGGGG+CYSCG  GHFARDC
Sbjct: 187 GGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDC 198

BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Match: CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana GN=CSP4 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.200e-34
Identity = 123/209 (58.85%), Postives = 140/209 (66.99%), Query Frame = 1

		  

Query: 5   GGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDD 64
           GG+R KG+VKWF+  KGFGFITP++GG+DLFVHQSSIRSEGFRSL   E VEF +   + 
Sbjct: 11  GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNS 70

Query: 65  GRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGG-GGGYGGGG 124
           GR KA++V+GP+  P+QG+   SGGG   GG GG  GGG  G GGGR  G  GGGYG   
Sbjct: 71  GRPKAIEVSGPDGAPVQGN---SGGGGSSGGRGGFGGGG--GRGGGRGGGSYGGGYG--- 130

Query: 125 GGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGG---SGGGGGRS 184
                           G G GG GGGGG  +C+ CGE GHMAREC  GG   SGGGGG  
Sbjct: 131 ----------------GRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGR 190

Query: 185 YGGGGGRGGGGGGGNCYSCGGDGHFARDC 210
           YG GGG GGGGGG +CYSCG  GHFARDC
Sbjct: 191 YGSGGGGGGGGGGLSCYSCGESGHFARDC 195

BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Match: CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana GN=CSP3 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.500e-19
Identity = 105/237 (44.30%), Postives = 123/237 (51.90%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           ME+Q   R  G V WF+D KG+GFITP +GGE+LFVHQSSI S+GFRSL  GE VE+ I+
Sbjct: 3   MEDQSAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIA 62

Query: 61  TGDDGRTKAVDVTGPNEGPI---QGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGG 120
            G DG+TKA++VT P  G +   + S+R SGG     G  G      +GG GG+  GGGG
Sbjct: 63  LGSDGKTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGG 122

Query: 121 GYGGGGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMAREC------PSG 180
           G                               GG G CY CG+ GH AR+C       SG
Sbjct: 123 G----------------------------RRSGGEGECYMCGDVGHFARDCRQSGGGNSG 182

Query: 181 GSGGGGGRSY----------------GG---GGGRGGGGGGGNCYSCGGDGHFARDC 210
           G GGGG   Y                GG   GGG G G GG  CY CGG GHFARDC
Sbjct: 183 GGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211

BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Match: CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.100e-13
Identity = 91/208 (43.75%), Postives = 112/208 (53.85%), Query Frame = 1

		  

Query: 2   EEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIST 61
           E+Q   R  G V WFN +KG+GFITP +G  +LFVHQSSI SEG+RSL  G+ VEF I+ 
Sbjct: 4   EDQSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQ 63

Query: 62  GDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGG 121
           G DG+TKAV+VT P  G ++      G G+  GG           GG G  + G  G+  
Sbjct: 64  GSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGG-----------GGSGCYNCGELGHIS 123

Query: 122 GGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGRSY 181
              G GGGGG            GG     GG  CY+CG+ GH AR+C S G+G   G + 
Sbjct: 124 KDCGIGGGGG------------GGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATK 179

Query: 182 GGGGGRGGGGGGGNCYSCGGDGHFARDC 210
           GG  G         CY+CG  GH ARDC
Sbjct: 184 GGNDG---------CYTCGDVGHVARDC 179

BLAST of Spo01474.1 vs. TAIR (Arabidopsis)
Match: AT4G38680.1 (glycine rich protein 2)

HSP 1 Score: 153.7 bits (387), Expect = 1.300e-37
Identity = 132/219 (60.27%), Postives = 147/219 (67.12%), Query Frame = 1

		  

Query: 5   GGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDD 64
           GGER KGSVKWF+  KGFGFITP +GG+DLFVHQSSIRSEGFRSL   E VEF +   ++
Sbjct: 7   GGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNN 66

Query: 65  GRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGGG-G 124
            R KA+DV+GP+  P+QG+   SGGGS                     SGG GG+GGG G
Sbjct: 67  NRPKAIDVSGPDGAPVQGN---SGGGS---------------------SGGRGGFGGGRG 126

Query: 125 GGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSG-GGGGRSYG 184
           GG G GGGYGGGGGGYGG G   GGG GG +CY CGE GHMAR+C  GG G GGGG  YG
Sbjct: 127 GGRGSGGGYGGGGGGYGGRG---GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYG 186

Query: 185 ------------GGGGRGGGGGGGNCYSCGGDGHFARDC 210
                       GGGGRGGGGGGG+CYSCG  GHFARDC
Sbjct: 187 GGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARDC 198

BLAST of Spo01474.1 vs. TAIR (Arabidopsis)
Match: AT2G21060.1 (glycine-rich protein 2B)

HSP 1 Score: 145.2 bits (365), Expect = 4.600e-35
Identity = 123/209 (58.85%), Postives = 140/209 (66.99%), Query Frame = 1

		  

Query: 5   GGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVISTGDD 64
           GG+R KG+VKWF+  KGFGFITP++GG+DLFVHQSSIRSEGFRSL   E VEF +   + 
Sbjct: 11  GGDRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNS 70

Query: 65  GRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGG-GGGYGGGG 124
           GR KA++V+GP+  P+QG+   SGGG   GG GG  GGG  G GGGR  G  GGGYG   
Sbjct: 71  GRPKAIEVSGPDGAPVQGN---SGGGGSSGGRGGFGGGG--GRGGGRGGGSYGGGYG--- 130

Query: 125 GGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGG---SGGGGGRS 184
                           G G GG GGGGG  +C+ CGE GHMAREC  GG   SGGGGG  
Sbjct: 131 ----------------GRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGR 190

Query: 185 YGGGGGRGGGGGGGNCYSCGGDGHFARDC 210
           YG GGG GGGGGG +CYSCG  GHFARDC
Sbjct: 191 YGSGGGGGGGGGGLSCYSCGESGHFARDC 195

BLAST of Spo01474.1 vs. TAIR (Arabidopsis)
Match: AT2G17870.1 (cold shock domain protein 3)

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-20
Identity = 105/237 (44.30%), Postives = 123/237 (51.90%), Query Frame = 1

		  

Query: 1   MEEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIS 60
           ME+Q   R  G V WF+D KG+GFITP +GGE+LFVHQSSI S+GFRSL  GE VE+ I+
Sbjct: 3   MEDQSAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIA 62

Query: 61  TGDDGRTKAVDVTGPNEGPI---QGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGG 120
            G DG+TKA++VT P  G +   + S+R SGG     G  G      +GG GG+  GGGG
Sbjct: 63  LGSDGKTKAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGG 122

Query: 121 GYGGGGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMAREC------PSG 180
           G                               GG G CY CG+ GH AR+C       SG
Sbjct: 123 G----------------------------RRSGGEGECYMCGDVGHFARDCRQSGGGNSG 182

Query: 181 GSGGGGGRSY----------------GG---GGGRGGGGGGGNCYSCGGDGHFARDC 210
           G GGGG   Y                GG   GGG G G GG  CY CGG GHFARDC
Sbjct: 183 GGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211

BLAST of Spo01474.1 vs. TAIR (Arabidopsis)
Match: AT4G36020.1 (cold shock domain protein 1)

HSP 1 Score: 75.9 bits (185), Expect = 3.400e-14
Identity = 91/208 (43.75%), Postives = 112/208 (53.85%), Query Frame = 1

		  

Query: 2   EEQGGERLKGSVKWFNDTKGFGFITPTEGGEDLFVHQSSIRSEGFRSLGDGEEVEFVIST 61
           E+Q   R  G V WFN +KG+GFITP +G  +LFVHQSSI SEG+RSL  G+ VEF I+ 
Sbjct: 4   EDQSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQ 63

Query: 62  GDDGRTKAVDVTGPNEGPIQGSTRRSGGGSGGGGYGGGDGGGYNGGGGGRRSGGGGGYGG 121
           G DG+TKAV+VT P  G ++      G G+  GG           GG G  + G  G+  
Sbjct: 64  GSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGG-----------GGSGCYNCGELGHIS 123

Query: 122 GGGGYGGGGGYGGGGGGYGGGGGGYGGGGGGGNCYSCGEAGHMARECPSGGSGGGGGRSY 181
              G GGGGG            GG     GG  CY+CG+ GH AR+C S G+G   G + 
Sbjct: 124 KDCGIGGGGG------------GGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATK 179

Query: 182 GGGGGRGGGGGGGNCYSCGGDGHFARDC 210
           GG  G         CY+CG  GH ARDC
Sbjct: 184 GGNDG---------CYTCGDVGHVARDC 179

The following BLAST results are available for this feature:
BLAST of Spo01474.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731357795|ref|XP_010690398.1|8.9e-6583.6PREDICTED: glycine-rich protei... [more]
gi|902211683|gb|KNA16795.1|6.4e-5599.3hypothetical protein SOVF_0860... [more]
gi|1009151133|ref|XP_015893389.1|2.0e-4873.5PREDICTED: glycine-rich protei... [more]
gi|645260805|ref|XP_008235991.1|1.4e-4670.7PREDICTED: glycine-rich protei... [more]
gi|1021052719|gb|KZN10497.1|5.5e-4663.6hypothetical protein DCAR_0031... [more]
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BLAST of Spo01474.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8EEM7_BETVU6.2e-6583.6Uncharacterized protein OS=Bet... [more]
A0A0K9RBD3_SPIOL4.5e-5599.3Uncharacterized protein OS=Spi... [more]
A0A0K9P8C9_ZOSMR9.4e-4570.8Cold shock domain-containing p... [more]
F6I111_VITVI1.4e-4370.8Putative uncharacterized prote... [more]
A5BQ96_VITVI3.0e-4365.7Putative uncharacterized prote... [more]
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BLAST of Spo01474.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GRP2_NICSY1.3e-4268.0Glycine-rich protein 2 OS=Nico... [more]
CSP2_ARATH2.3e-3660.2Cold shock protein 2 OS=Arabid... [more]
CSP4_ARATH8.2e-3458.8Cold shock domain-containing p... [more]
CSP3_ARATH2.5e-1944.3Cold shock domain-containing p... [more]
CSP1_ARATH6.1e-1343.7Cold shock protein 1 OS=Arabid... [more]
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BLAST of Spo01474.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT4G38680.11.3e-3760.2glycine rich protein 2[more]
AT2G21060.14.6e-3558.8glycine-rich protein 2B[more]
AT2G17870.11.4e-2044.3cold shock domain protein 3[more]
AT4G36020.13.4e-1443.7cold shock domain protein 1[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 153..211
score: 1.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 154..170
score: 1.8E-7coord: 195..210
score: 2.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 195..211
score: 1.2E-4coord: 154..170
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 155..170
score: 11.334coord: 196..210
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 145..212
score: 6.0
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 11..26
score: 1.3E-15coord: 32..41
score: 1.3E-15coord: 47..65
score: 1.3
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 10..74
score: 2.7
IPR011129Cold shock proteinSMARTSM00357csp_8coord: 10..75
score: 1.6
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 10..73
score: 2.6
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 7..74
score: 7.07
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 22..41
scor
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 1..210
score: 2.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression