Spo01398 (gene)

Overview
NameSpo01398
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
LocationSpoScf_04025 : 4845 .. 8822 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGAGGCAGTAATCAGGAACAAGCCAGGAATGGCTAGCGTGAAGGACATGCCTCTCCTTCAAGACGGTCCTCCACCTGGTGGTTTCGCTCCCGTCCGTTACGCCCGTCGTATCCCCACCAAGGGTCCCAGCGCTATTGCCATCTTCTTAACCACTTTCGGCGCTTTCGCTTGGGGTATGTACCAGGTTGGCGAGGGCAACAAGAAGCGCCGGTATTCTCTCTTTCTATCTCTTTTTTTTCCCTTTCTTTTGTAGATGAAGCTGGATCTTGTTGATTTTGCTTTGTTTAATCGCATTTGACTTTTTGGGGATATCTTGAATTGAAATTGATGGGTGGGTATACTGTGGATTTAAAAAATTGGTGCTTAAAGGCCTTCGATTGGCTGACATTTATGGGTTTTGATGTTTTTGTTAAATGGTGGTTTGGGATTGTTGCCGGGTTTTTGTTTGTGAGATTTAAGAGCTTATGAGAAGAAATGAAATTGAAATTTGGAGCTGAATGAGCTACATTTAGTTGATTTAACTTAGGGTTTTCTACTGAAACAAGGATATAGCCTTTGTAAGTTGTTGGTATGATAGGTGGGTTTGTTAAGTCATTTTTTGTCGTGTGAGGAAGGTTTTACAGGGTTAGGCTTTGGGTGTCGAACATGTTGAAGAATAAAGTTAATGTAGAATGGTTGATGTTGGCAAATGTTAAAATGGAGTTATGGAAAGGTTAATGTAAGGAATGCTAAAATGAAGAATAAGGTTAATGTAAGAATGCTAGATAAAATAGTACATGGATTTCGCGGTTAAGGTGATTAGGAAGTCTAGGCCAATGACTATTTTCTGTGTTATGATTGGGTGGAATGAAATGATTTCCATGAAGAAAGAACGTCTAAGAGATCGACCATAATCTGTGCATCATAATCTGTGGAATCTAGAAGTGGTTATCTAATATTCTAGGAAATGTCTTTCATATCAATCCCTGTGGAAGTGTGGCTATGTCCATAACTACACCCATTGTTGACAGTTTGCTTTACCATACCAATCTGATTTGAATGTGAAGTGAATGGTTGACCGGGGTCATCCTTGTAGTTGTAGAAGATTTGTTCTTGAAGAAGAGACATGATGAAGGCCTGAACCACCTGATGCTGACTGAGAATGGACATTCTCTTCCTCGCGTTGCTCTATGCCATTCCATTTCGTGATTATGTAAGGGCATAAATAATTCCGAGATCTTTCTTCTGGGGACTTAGTTATTTACAATGTAGTAGCCTTATTTGTTGGATTGACTCTCCCTTGGATGAATGAACGCCAGATTTGATCTTCTTTTCACACATGTTTTGTTTACTCTGTAATCCTAATTACCGAAGGCGGTAAGTGGTTTAGGTGTTGTGAGAAATTTAAGCTGTCTTACCAGTTACCCCTTCAATTCTTCTATTACTACCTCCATTTACCTTGTTTTATTGATGAAGACTACTTCCAGTTTTTGGATTGGGCTTGTAGGATGTGAGTTAGACTAATATTGGTTGTTTATCATGTCATTTTTAAAACTAATAGCAAGTTCTGTTTCCTTCAGGATTAGGTTATTTGATGTGACACCATTGATCTTGAATTTCACTGGGATACTTATTTCAAATTCAGTTTCTGATTAATTTAATATAAATTTTCAACCAATAAATCTTTCTTTCTAGTCAATTTTGATTATTACTTCAACTAGCACTTAATGTATTTTGAATTTTCATGAAACATGAATTTTCCAACTCAAAGCACTACCCTTTTTATACACTATATATTGCTTTTTTTACATCAAAATTGAGCTTACACAGTATCAAATTGATATAGGACAATCTTATTGAAGTCAAAATTTTGATGATTTGTCAACCATGAAATGTGCTTAGTCAAGTACATGGTTAGGAGCCCTTTTGGCTAGTATAGGTATGCATATATGCTTAATCTGCGAAAAGGTCTATGCACTTGGCTCGTGAAGATGTTTATAGACTAGATTAATGATAGTTGGCCTGTAGGTTGATTGTCTACATTGTTTTATGTGGGAGGAGGCTAAATCCTGCTGATGAAAGAAATCAAACAATTCCCAGTCTTAATAAATGAAATGAGTGGACTGGATTGAATCCCAGTAAATAGATCTAATACAATAGGTAAGAATGACAACACCATGGTCTAGTGCGAGAATTAAAAAATTGTTGTGTTGCTGGTGATTTTGTGGTTATTTGGAGGTAAGATGAATATTGAAGAACATGTGTTGCTGAGATCAGAGATCTTTATGATTGTGTACTTTGGCTACCTATTGGACTGGGTTATTATTTACTCTCAATAAAATTGTGGTTTATGGGCCCCATTTCTGGTGGTTAAAGAGGCTCTTTTAGGCTACTTGCTTAGCATACTACGAGGAGCAGGTTTTTCGGATGGATTGCATGAAGAATTCTAGGGGTTTTCTAATAAAGGAAAGAGAGGTTAACTTTTGAACTGAGCATCTATGGCTTGGCTAGATTTTGTAGCTAATTGTTTTTCATGTTATCACCTGGGATGAGTCTCCCTCCAATTTGCTTCCCTTGTCACTCTACGTCTACGTAATGTCATGTAAATCACAGCAGCTTTTCTGAGTTGTGAGTCATCCATCACATATGGAATTTGGTTATGCAGGGGGATGTTCTTTGTGTTATCCATGAAAATTGATTACAGACTGCGAAACATTTATCTTTAGACGTATGTATAGCAAAAAAGTTCTCTGCTCTGCCAAAGTTTATGTGAATTATTTAATGACAATGCCTTTCCGCTAAAGGATTAAGACAGAAGTCTTTTTATGGTTTCAAATTATATTTGAGGTAAAATGGGGCTCCTTCAATCTTTTATCTGAAAAGGGAAACGGGTTTTAGGCTTTGGTTTAGTTTTCTTAGTATTTTTAACAGTGGGCTTCCACTGTCCTGAAGGCCCCTCTGCAATTTACCATATCCCTGATATGCAAAAAGGATTGTACTATTACTGCTATGTAATTAAGTCCAGAACTAAGAATAACTGTTTGAGGTAGCTACAAAGGCCCCCAATTCTGTGCACTGAGGTAAATTGATGTAATAACAACTAGGATATGTCTCATCATTCATGAATTCTGGTGACTACTAACTAGCTAAATTTCTGCAACCTTATGTCTTTTTCAACCATAAACCTCTTGCAAAACCATTCCTGCCATAAATTTCCTGTTGGCTTTTTTGTCACTTAGATGTCATTTCTTAATGATCAACCACTAGCCTTCCTTTCCCTGCCTCGCTTAGGTTTGATTCTTTGTAAAAAAGCTTTTACCATTCATGTCAGAAGATGATGAAAACTGTGAAGTCCAAAGTTGAAATCCAGTGCTTGTTATCAGATCCCAGCTACTAAACCCTGGATGACTATTATTACTCTTTATCAAAGTTGAAAATGACATGTTAGTTCATGGAGTATAGAGCTAGGATTCTACATATAAGCCTAATTATCTAGTTCTTAGTATGACATTATTTTTTACAAGGTAAGATGAAGGGCCCTACCGGGCCTGAACCCCTCTCGGGTTAACAGCCAGTAATGGCTGTGGAATGAAAATACGCTTCTATGTAGCTTTACTTAAAAGATGTTGGTGTATACTTATGATTAATATATGAATAGGGTAATCAAGGAAGAGAAATATGCTGCTCGCAGAGCTATACTGCCTTTGCTGCAAGCTGAAGAGGATGAAAGGTAATTAAACTTTCATTCTGATGCTTAGGATGTATTACTTCCTCTTGTTTTTAATTTTTTTTTTGCAGTAGGTATTATACATTGTTGTAAATTATTTTTTTACCCACCATGATTCACAGATTTGTCAAAGAATGGAAAAAGTACCTAGAAGACGAGGCCAGAATTATGAAGAACGTACCAGGCTGGAAAGTAGGCGAGAATGTTTACAACTCTGGGAGATGGATGCCTCCTGCAACTGGTGAGCTTCGTCCTGAAGTTTGGTGA

mRNA sequence

ATGACGGAGGCAGTAATCAGGAACAAGCCAGGAATGGCTAGCGTGAAGGACATGCCTCTCCTTCAAGACGGTCCTCCACCTGGTGGTTTCGCTCCCGTCCGTTACGCCCGTCGTATCCCCACCAAGGGTCCCAGCGCTATTGCCATCTTCTTAACCACTTTCGGCGCTTTCGCTTGGGGTATGTACCAGGTTGGCGAGGGCAACAAGAAGCGCCGGGTAATCAAGGAAGAGAAATATGCTGCTCGCAGAGCTATACTGCCTTTGCTGCAAGCTGAAGAGGATGAAAGATTTGTCAAAGAATGGAAAAAGTACCTAGAAGACGAGGCCAGAATTATGAAGAACGTACCAGGCTGGAAAGTAGGCGAGAATGTTTACAACTCTGGGAGATGGATGCCTCCTGCAACTGGTGAGCTTCGTCCTGAAGTTTGGTGA

Coding sequence (CDS)

ATGACGGAGGCAGTAATCAGGAACAAGCCAGGAATGGCTAGCGTGAAGGACATGCCTCTCCTTCAAGACGGTCCTCCACCTGGTGGTTTCGCTCCCGTCCGTTACGCCCGTCGTATCCCCACCAAGGGTCCCAGCGCTATTGCCATCTTCTTAACCACTTTCGGCGCTTTCGCTTGGGGTATGTACCAGGTTGGCGAGGGCAACAAGAAGCGCCGGGTAATCAAGGAAGAGAAATATGCTGCTCGCAGAGCTATACTGCCTTTGCTGCAAGCTGAAGAGGATGAAAGATTTGTCAAAGAATGGAAAAAGTACCTAGAAGACGAGGCCAGAATTATGAAGAACGTACCAGGCTGGAAAGTAGGCGAGAATGTTTACAACTCTGGGAGATGGATGCCTCCTGCAACTGGTGAGCTTCGTCCTGAAGTTTGGTGA

Protein sequence

MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWGMYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKVGENVYNSGRWMPPATGELRPEVW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01398.1Spo01398.1mRNA


Homology
[Close]
BLAST of Spo01398.1 vs. NCBI nr
Match: gi|902035027|gb|KNA02613.1| (hypothetical protein SOVF_216900 [Spinacia oleracea])

HSP 1 Score: 299.3 bits (765), Expect = 3.600e-78
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG
Sbjct: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV
Sbjct: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRPEVW
Sbjct: 121 GENVYNSGRWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. NCBI nr
Match: gi|731376385|ref|XP_010667549.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 293.1 bits (749), Expect = 2.600e-76
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSA+AIFLTTFGAFAWG
Sbjct: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTTFGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFV EWKKYLEDEARIMKNVPGWKV
Sbjct: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVIEWKKYLEDEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVY+SGRWMPPATGELRPEVW
Sbjct: 121 GENVYHSGRWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. NCBI nr
Match: gi|357113641|ref|XP_003558610.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 276.2 bits (705), Expect = 3.300e-71
Identity = 127/143 (88.81%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTE+++RNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIP+KGPSAIA+FLTTFGAF+WG
Sbjct: 1   MTESLVRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEK AAR AILP+LQAEEDERFVKEWKKYLE+EARIMKNVPGWKV
Sbjct: 61  MYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. NCBI nr
Match: gi|1021027428|gb|KZM85215.1| (hypothetical protein DCAR_027363 [Daucus carota subsp. sativus])

HSP 1 Score: 275.8 bits (704), Expect = 4.300e-71
Identity = 128/143 (89.51%), Postives = 138/143 (96.50%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIP KGPSA+AIFLTTFG F+WG
Sbjct: 1   MTEATIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPNKGPSAVAIFLTTFGVFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MY+VG+GNK RR IKEEKYAARRAILP+LQAEEDERFVKEWKKYLE+EARIMK+VPGWKV
Sbjct: 61  MYEVGKGNKIRRAIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VY+SGRWMPPA+GELRPEVW
Sbjct: 121 GESVYHSGRWMPPASGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. NCBI nr
Match: gi|976903131|gb|KVH91054.1| (GRIM-19-like protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 272.3 bits (695), Expect = 4.700e-70
Identity = 126/143 (88.11%), Postives = 137/143 (95.80%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIP+KGPSA+AIFL  FG F+WG
Sbjct: 1   MTEAFIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAVAIFLAAFGTFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MY+VG+GNK RR IKEEKYAARRAILP+LQAEEDERFVKEWKKYLE+EARIMK+VPGWKV
Sbjct: 61  MYEVGKGNKIRRAIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VY+SG+WMPPATGELRPEVW
Sbjct: 121 GESVYHSGKWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7H2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_216900 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.500e-78
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG
Sbjct: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV
Sbjct: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRPEVW
Sbjct: 121 GENVYNSGRWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B2F7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_009540 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.800e-76
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSA+AIFLTTFGAFAWG
Sbjct: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAMAIFLTTFGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFV EWKKYLEDEARIMKNVPGWKV
Sbjct: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVIEWKKYLEDEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVY+SGRWMPPATGELRPEVW
Sbjct: 121 GENVYHSGRWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Match: I1H8P9_BRADI (Uncharacterized protein OS=Brachypodium distachyon GN=BRADI_1g71700 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.300e-71
Identity = 127/143 (88.81%), Postives = 139/143 (97.20%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTE+++RNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIP+KGPSAIA+FLTTFGAF+WG
Sbjct: 1   MTESLVRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAIALFLTTFGAFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEK AAR AILP+LQAEEDERFVKEWKKYLE+EARIMKNVPGWKV
Sbjct: 61  MYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Match: W5EHI0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 6.700e-71
Identity = 126/143 (88.11%), Postives = 138/143 (96.50%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTE+++RNKPGMASVKDMP+LQDGPPPGGFAPVRYARRIP KGPSAIA+FLTTFGAF+WG
Sbjct: 1   MTESMVRNKPGMASVKDMPVLQDGPPPGGFAPVRYARRIPNKGPSAIALFLTTFGAFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEK AAR AILP+LQAEEDERFVKEWKKYLE+EARIMKNVPGWKV
Sbjct: 61  MYQVGQGNKVRRALKEEKIAARSAILPMLQAEEDERFVKEWKKYLEEEARIMKNVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VYNSG+WMPPATGELRPEVW
Sbjct: 121 GESVYNSGKWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Match: A0A103XHY2_CYNCS (GRIM-19-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_006935 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.300e-70
Identity = 126/143 (88.11%), Postives = 137/143 (95.80%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIP+KGPSA+AIFL  FG F+WG
Sbjct: 1   MTEAFIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPSKGPSAVAIFLAAFGTFSWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MY+VG+GNK RR IKEEKYAARRAILP+LQAEEDERFVKEWKKYLE+EARIMK+VPGWKV
Sbjct: 61  MYEVGKGNKIRRAIKEEKYAARRAILPMLQAEEDERFVKEWKKYLEEEARIMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GE+VY+SG+WMPPATGELRPEVW
Sbjct: 121 GESVYHSGKWMPPATGELRPEVW 143
[Close]
BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Match: NDADB_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.400e-69
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA+IR KPGMASVKDMPLLQDGPPPGGFAPVRYARRI   GPSA+AIFLT  GAFAWG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEKYAARRAILP+LQAEEDERFV EWKKYLE EA +MK+VPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
[Close]
BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Match: NDADA_ARATH (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A OS=Arabidopsis thaliana GN=MEE4 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 6.900e-69
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA+IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRI   GPSA+A+FL   GAFAWG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEKYAARR ILP+LQAEEDERFV EWKKYLE EA +MK+VPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
[Close]
BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 7.900e-25
Identity = 52/117 (44.44%), Postives = 82/117 (70.09%), Query Frame = 1 

		  

Query: 22  QDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWGMYQVGEGNKKRRVIKEEKYAA 81
           QD PP GG+ P+ Y R +P +G S  ++F    GA  +G + + + N++RR ++ E + A
Sbjct: 8   QDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDFEA 67

Query: 82  RRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKVGENVYNSGRWMPPATGEL 139
           R A++PLLQAE+D R ++  ++ LE+EA +MK+VPGWKVGE+V+++ RW+ P  GEL
Sbjct: 68  RIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKVGESVFHTTRWVTPMMGEL 124
[Close]
BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 1.000e-24
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 1 

		  

Query: 22  QDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWGMYQVGEGNKKRRVIKEEKYAA 81
           QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + + N++RR ++ E + A
Sbjct: 8   QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEA 67

Query: 82  RRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKVGENVYNSGRWMPPATGEL 139
           R A+LPLLQAE D R ++  ++ LE+EA IMK+VP WKVGE+V+++ RW+PP  GEL
Sbjct: 68  RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
[Close]
BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 1.000e-24
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 1 

		  

Query: 22  QDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWGMYQVGEGNKKRRVIKEEKYAA 81
           QD PPPGG+ P+ Y R +P +G S  ++     G   +G + + + N++RR ++ E + A
Sbjct: 8   QDMPPPGGYGPIDYKRNLPRRGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEA 67

Query: 82  RRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKVGENVYNSGRWMPPATGEL 139
           R A+LPLLQAE D R ++  ++ LE+EA IMK+VP WKVGE+V+++ RW+PP  GEL
Sbjct: 68  RIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKVGESVFHTTRWVPPLIGEL 124
[Close]
BLAST of Spo01398.1 vs. TAIR (Arabidopsis)
Match: AT2G33220.1 (GRIM-19 protein)

HSP 1 Score: 263.5 bits (672), Expect = 7.800e-71
Identity = 124/143 (86.71%), Postives = 132/143 (92.31%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA+IR KPGMASVKDMPLLQDGPPPGGFAPVRYARRI   GPSA+AIFLT  GAFAWG
Sbjct: 1   MTEAMIRKKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEKYAARRAILP+LQAEEDERFV EWKKYLE EA +MK+VPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
[Close]
BLAST of Spo01398.1 vs. TAIR (Arabidopsis)
Match: AT1G04630.1 (GRIM-19 protein)

HSP 1 Score: 261.2 bits (666), Expect = 3.900e-70
Identity = 122/143 (85.31%), Postives = 131/143 (91.61%), Query Frame = 1 

		  

Query: 1   MTEAVIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRIPTKGPSAIAIFLTTFGAFAWG 60
           MTEA+IRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRI   GPSA+A+FL   GAFAWG
Sbjct: 1   MTEAMIRNKPGMASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWG 60

Query: 61  MYQVGEGNKKRRVIKEEKYAARRAILPLLQAEEDERFVKEWKKYLEDEARIMKNVPGWKV 120
           MYQVG+GNK RR +KEEKYAARR ILP+LQAEEDERFV EWKKYLE EA +MK+VPGWKV
Sbjct: 61  MYQVGQGNKIRRALKEEKYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKV 120

Query: 121 GENVYNSGRWMPPATGELRPEVW 144
           GENVYNSGRWMPPATGELRP+VW
Sbjct: 121 GENVYNSGRWMPPATGELRPDVW 143
The following BLAST results are available for this feature:
BLAST of Spo01398.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902035027|gb|KNA02613.1|3.6e-78100.hypothetical protein SOVF_2169... [more]
gi|731376385|ref|XP_010667549.1|2.6e-7697.9PREDICTED: NADH dehydrogenase ... [more]
gi|357113641|ref|XP_003558610.1|3.3e-7188.8PREDICTED: NADH dehydrogenase ... [more]
gi|1021027428|gb|KZM85215.1|4.3e-7189.5hypothetical protein DCAR_0273... [more]
gi|976903131|gb|KVH91054.1|4.7e-7088.1GRIM-19-like protein [Cynara c... [more]
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BLAST of Spo01398.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q7H2_SPIOL2.5e-78100.Uncharacterized protein OS=Spi... [more]
A0A0J8B2F7_BETVU1.8e-7697.9Uncharacterized protein OS=Bet... [more]
I1H8P9_BRADI2.3e-7188.8Uncharacterized protein OS=Bra... [more]
W5EHI0_WHEAT6.7e-7188.1Uncharacterized protein OS=Tri... [more]
A0A103XHY2_CYNCS3.3e-7088.1GRIM-19-like protein OS=Cynara... [more]
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BLAST of Spo01398.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NDADB_ARATH1.4e-6986.7NADH dehydrogenase [ubiquinone... [more]
NDADA_ARATH6.9e-6985.3NADH dehydrogenase [ubiquinone... [more]
NDUAD_BOVIN7.9e-2544.4NADH dehydrogenase [ubiquinone... [more]
NDUAD_GORGO1.0e-2445.3NADH dehydrogenase [ubiquinone... [more]
NDUAD_HUMAN1.0e-2445.3NADH dehydrogenase [ubiquinone... [more]
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BLAST of Spo01398.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G33220.17.8e-7186.7GRIM-19 protein[more]
AT1G04630.13.9e-7085.3GRIM-19 protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 14..140
score: 3.2
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 20..138
score: 8.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009853 photorespiration
biological_process GO:0006012 galactose metabolic process
biological_process GO:0009225 nucleotide-sugar metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006414 translational elongation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005840 ribosome
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0003978 UDP-glucose 4-epimerase activity
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo188741.00Barchart | Table
Spo144040.85Barchart | Table
Spo252060.82Barchart | Table
Spo116790.82Barchart | Table
Spo023890.81Barchart | Table
Spo070170.81Barchart | Table
Spo202840.79Barchart | Table
Spo236220.79Barchart | Table
Spo229390.79Barchart | Table
Spo070160.79Barchart | Table
Spo029280.78Barchart | Table
Spo225050.78Barchart | Table
Spo176620.78Barchart | Table
Spo059490.78Barchart | Table
Spo248740.77Barchart | Table
Spo159940.76Barchart | Table
Spo050640.76Barchart | Table
Spo269940.76Barchart | Table
Spo082580.76Barchart | Table
Spo014030.75Barchart | Table
Spo166940.74Barchart | Table
Spo014910.74Barchart | Table
Spo059090.74Barchart | Table
Spo054150.73Barchart | Table
Spo251320.73Barchart | Table
Spo078210.73Barchart | Table
Spo015350.73Barchart | Table
Spo051140.73Barchart | Table
Spo015460.73Barchart | Table
Spo036260.73Barchart | Table
Spo065710.73Barchart | Table
Spo023970.72Barchart | Table
Spo045270.72Barchart | Table
Spo005800.71Barchart | Table
Spo063180.71Barchart | Table
Spo081800.71Barchart | Table
Spo101470.71Barchart | Table
Spo105650.71Barchart | Table
Spo211860.71Barchart | Table
Spo212030.71Barchart | Table
Spo229360.71Barchart | Table
Spo242130.71Barchart | Table
Spo240010.70Barchart | Table
Spo159020.70Barchart | Table
Spo059350.70Barchart | Table
Spo230380.70Barchart | Table
Spo168940.70Barchart | Table
Spo050900.70Barchart | Table
Spo009680.70Barchart | Table
Spo185740.70Barchart | Table
Spo127590.70Barchart | Table
Spo069040.70Barchart | Table
Spo145130.70Barchart | Table
Spo214060.69Barchart | Table
Spo263750.69Barchart | Table
Spo253060.69Barchart | Table
Spo135610.69Barchart | Table
Spo111640.69Barchart | Table
Spo022870.69Barchart | Table
Spo242030.69Barchart | Table
Spo035730.69Barchart | Table
Spo178980.69Barchart | Table
Spo214140.69Barchart | Table
Spo124380.69Barchart | Table
Spo192360.68Barchart | Table
Spo116430.68Barchart | Table
Spo143800.68Barchart | Table
Spo170680.68Barchart | Table
Spo174950.68Barchart | Table
Spo181440.68Barchart | Table
Spo182120.68Barchart | Table
Spo194410.68Barchart | Table
Spo266390.68Barchart | Table
Spo081720.68Barchart | Table
Spo052440.67Barchart | Table
Spo232360.67Barchart | Table
Spo216240.67Barchart | Table
Spo222150.67Barchart | Table
Spo094950.67Barchart | Table
Spo206470.67Barchart | Table
Spo038020.67Barchart | Table
Spo029420.67Barchart | Table
Spo052320.67Barchart | Table
Spo155870.66Barchart | Table
Spo179500.66Barchart | Table
Spo037170.66Barchart | Table
Spo105970.66Barchart | Table
Spo033150.66Barchart | Table
Spo188490.66Barchart | Table
Spo007180.66Barchart | Table
Spo248700.66Barchart | Table
Spo091390.66Barchart | Table
Spo249020.65Barchart | Table
Spo079160.65Barchart | Table
Spo183700.65Barchart | Table
Spo069440.65Barchart | Table
Spo179030.65Barchart | Table
Spo104010.65Barchart | Table