Spo01336 (gene) | SpinachBase

Overview


Name	Spo01336
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 15506301 .. 15508427 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAATAGTACTTCTAAGTTCTAACACAGCTTTGATTAAAATGCGGGACTTGGGCACATTAGAGGAGCAAGTAAAGTTTGTACTTGAAGAACATCCACAGTTTTGGCTTACAAGAGGTATAAAGGTACAGTAGGGACATTACAACTCCTTATGTTGGCCAAGAGGAGAGAAATTATCACTTGACTTTAATGTTATAAAGCTATCTCTTTTTAAATCAGGTCTTGGATTTTATGCAGATTTTGTTTAAAGGCTATGTCTTTAATTTGTGATGAGAGACAACCGCAAAAACAAGTTTGATTAAGGTTTTATAATTTGCAAAACAAACAAACAAAAAGATAAAAATGAGGAATTTATAATTTTCGGTCAACCTTCAGTTTCAAGCCTGAAATTTATTAACTTATTTCTAAAAGAGAAATATAATAGAATTCTGTCAGAAATTTCAAATTTGATAAACAAATTTTGATTCATTGTCAAATTCTTACCTTTTTATAATTTTTTTGTGCTTTATTTTGTCTTTGAATTTTCCGATCTGCAGGAGCAAGAGCTTTTACAGTGGGAGAGACATTTCAACACGAGGTTGAAGACTCAACCCCCCCCCCCTCCCCCCCCACAGATTTTCCCCTTCCCTTTCAAGGTCCACGGTTGATGCTTAGAGTTGAAATGAAGAATGCATAGGTCTGCAGTTTCTTTTTCTAGTTCAGTACTTTCTTCTATATTGTTTTAGTTATGCTTGTTTTCTTTCCTCTTTCTTCACGTGTCACCTTGTGTTATCCCGTGCTTCATTTCTTTTCTGTTCTGATTATTTACTTTAATAAGGATTTGGTCACTGTAGGAACTCATTACAAATGGAAAGTGGTGTCAGCAGTGGAGGTGGACTGAGTTCCTTGGGCTATCGGTTTGGAAGCGGAGAGGCTCCTAAGCCTGCTTCCACTAAAGCTCCAGCAAACGTCTGCGTTGAACCGGTTATGAAAGAAGCAACAAGGCCTGGTGCTGCAGCTGATAATCCCCAGCATAGTTATCTCAAGAAGGTTCCTGCTGGAGTTAATAGTAATATAAACAACTACTATCATGCTGACGGTCAGAACACTGGAAATTTCATCACGGTATGACTGCAACAACATCCACTTTTTCTTTTCCCCTTCTAAAAATTTATGCACATAATTATAACCAAATTCCCTTGGAACATACTATTAGTTTTAAATATTTGATTTTATAAGATTCTAAACAGAGGGGGAATTTTTATTTACGTAAGCATTACAGTGTNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGACGATTGGAAATGCGTGTCATAAAAGCATTGAACAATATGGAAAATTGAATATCCTAGAGCTTCGTTATTGTTGAAAATTATTTTATGACTTTGAATGTTGAAGATAGCAGGAAAAGACCAGGGAAAAAAATTTTATGTCCCTGTGAGCCTTGTGTTTTTGACATTTTAGATTAGCTAGTTTGGAAATGAACTGAGTGGATCAATTTGTTTAAGATGTTGCTACAAAATTGTTATGAAAATGCATGTTTTTAATTGGGAAGCGGACTGCAAACTACAGAAAATGTCATATTTGTCTTATCTTGGTGCCTAGCAACCATAGAAGAGGGGATCCTCTAGTTAAATTAGGAATTCCTTGTAATGCACAGTAGTTCAATTTTGAGTTTCATTATTTCTTTCTTTCTTTACATTGCACTTTTCTTAATTTGCCTTACTTATGGAAGAAGCTATTATTACTTACGGTTATATTTTTTTCTTAAAGTCCATGATGCATTTGAAGATTATGGTGATGGAAGAAAGGAGTCAAGCTAGAGATGATGCATATGTATATATAGCTTCTTAACTATGAAGGCAATGAAGCCCAGATTATGAAACTAGCCTTTTGAATGACCTTTGTTTTGTAGATTACATTTTAGAATAATAGGTTGGAACTATAAGTAGAGGTGATGGATGTTTTGGTCTTAAGCTTGTGTTTAGGAGACGACACTATCTAAATAGTTTGGAAAATGTGTAATCTTTGATGTATGTTTTGGACGTATTATTATGCAAATTAATAATAGTATTCAAG

mRNA sequence

ATGACAATAGTACTTCTAAGTTCTAACACAGCTTTGATTAAAATGCGGGACTTGGGCACATTAGAGGAGCAAGTAAAGTTTGTACTTGAAGAACATCCACAGTTTTGGCTTACAAGAGGAGCAAGAGCTTTTACAGTGGGAGAGACATTTCAACACGAGGTTGAAGACTCAACCCCCCCCCCCTCCCCCCCCACAGATTTTCCCCTTCCCTTTCAAGGTCCACGGTTGATGCTTAGAGTTGAAATGAAGAATGCATAGGAACTCATTACAAATGGAAAGTGGTGTCAGCAGTGGAGGTGGACTGAGTTCCTTGGGCTATCGGTTTGGAAGCGGAGAGGCTCCTAAGCCTGCTTCCACTAAAGCTCCAGCAAACGTCTGCGTTGAACCGGTTATGAAAGAAGCAACAAGGCCTGGTGCTGCAGCTGATAATCCCCAGCATAGTTATCTCAAGAAGGTTCCTGCTGGAGTTAATAGTAATATAAACAACTACTATCATGCTGACGGTCAGAACACTGGAAATTTCATCACGTCCATGATGCATTTGAAGATTATGGTGATGGAAGAAAGGAGTCAAGCTAGAGATGATGCATATGTATATATAGCTTCTTAACTATGAAGGCAATGAAGCCCAGATTATGAAACTAGCCTTTTGAATGACCTTTGTTTTGTAGATTACATTTTAGAATAATAGGTTGGAACTATAAGTAGAGGTGATGGATGTTTTGGTCTTAAGCTTGTGTTTAGGAGACGACACTATCTAAATAGTTTGGAAAATGTGTAATCTTTGATGTATGTTTTGGACGTATTATTATGCAAATTAATAATAGTATTCAAG

Coding sequence (CDS)

ATGACAATAGTACTTCTAAGTTCTAACACAGCTTTGATTAAAATGCGGGACTTGGGCACATTAGAGGAGCAAGTAAAGTTTGTACTTGAAGAACATCCACAGTTTTGGCTTACAAGAGGAGCAAGAGCTTTTACAGTGGGAGAGACATTTCAACACGAGGTTGAAGACTCAACCCCCCCCCCCTCCCCCCCCACAGATTTTCCCCTTCCCTTTCAAGGTCCACGGTTGATGCTTAGAGTTGAAATGAAGAATGCATAG

Protein sequence

MTIVLLSSNTALIKMRDLGTLEEQVKFVLEEHPQFWLTRGARAFTVGETFQHEVEDSTPPPSPPTDFPLPFQGPRLMLRVEMKNA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo01336.1	Spo01336.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo01336.1 vs. NCBI nr
BLAST of Spo01336.1 vs. UniProtKB/TrEMBL
BLAST of Spo01336.1 vs. ExPASy Swiss-Prot
BLAST of Spo01336.1 vs. TAIR (Arabidopsis)

BLAST of Spo01336.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo01336.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo01336.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo01336.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21977	0.75	Barchart \| Table
Spo19657	0.74	Barchart \| Table
Spo13647	0.71	Barchart \| Table
Spo15256	0.70	Barchart \| Table
Spo28001	0.69	Barchart \| Table
Spo05898	0.69	Barchart \| Table
Spo18348	0.69	Barchart \| Table
Spo13030	0.68	Barchart \| Table
Spo04015	0.68	Barchart \| Table
Spo18636	0.68	Barchart \| Table
Spo26439	0.67	Barchart \| Table
Spo21148	0.67	Barchart \| Table
Spo15648	0.66	Barchart \| Table
Spo03639	0.66	Barchart \| Table
Spo01788	0.66	Barchart \| Table
Spo14963	0.65	Barchart \| Table