Spo01279 (gene)

Overview
NameSpo01279
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRING/U-box superfamily protein, putative
Locationchr3 : 72729584 .. 72730696 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGTAACGGTGGTGGCGTAGCTACTGCTGTTACTTCTCGGAGACTGACATCCCACCACTCAACCCTTCGCGACACCTTCATTGCGGCGGATCTGTCTGATGCAATCCACCGTGAATTCAGCAATAATTCCATCTTAGTAAATAACAGCAGTAGCCCAAGAAGGGTATCAAACGTCACGCTGGGTGCTGTACTCAACAGCGACAGGAAATCGCCCCCACCGGCTAACGTAGTTGTCCGAACCCTCCTTGAGGTTATCCGCAACGACGAGACCCTTACCCCTGCAACTACTGGAGGAGGCTCCCCTCACAGCAAGAAGACTTGGAAATCTTTTAAAGAACGCCTTAAACTCAGGAGGCATCACCATTTAAGTCAGAATCAGAATCAGAATCCAAATTCCCACCGTTGGACGTCCTCTTTGCCAGTCCCGCAATCAGACGTGATACCCAACTCGAGATCATTATCGATAGCAGAAATGATGGCAAATAGGAACTCCCTTAGGAGCACTTCACTCAGGAGAGTTGATCCAGTTCCAGCTGATGACCTGACCTTGAGGGAACAGACTGATAGTGGTGGGTCTCCTAGGAGTGGCAGTAGCTTCAGGCTGTCTGCAGCTTTGGCTGCTGAGAGGGAGCAAACTCGTAGATGGTTATCAAGGGAGCTTGATGAGGGTAACAGAAGTAGGAATGAGAATGAGGAAAATGAAGGGTCTCCTCATGGAAATTTAGATGAGGATGATGATGAGGAGGATGGAGAAGGGATTCCTAATATAGGGCCTCCTGCAAATCAGCCAATGAGAATGTCGTTGATGGATTTGTTAGAGGAGACGGATCGACAGGCTGGTATAAGTGGACCTACATACAGGTTGGATGACGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAGGAAGAGGTAGAGGTGGAAGAGGAGGTAGAGGAGCTTGGGAAAGGAGAGTTTTCTTGTTGTGTGTGTATGGTGAGGCATAAAGGTGCAGCATTCATTCCTTGTGGCCATACGTTTTGCAGGTTATGTTCCAGGGAGCTCTTTGTTCAGAGAGGAAACTGCCCACTTTGCAATAATTTCATCTTGGAGATTTTGGATATCTTCTAA

mRNA sequence

ATGGACAGTAACGGTGGTGGCGTAGCTACTGCTGTTACTTCTCGGAGACTGACATCCCACCACTCAACCCTTCGCGACACCTTCATTGCGGCGGATCTGTCTGATGCAATCCACCGTGAATTCAGCAATAATTCCATCTTAGTAAATAACAGCAGTAGCCCAAGAAGGGTATCAAACGTCACGCTGGGTGCTGTACTCAACAGCGACAGGAAATCGCCCCCACCGGCTAACGTAGTTGTCCGAACCCTCCTTGAGGTTATCCGCAACGACGAGACCCTTACCCCTGCAACTACTGGAGGAGGCTCCCCTCACAGCAAGAAGACTTGGAAATCTTTTAAAGAACGCCTTAAACTCAGGAGGCATCACCATTTAAGTCAGAATCAGAATCAGAATCCAAATTCCCACCGTTGGACGTCCTCTTTGCCAGTCCCGCAATCAGACGTGATACCCAACTCGAGATCATTATCGATAGCAGAAATGATGGCAAATAGGAACTCCCTTAGGAGCACTTCACTCAGGAGAGTTGATCCAGTTCCAGCTGATGACCTGACCTTGAGGGAACAGACTGATAGTGGTGGGTCTCCTAGGAGTGGCAGTAGCTTCAGGCTGTCTGCAGCTTTGGCTGCTGAGAGGGAGCAAACTCGTAGATGGTTATCAAGGGAGCTTGATGAGGGTAACAGAAGTAGGAATGAGAATGAGGAAAATGAAGGGTCTCCTCATGGAAATTTAGATGAGGATGATGATGAGGAGGATGGAGAAGGGATTCCTAATATAGGGCCTCCTGCAAATCAGCCAATGAGAATGTCGTTGATGGATTTGTTAGAGGAGACGGATCGACAGGCTGGTATAAGTGGACCTACATACAGGTTGGATGACGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAGGAAGAGGTAGAGGTGGAAGAGGAGGTAGAGGAGCTTGGGAAAGGAGAGTTTTCTTGTTGTGTGTGTATGGTGAGGCATAAAGGTGCAGCATTCATTCCTTGTGGCCATACGTTTTGCAGGTTATGTTCCAGGGAGCTCTTTGTTCAGAGAGGAAACTGCCCACTTTGCAATAATTTCATCTTGGAGATTTTGGATATCTTCTAA

Coding sequence (CDS)

ATGGACAGTAACGGTGGTGGCGTAGCTACTGCTGTTACTTCTCGGAGACTGACATCCCACCACTCAACCCTTCGCGACACCTTCATTGCGGCGGATCTGTCTGATGCAATCCACCGTGAATTCAGCAATAATTCCATCTTAGTAAATAACAGCAGTAGCCCAAGAAGGGTATCAAACGTCACGCTGGGTGCTGTACTCAACAGCGACAGGAAATCGCCCCCACCGGCTAACGTAGTTGTCCGAACCCTCCTTGAGGTTATCCGCAACGACGAGACCCTTACCCCTGCAACTACTGGAGGAGGCTCCCCTCACAGCAAGAAGACTTGGAAATCTTTTAAAGAACGCCTTAAACTCAGGAGGCATCACCATTTAAGTCAGAATCAGAATCAGAATCCAAATTCCCACCGTTGGACGTCCTCTTTGCCAGTCCCGCAATCAGACGTGATACCCAACTCGAGATCATTATCGATAGCAGAAATGATGGCAAATAGGAACTCCCTTAGGAGCACTTCACTCAGGAGAGTTGATCCAGTTCCAGCTGATGACCTGACCTTGAGGGAACAGACTGATAGTGGTGGGTCTCCTAGGAGTGGCAGTAGCTTCAGGCTGTCTGCAGCTTTGGCTGCTGAGAGGGAGCAAACTCGTAGATGGTTATCAAGGGAGCTTGATGAGGGTAACAGAAGTAGGAATGAGAATGAGGAAAATGAAGGGTCTCCTCATGGAAATTTAGATGAGGATGATGATGAGGAGGATGGAGAAGGGATTCCTAATATAGGGCCTCCTGCAAATCAGCCAATGAGAATGTCGTTGATGGATTTGTTAGAGGAGACGGATCGACAGGCTGGTATAAGTGGACCTACATACAGGTTGGATGACGAAGAAGAAGAAGAAGAAGAGGAGGAAGAAGAGGAAGAGGTAGAGGTGGAAGAGGAGGTAGAGGAGCTTGGGAAAGGAGAGTTTTCTTGTTGTGTGTGTATGGTGAGGCATAAAGGTGCAGCATTCATTCCTTGTGGCCATACGTTTTGCAGGTTATGTTCCAGGGAGCTCTTTGTTCAGAGAGGAAACTGCCCACTTTGCAATAATTTCATCTTGGAGATTTTGGATATCTTCTAA

Protein sequence

MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNVTLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRRHHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPADDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01279.1Spo01279.1mRNA


Homology
[Close]
BLAST of Spo01279.1 vs. NCBI nr
Match: gi|902208821|gb|KNA16038.1| (hypothetical protein SOVF_092810 [Spinacia oleracea])

HSP 1 Score: 700.3 bits (1806), Expect = 1.800e-198
Identity = 369/370 (99.73%), Postives = 369/370 (99.73%), Query Frame = 1 

		  

Query: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60
           MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV
Sbjct: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60

Query: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120
           TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR
Sbjct: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120

Query: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180
           HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA
Sbjct: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180

Query: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240
           DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH
Sbjct: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240

Query: 241 GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEE 300
           GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDD EEEEEEE
Sbjct: 241 GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDD-EEEEEEE 300

Query: 301 EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN 360
           EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN
Sbjct: 301 EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN 360

Query: 361 NFILEILDIF 371
           NFILEILDIF
Sbjct: 361 NFILEILDIF 369
[Close]
BLAST of Spo01279.1 vs. NCBI nr
Match: gi|731347513|ref|XP_010685024.1| (PREDICTED: E3 ubiquitin-protein ligase RNF34-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 512.7 bits (1319), Expect = 5.400e-142
Identity = 285/376 (75.80%), Postives = 320/376 (85.11%), Query Frame = 1 

		  

Query: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60
           MDS+GGGVATAVT RRL+S HSTLRDTFIA DL+D ++  F+NN  +VNN+++PR  SN+
Sbjct: 1   MDSDGGGVATAVTPRRLSSQHSTLRDTFIATDLADGLNHAFTNNCAVVNNTTNPR--SNL 60

Query: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120
           TLGAVLN D+K P  ANVV RTLLE+IRNDETL+P +  G +P++KKTWKSFKERLKL+R
Sbjct: 61  TLGAVLNRDKKPPQTANVVARTLLEIIRNDETLSPRSARG-NPNNKKTWKSFKERLKLKR 120

Query: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180
           +   +QNQNQNPNS RW SSLPVPQSDVI NS        MANRNSLRS+SLRRVD VPA
Sbjct: 121 NSIPNQNQNQNPNSQRWASSLPVPQSDVITNS--------MANRNSLRSSSLRRVDTVPA 180

Query: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240
           DDL++RE  DSGGSPRSG SFRLSAALAAEREQTRR LSRELDE N  R+++EE+EGSPH
Sbjct: 181 DDLSMRE-VDSGGSPRSGGSFRLSAALAAEREQTRRRLSRELDEDNLIRDDDEESEGSPH 240

Query: 241 GNLDEDDDEEDGE------GIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEE 300
           GN DED+DE++ E      GIPN+GPPANQPMRMSLMDLLEETDRQAGISGPTYRL+DEE
Sbjct: 241 GNEDEDEDEDEDEDDEEDGGIPNLGPPANQPMRMSLMDLLEETDRQAGISGPTYRLEDEE 300

Query: 301 EEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG 360
           EEEEEE EEEEV     VE+ GKGE+SCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG
Sbjct: 301 EEEEEEVEEEEV-----VEDAGKGEYSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG 359

Query: 361 NCPLCNNFILEILDIF 371
           NCPLCNNFILEILDIF
Sbjct: 361 NCPLCNNFILEILDIF 359
[Close]
BLAST of Spo01279.1 vs. NCBI nr
Match: gi|661892728|emb|CDP03886.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 193.7 bits (491), Expect = 5.600e-46
Identity = 150/321 (46.73%), Postives = 180/321 (56.07%), Query Frame = 1 

		  

Query: 57  VSNVTLGAVLNS-DRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKER 116
           +SN+TL AVL + DR   P      RTL+++IR D        GG S  ++K+W+ F+E+
Sbjct: 1   MSNLTLSAVLKTEDRSGGPMRTPSNRTLMDIIREDPN-----GGGYSKDTRKSWRHFREK 60

Query: 117 LKLRRHHHLSQNQNQNPNSHRWTSSLPVPQSDVI---PNSRSLSIAEMMANRNSLRSTSL 176
           L+LRR    S           WTSS+PVP SDV    P   S S   MM +R    ST L
Sbjct: 61  LRLRRQGSGSS----------WTSSVPVPASDVPIQHPMGGSSSSRRMMMSRRD--STRL 120

Query: 177 RRVDPVPADDLTLREQTD-SGGSPRSGSSF--RLSAALAAEREQTRRWLSRELDEGNRSR 236
                 P  D T +   D S G PRS SS   R  +     R    R +  E+       
Sbjct: 121 N----TPTPDQTSQPDADLSSGVPRSRSSMLQRNESRAIRGRYDNARGIDDEM-----GA 180

Query: 237 NENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYR 296
            E EE EG       E  +EE+G G    G    QP+RMSLM LL ETDRQ G+ G  + 
Sbjct: 181 EEGEETEG-------ETTEEEEGGG-GGTGGGEEQPVRMSLMALLAETDRQMGLDGSGFT 240

Query: 297 LDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSREL 356
           +DD+E+ +EEEEEEEE          G G  +CCVCMVRHKGAAFIPCGHTFCRLCSREL
Sbjct: 241 MDDDEDADEEEEEEEEGGAG------GGGYNNCCVCMVRHKGAAFIPCGHTFCRLCSREL 281

Query: 357 FVQRGNCPLCNNFILEILDIF 371
           +VQRGNCPLCNNFILEILDIF
Sbjct: 301 WVQRGNCPLCNNFILEILDIF 281
[Close]
BLAST of Spo01279.1 vs. NCBI nr
Match: gi|1009149507|ref|XP_015892515.1| (PREDICTED: uncharacterized protein LOC107426760 [Ziziphus jujuba])

HSP 1 Score: 174.1 bits (440), Expect = 4.600e-40
Identity = 148/381 (38.85%), Postives = 199/381 (52.23%), Query Frame = 1 

		  

Query: 51  SSSPRRVSNVTLGAVLNSDRK---SPPPA---NVVVRTLLEVIRNDETLTPATTGGGSPH 110
           ++  R ++ +TL  VL ++++   +PPPA   +   RTLL++IR++E  +  T  G S  
Sbjct: 67  AADSRDLAGLTLDDVLGTEKRPVPAPPPAPPRSQSGRTLLDIIRDEEPKS-GTFKGFSNR 126

Query: 111 SKKTWKSFKERLKLRRH-------------------------HHLSQN------------ 170
            KK WKSFK+RL+L+R                           H S N            
Sbjct: 127 DKKAWKSFKDRLRLKRAGNAWNSSAPIPASDIRILNHRSLLLRHNSVNFHTASLPTVSRH 186

Query: 171 ----QNQNPNSHRWTSSLPVPQSDVIPN------------SRSLSIAEMMANRNSLRSTS 230
                N+NP        +  P ++  P             S   S  +++A +N+ R   
Sbjct: 187 NMAYPNENPVDIPAVGDMMAPPNNGRPQISRRGSTRFGAFSSDNSDDDVLAGQNTTRPQI 246

Query: 231 LRR--VDPVPADDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSR 290
            RR  V    + D  + +QTD    P+   S RLSAALA ER  + R       E   ++
Sbjct: 247 SRRHSVRFALSSDDNVGDQTDP---PQREGSRRLSAALADERSLSAR-------EAVAAQ 306

Query: 291 NENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYR 350
              E    +     +++ ++EDGE  P  G    QP+RMSLMDLLEETDRQ G+ G  Y 
Sbjct: 307 EAAEAEAAAAAAAAEQEAEDEDGESAPE-GGEGGQPVRMSLMDLLEETDRQMGLVGSRYM 366

Query: 351 LDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSREL 371
           + DE++ +EEEEE+EE    +E EE    E +CCVCMVRHKGAAFIPCGHTFCRLCSREL
Sbjct: 367 MGDEDDYDEEEEEDEE----DEEEESNGVEHNCCVCMVRHKGAAFIPCGHTFCRLCSREL 426
[Close]
BLAST of Spo01279.1 vs. NCBI nr
Match: gi|694390217|ref|XP_009370684.1| (PREDICTED: uncharacterized protein LOC103960024 [Pyrus x bretschneideri])

HSP 1 Score: 171.8 bits (434), Expect = 2.300e-39
Identity = 149/360 (41.39%), Postives = 194/360 (53.89%), Query Frame = 1 

		  

Query: 51  SSSPRRVSNVTLGAVLNSDR--KSPP-----PANVVVRTLLEVIRNDETLTPATTGGGSP 110
           SS+ R ++ ++L  +L +    K PP     P  +  RTLL++IR++E  +     G   
Sbjct: 16  SSNGRDLAGLSLDDLLLAPAAAKQPPTPPALPPTISGRTLLDIIRDEEPKSYRALIGKK- 75

Query: 111 HSKKTWKSFKERLKLRRHHHLSQNQNQNPNSHRWTSSLPVPQSDV-IPNSRS-LSIAEMM 170
             KK WKSFK+RL L+R                WTSS+ VP SD+ I N+ +  S     
Sbjct: 76  -DKKAWKSFKDRLLLKR------------AGSAWTSSVRVPTSDIPIRNTANYASNRHQH 135

Query: 171 ANRNSLRSTSLRRVDPVPADDLTLRE--------------------QTDSGGSPRSGSSF 230
              ++ R  S+R V P    D+T +E                    + D+     S  + 
Sbjct: 136 PRSHNSRRGSVRYVTPESNLDMTQQERQIARRGSTRLSTNSSIPFDEVDADNPRASMFTR 195

Query: 231 RLSAALAAEREQT---RRWLSRELDEGNRSRNENE--------ENEGSPHGNLDEDDDEE 290
           R S   AA+   T   RR LS  L+E  RS +  E          E S         +EE
Sbjct: 196 RSSVRFAADEVATDSPRRRLSAALEE-ERSLSAREAMAAEAMAAQEASEAAAAALAAEEE 255

Query: 291 DGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEE 350
            G+ + +      +P+RMSLMDLLEETDRQ G+    Y +D++E+EEE EEEEEE E E 
Sbjct: 256 TGKDVSSGAAGTAEPVRMSLMDLLEETDRQMGVES-RYTMDEDEDEEECEEEEEEEEEEA 315

Query: 351 EVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
             EE G  E++CCVCMVRHKGAAFIPCGHTFCR+CSREL+VQRGNCPLCNNFILEILDIF
Sbjct: 316 AAEE-GNVEYNCCVCMVRHKGAAFIPCGHTFCRMCSRELWVQRGNCPLCNNFILEILDIF 358
[Close]
BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R914_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_092810 PE=4 SV=1)

HSP 1 Score: 700.3 bits (1806), Expect = 1.300e-198
Identity = 369/370 (99.73%), Postives = 369/370 (99.73%), Query Frame = 1 

		  

Query: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60
           MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV
Sbjct: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60

Query: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120
           TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR
Sbjct: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120

Query: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180
           HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA
Sbjct: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180

Query: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240
           DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH
Sbjct: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240

Query: 241 GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEE 300
           GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDD EEEEEEE
Sbjct: 241 GNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDD-EEEEEEE 300

Query: 301 EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN 360
           EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN
Sbjct: 301 EEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCN 360

Query: 361 NFILEILDIF 371
           NFILEILDIF
Sbjct: 361 NFILEILDIF 369
[Close]
BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C006_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g167720 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 3.800e-142
Identity = 285/376 (75.80%), Postives = 320/376 (85.11%), Query Frame = 1 

		  

Query: 1   MDSNGGGVATAVTSRRLTSHHSTLRDTFIAADLSDAIHREFSNNSILVNNSSSPRRVSNV 60
           MDS+GGGVATAVT RRL+S HSTLRDTFIA DL+D ++  F+NN  +VNN+++PR  SN+
Sbjct: 1   MDSDGGGVATAVTPRRLSSQHSTLRDTFIATDLADGLNHAFTNNCAVVNNTTNPR--SNL 60

Query: 61  TLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKERLKLRR 120
           TLGAVLN D+K P  ANVV RTLLE+IRNDETL+P +  G +P++KKTWKSFKERLKL+R
Sbjct: 61  TLGAVLNRDKKPPQTANVVARTLLEIIRNDETLSPRSARG-NPNNKKTWKSFKERLKLKR 120

Query: 121 HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIAEMMANRNSLRSTSLRRVDPVPA 180
           +   +QNQNQNPNS RW SSLPVPQSDVI NS        MANRNSLRS+SLRRVD VPA
Sbjct: 121 NSIPNQNQNQNPNSQRWASSLPVPQSDVITNS--------MANRNSLRSSSLRRVDTVPA 180

Query: 181 DDLTLREQTDSGGSPRSGSSFRLSAALAAEREQTRRWLSRELDEGNRSRNENEENEGSPH 240
           DDL++RE  DSGGSPRSG SFRLSAALAAEREQTRR LSRELDE N  R+++EE+EGSPH
Sbjct: 181 DDLSMRE-VDSGGSPRSGGSFRLSAALAAEREQTRRRLSRELDEDNLIRDDDEESEGSPH 240

Query: 241 GNLDEDDDEEDGE------GIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYRLDDEE 300
           GN DED+DE++ E      GIPN+GPPANQPMRMSLMDLLEETDRQAGISGPTYRL+DEE
Sbjct: 241 GNEDEDEDEDEDEDDEEDGGIPNLGPPANQPMRMSLMDLLEETDRQAGISGPTYRLEDEE 300

Query: 301 EEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG 360
           EEEEEE EEEEV     VE+ GKGE+SCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG
Sbjct: 301 EEEEEEVEEEEV-----VEDAGKGEYSCCVCMVRHKGAAFIPCGHTFCRLCSRELFVQRG 359

Query: 361 NCPLCNNFILEILDIF 371
           NCPLCNNFILEILDIF
Sbjct: 361 NCPLCNNFILEILDIF 359
[Close]
BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Match: A0A068U5W1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016388001 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.900e-46
Identity = 150/321 (46.73%), Postives = 180/321 (56.07%), Query Frame = 1 

		  

Query: 57  VSNVTLGAVLNS-DRKSPPPANVVVRTLLEVIRNDETLTPATTGGGSPHSKKTWKSFKER 116
           +SN+TL AVL + DR   P      RTL+++IR D        GG S  ++K+W+ F+E+
Sbjct: 1   MSNLTLSAVLKTEDRSGGPMRTPSNRTLMDIIREDPN-----GGGYSKDTRKSWRHFREK 60

Query: 117 LKLRRHHHLSQNQNQNPNSHRWTSSLPVPQSDVI---PNSRSLSIAEMMANRNSLRSTSL 176
           L+LRR    S           WTSS+PVP SDV    P   S S   MM +R    ST L
Sbjct: 61  LRLRRQGSGSS----------WTSSVPVPASDVPIQHPMGGSSSSRRMMMSRRD--STRL 120

Query: 177 RRVDPVPADDLTLREQTD-SGGSPRSGSSF--RLSAALAAEREQTRRWLSRELDEGNRSR 236
                 P  D T +   D S G PRS SS   R  +     R    R +  E+       
Sbjct: 121 N----TPTPDQTSQPDADLSSGVPRSRSSMLQRNESRAIRGRYDNARGIDDEM-----GA 180

Query: 237 NENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLEETDRQAGISGPTYR 296
            E EE EG       E  +EE+G G    G    QP+RMSLM LL ETDRQ G+ G  + 
Sbjct: 181 EEGEETEG-------ETTEEEEGGG-GGTGGGEEQPVRMSLMALLAETDRQMGLDGSGFT 240

Query: 297 LDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSREL 356
           +DD+E+ +EEEEEEEE          G G  +CCVCMVRHKGAAFIPCGHTFCRLCSREL
Sbjct: 241 MDDDEDADEEEEEEEEGGAG------GGGYNNCCVCMVRHKGAAFIPCGHTFCRLCSREL 281

Query: 357 FVQRGNCPLCNNFILEILDIF 371
           +VQRGNCPLCNNFILEILDIF
Sbjct: 301 WVQRGNCPLCNNFILEILDIF 281
[Close]
BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Match: A5AEU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001939 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.300e-37
Identity = 135/335 (40.30%), Postives = 178/335 (53.13%), Query Frame = 1 

		  

Query: 58  SNVTLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGG-GSPHSKKTWKSFKERL 117
           + +TLGAVL  +++ PPP ++  RTLL++IR++ T      G   + ++K +WKSFK+RL
Sbjct: 23  AGLTLGAVLGCEKR-PPPGHIN-RTLLDIIRDESTGYKDVLGQPNNNNNKMSWKSFKDRL 82

Query: 118 KLRR------------------HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIA 177
           ++RR                     LS+ Q+     +      P    +  P +    + 
Sbjct: 83  RIRRAGAAWTSSMPIPASDVPTRSQLSRRQSTRVTMYTTDPPEPTETFEESPGTPENPLP 142

Query: 178 EMMANRNSLRSTSLRRVD-PVPADDLTLREQT--DSGGSPRSGSSFRLSAALAAEREQTR 237
                 ++LR    R      P+   +  + T   +G +     S RLSAALA ERE  R
Sbjct: 143 VEAVQVHNLRPQFSRNNSIRAPSRTFSRADSTRLHTGVTDGPVVSRRLSAALAEERELQR 202

Query: 238 RWLSRELDEGNRSRNENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLE 297
              +  L   +    E E          DE + EE+G   P   P      RMSLM LLE
Sbjct: 203 AESAAALGGDDDEAGEEE----------DEGEGEEEG---PEAAP------RMSLMALLE 262

Query: 298 ETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFI 357
           ETDRQAGI GP Y L++EE+E+EEEE +            G  E++CCVCMVRHKGAAFI
Sbjct: 263 ETDRQAGIVGPAYVLEEEEDEDEEEEGDSG----------GGIEYNCCVCMVRHKGAAFI 322

Query: 358 PCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
           PCGHTFCRLCSREL+V RGNCPLCN FILEILDIF
Sbjct: 323 PCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 326
[Close]
BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Match: F6I6Z1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0186g00090 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.300e-37
Identity = 135/335 (40.30%), Postives = 177/335 (52.84%), Query Frame = 1 

		  

Query: 58  SNVTLGAVLNSDRKSPPPANVVVRTLLEVIRNDETLTPATTGG-GSPHSKKTWKSFKERL 117
           + +TLGAVL  +++ PPP ++  RTLL++IR++ T      G   + ++K +WKSFK+RL
Sbjct: 23  AGLTLGAVLGCEKR-PPPGHIN-RTLLDIIRDESTGYKDVLGQPNNNNNKMSWKSFKDRL 82

Query: 118 KLRR------------------HHHLSQNQNQNPNSHRWTSSLPVPQSDVIPNSRSLSIA 177
           ++RR                     LS+ Q+     +      P    +  P +    + 
Sbjct: 83  RIRRAGAAWTSSMPIPASDVPTRSQLSRRQSTRVTMYTTDPPEPTETFEESPGTPENPLP 142

Query: 178 EMMANRNSLRSTSLRRVD-PVPADDLTLREQT--DSGGSPRSGSSFRLSAALAAEREQTR 237
                 ++LR    R      P+   +  + T   +G +     S RLSAALA ERE  R
Sbjct: 143 VEAVQVHNLRPQFSRNNSIRAPSRTFSRADSTRLHTGVTDGPVVSRRLSAALAEERELQR 202

Query: 238 RWLSRELDEGNRSRNENEENEGSPHGNLDEDDDEEDGEGIPNIGPPANQPMRMSLMDLLE 297
              +  L   +    E E          DE + EE+G   P   P      RMSLM LLE
Sbjct: 203 AESAAALGGDDDEAGEEE----------DEGEGEEEG---PEAAP------RMSLMALLE 262

Query: 298 ETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFI 357
           ETDRQAGI GP Y L++EE+E+EEEE              G  E++CCVCMVRHKGAAFI
Sbjct: 263 ETDRQAGIVGPAYVLEEEEDEDEEEEAGSG----------GGIEYNCCVCMVRHKGAAFI 322

Query: 358 PCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
           PCGHTFCRLCSREL+V RGNCPLCN FILEILDIF
Sbjct: 323 PCGHTFCRLCSRELWVSRGNCPLCNGFILEILDIF 326
[Close]
BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Match: AT3G07120.1 (RING/U-box superfamily protein)

HSP 1 Score: 129.4 bits (324), Expect = 4.500e-30
Identity = 76/142 (53.52%), Postives = 102/142 (71.83%), Query Frame = 1 

		  

Query: 233 EENEGSPHGNLDEDDDEED---GEGIPNIGPPANQPMR-MSLMDLLEETDRQAGISGPTY 292
           E    +  G+ DEDDD+E+   GE        A++P + MSLMDLLEETDRQ G++G  Y
Sbjct: 220 EAEAAAAGGSEDEDDDDEEDDSGETEEMKSSSASEPKQTMSLMDLLEETDRQMGLTGSRY 279

Query: 293 RLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRE 352
            + DE+EE EE+EE+E  E E +    G+GE SCCVCMV+ KGA+F PCGHTFC+LCS+E
Sbjct: 280 AM-DEDEEYEEDEEDENNEEEGDSHGGGEGELSCCVCMVKIKGASFTPCGHTFCKLCSKE 339

Query: 353 LFVQRGNCPLCNNFILEILDIF 371
           L  Q+G+CP+C++F+LE L+IF
Sbjct: 340 LMAQKGHCPVCSSFVLEFLEIF 360
[Close]
BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Match: AT3G25030.1 (RING/U-box superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 2.300e-26
Identity = 61/107 (57.01%), Postives = 69/107 (64.49%), Query Frame = 1 

		  

Query: 264 QPMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCC 323
           +P RMSLM+LLEE + Q                        + E EEEV  +   E SCC
Sbjct: 162 EPARMSLMELLEENEGQMSFVSV------------------DGEAEEEVAAVTAAEISCC 221

Query: 324 VCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
           VCMVR KGAAFIPCGHTFCRLCSREL+VQRGNCPLCN  ILE+LD+F
Sbjct: 222 VCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250
[Close]
BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Match: AT4G13100.2 (RING/U-box superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 3.800e-21
Identity = 70/142 (49.30%), Postives = 83/142 (58.45%), Query Frame = 1 

		  

Query: 232 NEENEGSPHGNLDEDDDEEDGEGIPNIGP---PANQPMRMSLMDLLEETDRQAGISGPTY 291
           N E   S     D  ++  + EG   +G       +P RMSLM+LLE+ D      G  Y
Sbjct: 131 NSETNRSSRDVSDAAEEAAEREGRLRLGTVLAAEREPPRMSLMELLEDND------GHMY 190

Query: 292 RLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCVCMVRHKGAAFIPCGHTFCRLCSRE 351
            L   +E E E  +  +    E V   G  E  CCVCMVR KGAAFIPCGHTFCRLCSRE
Sbjct: 191 ELSARDEVEVEGRDGCDGG-GEAVAVTGAAELGCCVCMVRSKGAAFIPCGHTFCRLCSRE 250

Query: 352 LFVQRGNCPLCNNFILEILDIF 371
           L+VQRGNCPLCN  IL++LDIF
Sbjct: 251 LWVQRGNCPLCNTAILQVLDIF 265
[Close]
BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Match: AT4G03965.1 (RING/U-box superfamily protein)

HSP 1 Score: 90.9 bits (224), Expect = 1.800e-18
Identity = 53/107 (49.53%), Postives = 65/107 (60.75%), Query Frame = 1 

		  

Query: 265 PMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFS-CC 324
           P+++SLM LLEET  +  +               EE E E V         G    S CC
Sbjct: 118 PLKVSLMRLLEETAERVVV---------------EENETERVTASASSTVRGVNNDSVCC 177

Query: 325 VCMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
           VCM R KGAAFIPCGHTFCR+CSRE+++ RG+CPLCN  I+EILDI+
Sbjct: 178 VCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209
[Close]
BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Match: AT4G22250.1 (RING/U-box superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-18
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 1 

		  

Query: 265 PMRMSLMDLLEETDRQAGISGPTYRLDDEEEEEEEEEEEEEVEVEEEVEELGKGEFSCCV 324
           P R+SLM LLEET  +         +DD+ +E E         +   +  L   +  CCV
Sbjct: 125 PRRVSLMRLLEETAEKI--------VDDDGKETEI--------LTASIGTLTGNDSVCCV 184

Query: 325 CMVRHKGAAFIPCGHTFCRLCSRELFVQRGNCPLCNNFILEILDIF 371
           CM R KGAAFIPCGHTFCR+CSREL++ RG+CPLCN  I+EILDIF
Sbjct: 185 CMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214
The following BLAST results are available for this feature:
BLAST of Spo01279.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902208821|gb|KNA16038.1|1.8e-19899.7hypothetical protein SOVF_0928... [more]
gi|731347513|ref|XP_010685024.1|5.4e-14275.8PREDICTED: E3 ubiquitin-protei... [more]
gi|661892728|emb|CDP03886.1|5.6e-4646.7unnamed protein product [Coffe... [more]
gi|1009149507|ref|XP_015892515.1|4.6e-4038.8PREDICTED: uncharacterized pro... [more]
gi|694390217|ref|XP_009370684.1|2.3e-3941.3PREDICTED: uncharacterized pro... [more]
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BLAST of Spo01279.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R914_SPIOL1.3e-19899.7Uncharacterized protein OS=Spi... [more]
A0A0J8C006_BETVU3.8e-14275.8Uncharacterized protein OS=Bet... [more]
A0A068U5W1_COFCA3.9e-4646.7Uncharacterized protein OS=Cof... [more]
A5AEU5_VITVI3.3e-3740.3Putative uncharacterized prote... [more]
F6I6Z1_VITVI7.3e-3740.3Putative uncharacterized prote... [more]
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BLAST of Spo01279.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01279.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G07120.14.5e-3053.5RING/U-box superfamily protein[more]
AT3G25030.12.3e-2657.0RING/U-box superfamily protein[more]
AT4G13100.23.8e-2149.3RING/U-box superfamily protein[more]
AT4G03965.11.8e-1849.5RING/U-box superfamily protein[more]
AT4G22250.12.3e-1850.9RING/U-box superfamily protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 322..359
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 322..360
score: 10
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 308..363
score: 4.6
NoneNo IPR availableunknownCoilCoilcoord: 289..318
scor
NoneNo IPR availablePANTHERPTHR12183UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEINcoord: 108..370
score: 8.0
NoneNo IPR availablePANTHERPTHR12183:SF11C3HC4 TYPE RING-FINGER PROTEIN-RELATEDcoord: 108..370
score: 8.0
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 321..363
score: 7.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 321..366
score: 1.37

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression