Spo01217 (gene)

Overview
NameSpo01217
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 58139097 .. 58139889 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGTGGTAACTGGAAAGGTAACCGTAACAGTAGCAGCCAAGGAAGAATACGGAACGCGCACACAAAAACACACACCTCTTCTTACCTTCCACCATTTCACTCTTTTCGAGACTTTTCCTTTCTCTTTCTCTCTCTCTCTCTTTCTTCTTTAATTTGGTTTTTCTTCCATTAATTATTCATTCATTACCAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGGTTAGTGTCTTCGCAAATCCCTACCCACCTTATTCGCTTTTTTGTTTGCTTCCCACTTTATTTTTCTCCATTTTTTATACTTTATGTGTTCACATTCTTTGTTTTTCTGGGTAATTATGTTTTCATATTATTATATTTTTTCTTCTTCTTGAAATTGGTTTTGCTCCCTTTTCGCCGTGATCTATGTGTGTTTTCTTCCTTCTATTCTGATAATTAATTATTCATTTTGTACTGGGTTGATGCTGATTTTTTTTTAATATAATTACTTTTAGTCAATTTTTATTTGAATTATGTTCAATTAGTTAGAATTGGGATCTGTGTTTTGTGGGTTGATAACTTGATATGATAAACTGAAAATTTTGTTCGCCTTTTTGTTTGTATAGAGAACTGAATAG

mRNA sequence

ATGAGCGGTGGTAACTGGAAAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGAGAACTGAATAG

Coding sequence (CDS)

ATGAGCGGTGGTAACTGGAAAGTAAATTCAATTCAATTTAATTTCAATTTTAAAATCCCCCATGTGATTACTACTCCGTTTGTCCTGGTATTTATCTGTTCCATTTTCCACCATTATTTTATACACACGACCCCTTCTCTTCTTCCTTCCACTTTGGAGAGAGAAAGTGGAGAGAGAAACACCAAAACTGTGAATTCTCCAAGAATCCCAACTTCTTCTCCCCAGAGAACTGAATAG

Protein sequence

MSGGNWKVNSIQFNFNFKIPHVITTPFVLVFICSIFHHYFIHTTPSLLPSTLERESGERNTKTVNSPRIPTSSPQRTE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01217.1Spo01217.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo01217.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01217.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01217.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01217.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071554 cell wall organization or biogenesis
biological_process GO:0006810 transport
biological_process GO:0016573 histone acetylation
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0000785 chromatin
molecular_function GO:0005215 transporter activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo053070.79Barchart | Table
Spo255730.74Barchart | Table
Spo146300.73Barchart | Table
Spo154610.73Barchart | Table
Spo137830.73Barchart | Table
Spo186050.72Barchart | Table
Spo170240.72Barchart | Table
Spo084780.72Barchart | Table
Spo266100.72Barchart | Table
Spo266400.71Barchart | Table
Spo010680.71Barchart | Table
Spo029180.71Barchart | Table
Spo250080.71Barchart | Table
Spo254050.70Barchart | Table
Spo158430.70Barchart | Table
Spo093870.70Barchart | Table
Spo108980.70Barchart | Table
Spo108350.70Barchart | Table
Spo033620.70Barchart | Table
Spo256330.69Barchart | Table
Spo161880.69Barchart | Table
Spo028900.69Barchart | Table
Spo054020.69Barchart | Table
Spo263550.69Barchart | Table
Spo089350.69Barchart | Table
Spo246750.69Barchart | Table
Spo268580.69Barchart | Table
Spo243310.69Barchart | Table
Spo273640.69Barchart | Table
Spo218330.69Barchart | Table
Spo220040.68Barchart | Table
Spo162400.68Barchart | Table
Spo131610.68Barchart | Table
Spo005260.67Barchart | Table
Spo011040.67Barchart | Table
Spo011870.67Barchart | Table
Spo019250.67Barchart | Table
Spo052350.67Barchart | Table
Spo095540.67Barchart | Table
Spo096710.67Barchart | Table
Spo153170.67Barchart | Table
Spo179790.67Barchart | Table
Spo189430.67Barchart | Table
Spo240650.67Barchart | Table
Spo244250.67Barchart | Table
Spo244300.67Barchart | Table
Spo266970.67Barchart | Table
Spo185780.66Barchart | Table
Spo024800.66Barchart | Table
Spo056570.66Barchart | Table
Spo149140.66Barchart | Table
Spo143500.66Barchart | Table
Spo131710.66Barchart | Table
Spo031910.66Barchart | Table
Spo115240.66Barchart | Table
Spo209120.66Barchart | Table
Spo213440.66Barchart | Table
Spo108900.66Barchart | Table
Spo099480.66Barchart | Table
Spo220860.66Barchart | Table
Spo221670.66Barchart | Table
Spo233320.66Barchart | Table
Spo237870.66Barchart | Table
Spo007930.66Barchart | Table
Spo243250.66Barchart | Table
Spo096050.66Barchart | Table
Spo270810.66Barchart | Table
Spo094340.66Barchart | Table
Spo084070.66Barchart | Table
Spo078020.66Barchart | Table
Spo061640.66Barchart | Table
Spo196900.65Barchart | Table
Spo015110.65Barchart | Table
Spo224360.65Barchart | Table
Spo224510.65Barchart | Table
Spo086030.65Barchart | Table
Spo139630.65Barchart | Table