Spo01180 (gene)

Overview
NameSpo01180
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 58813399 .. 58814047 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAGGAAATCGAGTAAGATTCACGATATCATGGACGAGAAAGGGAAAGATGGAGAAAAAAAAGAGGTTCATAAGAAGACAGGGCTTTCTGTGTACCAATATCAAGGAAAGCCTGGTCAGTTCTATTCTCCTGTAGAAAAAAGCAGCTATTGTATGAAATATGTTACTGGCAAAAATTTGCCATAGGCCATGTAATTTAGAAATAGTTCTTTTATTTTGTTAGTTACTCCGTAATAAATAATTTTGCTCAATTTTTATTTACCGTTCTTTATTGCGAGACCGTAGGAGTAAAAAAGAAAAACGGAGGCGGAAATGCCCCCTTGGGGAAGCTGGATAAGGATGTTCGTGGGAGATATGCTCATGTGCGTGGAGGTTCAAGTGTTCAACTGTGTATGTATATCTTAGAATTGATGTAGAAAAACTTGGTTTTTCGTCAATAATCATTTCATTCAATTCACTTCTAAGATATATCCGTTGGTAGTTAGAAAGATTGTATATAAATTAACTCGCAGAATCGTTATTTTTAAGAACGTCTCACAAGAAAGCTTTTTCTAAGAACATTGTGAATTTTGATGAATTGACTAGAGATGCCAAAACATCACAACTTTAACTGATTATGGAATAATATAATAACTTAATTATTCGG

mRNA sequence

ATGATGAGGAAATCGAGTAAGATTCACGATATCATGGACGAGAAAGGGAAAGATGGAGAAAAAAAAGAGGTTCATAAGAAGACAGGGCTTTCTGTGTACCAATATCAAGGAAAGCCTGGAGTAAAAAAGAAAAACGGAGGCGGAAATGCCCCCTTGGGGAAGCTGGATAAGGATGTTCGTGGGAGATATGCTCATGTGCGTGGAGGTTCAAGTGTTCAACTGTGTATGTATATCTTAGAATTGATGTAGAAAAACTTGGTTTTTCGTCAATAATCATTTCATTCAATTCACTTCTAAGATATATCCGTTGGTAGTTAGAAAGATTGTATATAAATTAACTCGCAGAATCGTTATTTTTAAGAACGTCTCACAAGAAAGCTTTTTCTAAGAACATTGTGAATTTTGATGAATTGACTAGAGATGCCAAAACATCACAACTTTAACTGATTATGGAATAATATAATAACTTAATTATTCGG

Coding sequence (CDS)

ATGATGAGGAAATCGAGTAAGATTCACGATATCATGGACGAGAAAGGGAAAGATGGAGAAAAAAAAGAGGTTCATAAGAAGACAGGGCTTTCTGTGTACCAATATCAAGGAAAGCCTGGAGTAAAAAAGAAAAACGGAGGCGGAAATGCCCCCTTGGGGAAGCTGGATAAGGATGTTCGTGGGAGATATGCTCATGTGCGTGGAGGTTCAAGTGTTCAACTGTGTATGTATATCTTAGAATTGATGTAG

Protein sequence

MMRKSSKIHDIMDEKGKDGEKKEVHKKTGLSVYQYQGKPGVKKKNGGGNAPLGKLDKDVRGRYAHVRGGSSVQLCMYILELM
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo01180.1Spo01180.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo01180.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01180.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01180.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo01180.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0033036 macromolecule localization
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0016567 protein ubiquitination
biological_process GO:0051302 regulation of cell division
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009561 megagametogenesis
biological_process GO:0007276 gamete generation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0071702 organic substance transport
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005819 spindle
molecular_function GO:0005488 binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo123640.78Barchart | Table
Spo235800.74Barchart | Table
Spo173860.74Barchart | Table
Spo018410.73Barchart | Table
Spo031490.72Barchart | Table
Spo018010.72Barchart | Table
Spo235070.72Barchart | Table
Spo168040.72Barchart | Table
Spo146610.72Barchart | Table
Spo106610.72Barchart | Table
Spo280700.71Barchart | Table
Spo056400.71Barchart | Table
Spo040820.71Barchart | Table
Spo271150.71Barchart | Table
Spo240660.71Barchart | Table
Spo209120.71Barchart | Table
Spo192450.71Barchart | Table
Spo175470.71Barchart | Table
Spo015310.71Barchart | Table
Spo172350.71Barchart | Table
Spo022800.71Barchart | Table
Spo030020.70Barchart | Table
Spo031960.70Barchart | Table
Spo038650.70Barchart | Table
Spo050930.70Barchart | Table
Spo076940.70Barchart | Table
Spo081500.70Barchart | Table
Spo149420.70Barchart | Table
Spo208580.70Barchart | Table
Spo216000.70Barchart | Table
Spo245900.70Barchart | Table
Spo031950.69Barchart | Table
Spo074150.69Barchart | Table
Spo067290.69Barchart | Table
Spo268140.69Barchart | Table
Spo059280.69Barchart | Table
Spo258510.69Barchart | Table
Spo204970.69Barchart | Table
Spo100190.69Barchart | Table
Spo021750.69Barchart | Table
Spo060180.69Barchart | Table
Spo125430.68Barchart | Table
Spo071990.68Barchart | Table
Spo229550.68Barchart | Table
Spo229700.68Barchart | Table
Spo172910.68Barchart | Table
Spo027470.68Barchart | Table
Spo268340.68Barchart | Table
Spo158650.68Barchart | Table
Spo164210.68Barchart | Table
Spo018400.68Barchart | Table
Spo064640.68Barchart | Table
Spo104210.68Barchart | Table
Spo270040.68Barchart | Table
Spo008120.68Barchart | Table
Spo259170.68Barchart | Table
Spo186460.68Barchart | Table
Spo112430.68Barchart | Table
Spo247060.68Barchart | Table
Spo003910.68Barchart | Table
Spo172090.67Barchart | Table
Spo056030.67Barchart | Table
Spo174900.67Barchart | Table
Spo058970.67Barchart | Table
Spo247360.67Barchart | Table
Spo198400.67Barchart | Table
Spo237720.67Barchart | Table
Spo002830.67Barchart | Table
Spo209090.67Barchart | Table
Spo214190.67Barchart | Table
Spo214650.67Barchart | Table
Spo235270.67Barchart | Table
Spo003990.67Barchart | Table
Spo233550.67Barchart | Table
Spo097640.67Barchart | Table
Spo232860.67Barchart | Table
Spo104270.67Barchart | Table
Spo105000.67Barchart | Table
Spo052270.67Barchart | Table
Spo066730.67Barchart | Table
Spo109660.67Barchart | Table
Spo069620.67Barchart | Table
Spo258790.67Barchart | Table
Spo046860.67Barchart | Table
Spo037350.67Barchart | Table
Spo139520.67Barchart | Table
Spo140840.67Barchart | Table
Spo036080.67Barchart | Table
Spo076090.67Barchart | Table
Spo012160.66Barchart | Table
Spo064650.66Barchart | Table
Spo070790.66Barchart | Table
Spo075860.66Barchart | Table
Spo082750.66Barchart | Table
Spo083270.66Barchart | Table
Spo084350.66Barchart | Table
Spo098420.66Barchart | Table
Spo099400.66Barchart | Table
Spo099930.66Barchart | Table
Spo001610.66Barchart | Table
Spo106730.66Barchart | Table
Spo119110.66Barchart | Table
Spo119190.66Barchart | Table
Spo029840.66Barchart | Table
Spo132380.66Barchart | Table
Spo133180.66Barchart | Table
Spo134920.66Barchart | Table
Spo140960.66Barchart | Table
Spo144030.66Barchart | Table
Spo271020.66Barchart | Table
Spo152750.66Barchart | Table
Spo013970.66Barchart | Table
Spo174450.66Barchart | Table
Spo013130.66Barchart | Table
Spo178870.66Barchart | Table
Spo181790.66Barchart | Table
Spo229400.66Barchart | Table
Spo233200.66Barchart | Table
Spo003970.66Barchart | Table
Spo236000.66Barchart | Table
Spo239350.66Barchart | Table
Spo240920.66Barchart | Table
Spo001900.66Barchart | Table
Spo253300.66Barchart | Table
Spo266720.66Barchart | Table
Spo041040.66Barchart | Table
Spo046820.66Barchart | Table
Spo268330.66Barchart | Table
Spo051270.66Barchart | Table
Spo187760.65Barchart | Table
Spo181300.65Barchart | Table
Spo055790.65Barchart | Table
Spo179260.65Barchart | Table
Spo227340.65Barchart | Table
Spo222560.65Barchart | Table
Spo272390.65Barchart | Table
Spo121550.65Barchart | Table
Spo088500.65Barchart | Table
Spo206960.65Barchart | Table
Spo054870.65Barchart | Table
Spo051920.65Barchart | Table
Spo072910.65Barchart | Table
Spo071840.65Barchart | Table
Spo245980.65Barchart | Table