Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGTCCATATAATTATAGATAATCAATCATCTTTAAATCGATCCTTAAATTTCTTAATTTCCTCACATCTTTTTCCCAAAAGTAAAAGGAACAATAAATCATAGACCCGCCAAAAAGGACAAAACTCCCCACCTTCCCCTCCCCTTTCACAAATGTCATACGTTTTCATGTACTTCAACAAAAACACACCACACTTTCTCTCTCTTCACTAACAAAAACACAAAACAAACTCCCATTTTCTCTCTCCTAAACAAATTCCCTGTTCTTTCTTCCCCACTCTCATCACAGATTCACAGTACAGCCAGAAACAGAGAGAGAAAGATGGGATCTGAAGAAGAAGGAACAGAAACAGAGCATGGAAGTGAAATCCCAAAACTACCCTTATACACACTACCCTCTCTAAAATCAACACAACAACAACAACATTCAACAAACTTATTAACATCACCCTTACACACTTCAGCTTCAGCCTCAGTCTCAGTGCCCTTCAAATGGGAGGAACATCCTGGAAAGCCCTTACCTTGTCTTGAACTTGCCCTTCCTTCTTCTTCTTCTTCATCTTCTACAACAACAATTAAGTCCCTAGAATTGCCTCCAAGGTTGCTCAATGAGACTAAATTTACCAAAACACCCTCCCCTACAACCGTCCTAGAGGGTCCGTACAGTTACAGTAATTCTGCTACTGTAGGAAAGTCCTTCTCTTTTAGGTTTCTTAGGAAAAGACAAGGGTCCTTCGATGGTTCCATTAGTTTTGGGGGTAGTCGAGGAAGTAGCCCTGAAAGAGGCTTGCTTGGGACAATTGTTCTTAGCCGCAGCAGCAGTGTTAGTAGGAGAGAGATTAATACTAATACTAATACTACGACTAAGGGCTTGTTTGGTTCTTGGATGAAAAGAGGTGGGAATAATAGTAATTTCAAAGGTAAAAACAGTGATGTTCATGGGGGTAAATTCGTCTTTCCAGGTTTCCTCTCCGATGATGGTATTACAGGTACGGATGACGGTGGTGAAGCAACTGTTCAGGTTACAAAGATGGGTAAAAAGGGCAAGTTCTTGGGTTTGTCATCAAGCAGCAGCAAGTCTCACTTCTGGGTAAGTTTTGTTTATTATTATTATTATCCGTTTTTACTATTTTTGATGTTTTAGTAATTTTGTCTCAAAAAAGGTGAGAAGTTTAGTTAAGTTTGTGTGGTTTTGATTAATTGGGGTTATCAAAAGTTGTCAGAAATGTGTTTTTCATGGTCTTAAAGTACGTAGACTAATGTCAGAATGTGTATTACTTTGAGATGATCTAAGAATACTGTGTCTAAGCAGTGGTGTTGTGTTATGGCTACGTTAACAGCTTAACATAATTAGGTAGCAAATTGTGATTCATTTCGGGTATTAAAACCGCAGATTAGGTAACACTGTCTATGAATTGAAGGGTAGAAAAACTTATTGACTTTTAAAAGTAAGAAGAGATGATGAAAAGTATCCTAAGTTGTACAGTAAGTTCCTAACCACCATATCTGTCACACTGGTACAGTGATACCTGCTCTGTGTTCAATGATAGAGCAGAATCACCAGTTGCAAAAGTGCACATTACTACATTCCATCCTTATAGTTATTATTTTGAACTTTATTTGGAAAATTGTAATAGGCTTAAGCCTTAAGGCCATGGCTTGGTTTAAATTAATGAATGTTTCTGTTTTCACCAAAAAAAGAAACAGTTAGGCTATTAACATGGTGCGAATGAGCTACATAGGTCAAGGGTAATACAAGTTACAAATAGGGCTGAGGGATTTGTACCCAAGACATATCATGCACATACCCATTGTTACCTGATTCGCTAGTGCGAGATTGGGTACAGGTTCACAATTCGCTACCTAATTTTCTTATTTACACCAAAATTATACCATTCATGTTATAATTCGCCTTTTCGATTCGTGGTTCATGGGCTGATTAGAAAATTAGGTAACACTGCACAGACCATTAGTCTTAACTAAGGCTTCACTAGTATCGAACTACATCTAGTATTTAACGTTTCATTCTCCGTTAGTTGCCTAACTCGTCAGGAAATAGATTTTTTTTTTCCCTAAGAAGAGTAGATCGAATGAATATTCAGGAACAACATTGAAGGGTGTTTGAATAAACTCTGCTTGAGAATGTTTATTCTGTCTGTCTCCGTTGTACGGAGTAGTTTGGACAATTTTAGTTGAAAGGGGGGAAGAACAGGCCAAATGTACAAATGATTTTGGGACCAAAGTTATTTGAATTGGGGAAAAAAGAGCGCCTTTTGATATTTTGAATTTAGTTTCGAACCTAAACGCTTTGGCCTTTTGATGCTTAAAGTTCTACTCACCTTTTAAGGGCATCTTGATTTCTCAATTGCATAAAACTGGCTTTTAATCTTTGTTCATAAAAAGCATAGGTTGCAGAATTACCATTTCGTAAGCTGTGTTCGGGGTTAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATGCTATTTTATAAGTTGTGTTCGGGGTAGTTATTGTCTATCGCTGGCCTCATGGTAGAATGCCATTTTATAAACCGTGTTTGGGGTAGTTATTGTCTATCGTTGGCCTCTATGGTAGTAGTCATTCCGTTGGGGTCCAGAGGTATATACTCTCTAAGTTCAGGACACATTAAACATTAATACAGAGAGAGTACATTTAATAAATTCCAACTATTTTGAGCATCAAACTAGGAATTATTTTTAGACAATAGTACACAAACTATACAATAATAATTCTTTAGGTGGGGAGATTGTAACTAATTTTGCTCACACCATTAAGACATCTAGTGATGCTATATCTATGTACTTTTAGCATATATAAGGATGTTTGGGGTTTCTCCTACTAAACTCAGAACATGAGTACCCTTTATCTTTCCGTGGTCGTATAACCAATTCTACAAGTGTTCAAGTTGAGCCATAACAGATCTGAAGACTTATGTTACCCGGACTCAGATACCCATATCGGACACAGGTATGGGTTCAAGTGTCCGACACAACTATATATATATATATATATGAAGAGTCCAGGTAACCGAGCTAAAGACAATGTTGAGGGCAATTTTAGGAAATGGAAAAGTTTCTATAAAATGGTGTTCCTTCAAGGAGGATCAGTCATTGATTAGTACTATCACACTTGTTGAGTGGGTGGGTGGGTGGTGAGGTTAATTCCCTCAAGGTAACATTATTTGGTAAGTGAGAAGGAAAATGATGATAGCATGATAATGACATACAACAGTGCTTCATTAAGAGGTCATTGCTAACCACCTCTCCTTTTCTCCTATTTGGAAATCTAAACTACCAATAAATATGACAATTAACAAACTTACTTCCCATTTCCAACACTCCAACACCAATACATAACATGATATAGTAGGGATATGTTAATTTCTACTCATTATCAAGGTGGTTTAGGGTCCTAAAAAGGAATACCTTAATTGTACACTAGGGTTAGGGGTTTTGATTACCGATAAGTAGGATAACGAATTGATTATTGATAAGTGATAACTCCTATTACCATATCTAGAATTCTAGTAATCAACAAGGAATGTAAGGTTTTGCCATTTTAGAGATGATAACTTTATCCAAATGATGGGCAAAATCGCCCAACCTCAGGATTTTAGTCAGAAAACTCCCTGGGATTGAATCTTTTTCGCTCATCTTTGAGATAGATTTATCATACTCTAATTATTCCTTTAGAAAAAGTGCAGAAACCACCTACTAAAACCCATTGTAGGGCCATCAATTTTGACATTGGCTAATATTAAGCATTGATTTGTTGTGTGATTAATACTTTTATCCATAAATGGGTGCAAATATTTCCTTATGACTTTTCTTAGGGGAGGTGAAAAAAGGGTACTCAGATCTGTGTGACGTAAGCACCAAATAGAGCAGCATAGGGTTCGTATTAAATTCTTAATGGTCCTACAATAACATCATTATACAACCACTAAGTTTTCTTTTAGGTTACAAACTTACAACTACTACATTGTTTAAGCCATAATACTAATCATACTCCATATTCAAGGAGCAATAGGGCATCATATTATAGCAGTACGGAGTAGGTCTTAAAGATATTTATGTTTTGTCTTCAGTGACGATCTTTAATATCGCACTTTCATCAAGCAATCACAAAAACGAACTCGACCAATTGTCTGTTGGTTCAGTGGTGATTGGGGCTGAACTTGCTAAGGAGAACTCGTGTTCGGTCCCCCGCAACAACAGTTGAGAGGGGACCGAAACCTATCCACCTAGAACTCGCCCCGAATCCGGATTATCCCTAACGGTGAACCGGATGCTAACACCCAAAAAAAAGAAAACAAAAACGAACTCGACCTGATTAACCATAGTCCTACACTCCTCCTGCTGGCCCGATCCAACCCGAAAAGCGTGAGTTTGGGTTCCCTAAAATATGCATTTTAGACTAAAACCCAAGCCCGGCCCGAAAAAGCTTGTTTCAGCCTGCAAAGCCAAACTAAATACTTATATGGGTTTGGGCATGATTTTTTGGTGTTAAAGCCCAGAACGGCTCAAATATTAATCACCTATAATACGAACAATATAGCATGCTCCTTCCGTCCTTACATAAATGTCACATTTGATTTTTTATTTATTTTAGTTTATACTCTAATAAAAGCTGCATATAGTGTGTATTTAAGAATATACTGAAAAGTGAGTGATAATGGTGCAGGCAAGCATATATGGGGCCTTCAAGCAAGTGATACCCAGTCCCAGGAAAAGTACGAAGTGGAAGAAAGATGCCTGGTAAACTAACCCCATCTCTCTTATCCTTTGCCAGTAACAAGTCCCCATCGATTTGCCACCAATCCAAAGTGCCTGTCTCTAAACATTTGCTCTATCTTACCCCCTCTAATTAAAGCGTGCTCTCTCTATCTCCCTCGTTCTCTCCTTTTCTATCCCTTTGATGAGAACGACACGAACTGTCGAATATTCATTCATAAGATGTATACATGAAATTATATTTTCTGTAGTGTTTGAATTAGTATCGAAGAACATGTAGTTACTGATTATGAGTATTTTATTACAGTTTGTACTTCAATGTGTGTAAATTTTTACTGGTACTTACCCTGAAATTTGAACTTCCTGTTCTGGTGACCTCAATAAACATGTCATCAAATTTCGCTA AGTCCATATAATTATAGATAATCAATCATCTTTAAATCGATCCTTAAATTTCTTAATTTCCTCACATCTTTTTCCCAAAAGTAAAAGGAACAATAAATCATAGACCCGCCAAAAAGGACAAAACTCCCCACCTTCCCCTCCCCTTTCACAAATGTCATACGTTTTCATGTACTTCAACAAAAACACACCACACTTTCTCTCTCTTCACTAACAAAAACACAAAACAAACTCCCATTTTCTCTCTCCTAAACAAATTCCCTGTTCTTTCTTCCCCACTCTCATCACAGATTCACAGTACAGCCAGAAACAGAGAGAGAAAGATGGGATCTGAAGAAGAAGGAACAGAAACAGAGCATGGAAGTGAAATCCCAAAACTACCCTTATACACACTACCCTCTCTAAAATCAACACAACAACAACAACATTCAACAAACTTATTAACATCACCCTTACACACTTCAGCTTCAGCCTCAGTCTCAGTGCCCTTCAAATGGGAGGAACATCCTGGAAAGCCCTTACCTTGTCTTGAACTTGCCCTTCCTTCTTCTTCTTCTTCATCTTCTACAACAACAATTAAGTCCCTAGAATTGCCTCCAAGGTTGCTCAATGAGACTAAATTTACCAAAACACCCTCCCCTACAACCGTCCTAGAGGGTCCGTACAGTTACAGTAATTCTGCTACTGTAGGAAAGTCCTTCTCTTTTAGGTTTCTTAGGAAAAGACAAGGGTCCTTCGATGGTTCCATTAGTTTTGGGGGTAGTCGAGGAAGTAGCCCTGAAAGAGGCTTGCTTGGGACAATTGTTCTTAGCCGCAGCAGCAGTGTTAGTAGGAGAGAGATTAATACTAATACTAATACTACGACTAAGGGCTTGTTTGGTTCTTGGATGAAAAGAGGTGGGAATAATAGTAATTTCAAAGGTAAAAACAGTGATGTTCATGGGGGTAAATTCGTCTTTCCAGGTTTCCTCTCCGATGATGGTATTACAGGTACGGATGACGGTGGTGAAGCAACTGTTCAGGTTACAAAGATGGGTAAAAAGGGCAAGTTCTTGGGTTTGTCATCAAGCAGCAGCAAGTCTCACTTCTGGGCAAGCATATATGGGGCCTTCAAGCAAGTGATACCCAGTCCCAGGAAAAGTACGAAGTGGAAGAAAGATGCCTGGTAAACTAACCCCATCTCTCTTATCCTTTGCCAGTAACAAGTCCCCATCGATTTGCCACCAATCCAAAGTGCCTGTCTCTAAACATTTGCTCTATCTTACCCCCTCTAATTAAAGCGTGCTCTCTCTATCTCCCTCGTTCTCTCCTTTTCTATCCCTTTGATGAGAACGACACGAACTGTCGAATATTCATTCATAAGATGTATACATGAAATTATATTTTCTGTAGTGTTTGAATTAGTATCGAAGAACATGTAGTTACTGATTATGAGTATTTTATTACAGTTTGTACTTCAATGTGTGTAAATTTTTACTGGTACTTACCCTGAAATTTGAACTTCCTGTTCTGGTGACCTCAATAAACATGTCATCAAATTTCGCTA ATGGGATCTGAAGAAGAAGGAACAGAAACAGAGCATGGAAGTGAAATCCCAAAACTACCCTTATACACACTACCCTCTCTAAAATCAACACAACAACAACAACATTCAACAAACTTATTAACATCACCCTTACACACTTCAGCTTCAGCCTCAGTCTCAGTGCCCTTCAAATGGGAGGAACATCCTGGAAAGCCCTTACCTTGTCTTGAACTTGCCCTTCCTTCTTCTTCTTCTTCATCTTCTACAACAACAATTAAGTCCCTAGAATTGCCTCCAAGGTTGCTCAATGAGACTAAATTTACCAAAACACCCTCCCCTACAACCGTCCTAGAGGGTCCGTACAGTTACAGTAATTCTGCTACTGTAGGAAAGTCCTTCTCTTTTAGGTTTCTTAGGAAAAGACAAGGGTCCTTCGATGGTTCCATTAGTTTTGGGGGTAGTCGAGGAAGTAGCCCTGAAAGAGGCTTGCTTGGGACAATTGTTCTTAGCCGCAGCAGCAGTGTTAGTAGGAGAGAGATTAATACTAATACTAATACTACGACTAAGGGCTTGTTTGGTTCTTGGATGAAAAGAGGTGGGAATAATAGTAATTTCAAAGGTAAAAACAGTGATGTTCATGGGGGTAAATTCGTCTTTCCAGGTTTCCTCTCCGATGATGGTATTACAGGTACGGATGACGGTGGTGAAGCAACTGTTCAGGTTACAAAGATGGGTAAAAAGGGCAAGTTCTTGGGTTTGTCATCAAGCAGCAGCAAGTCTCACTTCTGGGCAAGCATATATGGGGCCTTCAAGCAAGTGATACCCAGTCCCAGGAAAAGTACGAAGTGGAAGAAAGATGCCTGGTAA MGSEEEGTETEHGSEIPKLPLYTLPSLKSTQQQQHSTNLLTSPLHTSASASVSVPFKWEEHPGKPLPCLELALPSSSSSSSTTTIKSLELPPRLLNETKFTKTPSPTTVLEGPYSYSNSATVGKSFSFRFLRKRQGSFDGSISFGGSRGSSPERGLLGTIVLSRSSSVSRREINTNTNTTTKGLFGSWMKRGGNNSNFKGKNSDVHGGKFVFPGFLSDDGITGTDDGGEATVQVTKMGKKGKFLGLSSSSSKSHFWASIYGAFKQVIPSPRKSTKWKKDAW Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo01142.1 vs. NCBI nr
Match: gi|902201186|gb|KNA13927.1| (hypothetical protein SOVF_112220 [Spinacia oleracea]) HSP 1 Score: 544.3 bits (1401), Expect = 1.300e-151 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 1
BLAST of Spo01142.1 vs. NCBI nr
Match: gi|731311246|ref|XP_010696054.1| (PREDICTED: uncharacterized protein At4g00950 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 296.2 bits (757), Expect = 6.000e-77 Identity = 187/297 (62.96%), Postives = 211/297 (71.04%), Query Frame = 1
BLAST of Spo01142.1 vs. NCBI nr
Match: gi|661887528|emb|CDP08659.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 159.8 bits (403), Expect = 6.700e-36 Identity = 118/267 (44.19%), Postives = 151/267 (56.55%), Query Frame = 1
BLAST of Spo01142.1 vs. NCBI nr
Match: gi|225470930|ref|XP_002264990.1| (PREDICTED: uncharacterized protein At4g00950 [Vitis vinifera]) HSP 1 Score: 134.8 bits (338), Expect = 2.300e-28 Identity = 105/281 (37.37%), Postives = 144/281 (51.25%), Query Frame = 1
BLAST of Spo01142.1 vs. NCBI nr
Match: gi|567904664|ref|XP_006444820.1| (hypothetical protein CICLE_v10021650mg [Citrus clementina]) HSP 1 Score: 130.6 bits (327), Expect = 4.400e-27 Identity = 101/283 (35.69%), Postives = 146/283 (51.59%), Query Frame = 1
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R523_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_112220 PE=4 SV=1) HSP 1 Score: 544.3 bits (1401), Expect = 8.900e-152 Identity = 280/282 (99.29%), Postives = 281/282 (99.65%), Query Frame = 1
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D7T5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g002860 PE=4 SV=1) HSP 1 Score: 296.2 bits (757), Expect = 4.200e-77 Identity = 187/297 (62.96%), Postives = 211/297 (71.04%), Query Frame = 1
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Match: A0A068UKB7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027699001 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 4.700e-36 Identity = 118/267 (44.19%), Postives = 151/267 (56.55%), Query Frame = 1
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Match: A5ADW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g00280 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.600e-28 Identity = 105/281 (37.37%), Postives = 144/281 (51.25%), Query Frame = 1
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Match: V4U1X8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021650mg PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.100e-27 Identity = 101/283 (35.69%), Postives = 146/283 (51.59%), Query Frame = 1
BLAST of Spo01142.1 vs. ExPASy Swiss-Prot
Match: Y4095_ARATH (Uncharacterized protein At4g00950 OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 4.900e-18 Identity = 104/307 (33.88%), Postives = 141/307 (45.93%), Query Frame = 1
BLAST of Spo01142.1 vs. TAIR (Arabidopsis)
Match: AT4G00950.1 (Protein of unknown function (DUF688)) HSP 1 Score: 93.2 bits (230), Expect = 2.700e-19 Identity = 104/307 (33.88%), Postives = 141/307 (45.93%), Query Frame = 1
BLAST of Spo01142.1 vs. TAIR (Arabidopsis)
Match: AT5G53030.1 (unknown protein) HSP 1 Score: 57.0 bits (136), Expect = 2.200e-8 Identity = 78/262 (29.77%), Postives = 115/262 (43.89%), Query Frame = 1
BLAST of Spo01142.1 vs. TAIR (Arabidopsis)
Match: AT4G27810.1 (unknown protein) HSP 1 Score: 51.2 bits (121), Expect = 1.200e-6 Identity = 50/160 (31.25%), Postives = 70/160 (43.75%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01142.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01142.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01142.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo01142.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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