Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATTCACACACCAATAAGAGACTAATCAGTACCAATATGAGTAACCTGTGTTCATTAGACTTCCTCGATTATGGTGATTGGTGACCACATAACGAAATGTTCAGCCGGTAAAATAACCAGTCATCATCCTCACCAAAACTAGACTAGATAGACGATAGTGGAGGAAATAAGAAATGGGTACGAAACAGTTACAACTGCCACTAACATCATCATCATCATCATCATCTTCTTCATCTTTTACTGGACCGTCTTCCCTTTTATCTCACCGCTACCATTGTTGTAGCACCACCACCACCTCACTGCCTTTCAATCGCACCACCACCAACAACCACATTGCTAACACTACTCTCTCTCTTTCCCTCAACCATGTCAACCGCCGTCTCCGCCGTCGTTCAATTCAACTCGCCCGTTTTGGTTTGGATGACTCAGTAGCTTGGACTCCTGCTACCGCCACCGCTTTCGAGGAAGAGGAAGACGATGTAGAACCAGAACCTACTCCGGGGATTCTCGAGTACATTGGCCAAATTAATAGAGTAATCTATCCCCTCTGTTCTTAATTTGTCTTATCCTTTGCGTTTTTGAATTTCAACTTTATAATTTCTGTTTAGGTTTTGGAGCTGCTGAAGAAGAACAAGGATATTCTTTTTGGGGAGGTACACAATTTTGGTTCACTACTCTTAATTTCTAGGTTTTTAGTTCACTTTTTACCAATAAATTTTCTATTGTTAAGTTTTTCATTTGGCTAATTTTAGAGGCAGAATGTGGAATGTGGAATTTGGAATTTGGAATTGAAGTTGTCTTTCATTTAGAAAGGAGTAAATTGCAGTGGCACCATGAAGAATTTTTTTTCTTTTTCTGATGTATGATTTGCCTAGCATTTTTTGTGTCGAATTAGTTCTATTAGTAAGCGTTTGTGATTTGAGATTGATTCTATGGATATCAATGTAGCCCAATTATTGTATCAAGAGCCTTGGACCATGACATTCATCACAGTCTCGGATGAACGATAGTCCAGAAATTATGTTATGTTAAAATATATTTCCTCCGTTTTTTAGTTGACACAATTATTTTAGCACGTTTGCCAATGCATTATTTCAATTATCGGGTAAACATTATGGAAATTTTGCTAAAATCCACCTTTTACTATTAGCATAGGCAAGTCAAAATAGAAAAACTGGCCTTGGGTATGCCCGTTTCTTCGAGAGAAATTCACGTTGAGTAATATCTATTTTGTCGAACCACCCCATAAAATCATTGTTCTAAGTTGGAATCACCACGGAACCATGTCATGGATTCGGTCCAATAGTTATTTATTTATTTTTTGATAAGGAAAAGAAATCAGGCTAGTCCCTTAGAAATGGCCAACCTAATTCATCATTTCGAATGATAAGGGAGAGGGAAGGGTCAAACGAAGAGAACCATAGCGATAAATTAAAGTACACCTTTTCGCCGCCATAAAATCCATTGTTTGATTAGCTACCCGGTAACAGTGAGTGATCTCGAAACATAGTCGAAGTTTGATAAGTCCTTTATTATTTATATGTGAAAAAACCCTTGTTGTTTCCTTCCTTGGGGTATTTTCTCCCTCTTTAACTTTGAAAGTGTAATTGTACAATTAGAAAACAAACAACCCAATTTACGCCAATCGTTATTTAATACTGACTCAAGGAACCTTATTGTCAATAGCCAGAAATTCTTTTCCCTATTGCTGTTTTAGGACAGGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCAGTTCTTTTAACCTGTTGTTTAGTTTGGAGAGCTTCGTTAAGTGACTCAATTTTTTCACTGACGCTCTCTTGAATGGCGGATCATTCCTTTGAAGTAGATTTGAGTATCGTCCTTTATAGTATAAGTTAGTATGTGTTGTGGGTGTATAGTGTACTCCCTCCCAACCCCTATGCTCAATTATCAGTTTTACTTGGCCCTTTTCTTTTTTCTTATTCTGGGTTCAGAGGAGCTAATTTTGCCCCTCTTTGTGTTTCTTCCAGAAATGGCAGAGGAGATTTAACTGTACTCCGCTTTTGGATTTCATCAATTTAACTTGTAAGTTGGAACCTTTTATTTAGGCTTCATTACACTCTGTTCACATCATTTATGAAGAGATTCTTTTCTTCTGTTTCAATTTTTAAGGGGAGACAGGTAGAAGTGAAGAGAACAGTGGTGGAAAAGGAATAGAGTTGAATAATCGAAGGCATATCCTATTGTCATCAGTTGGAATTAGTGCCGGCTACCTTCTGAACGCTGCAGCTCCTGCTGTGGCTGCTTCTTCACGCTCTGGATTTGCAGACAGTTAA ATTCACACACCAATAAGAGACTAATCAGTACCAATATGAGTAACCTGTGTTCATTAGACTTCCTCGATTATGGTGATTGGTGACCACATAACGAAATGTTCAGCCGGTAAAATAACCAGTCATCATCCTCACCAAAACTAGACTAGATAGACGATAGTGGAGGAAATAAGAAATGGGTACGAAACAGTTACAACTGCCACTAACATCATCATCATCATCATCATCTTCTTCATCTTTTACTGGACCGTCTTCCCTTTTATCTCACCGCTACCATTGTTGTAGCACCACCACCACCTCACTGCCTTTCAATCGCACCACCACCAACAACCACATTGCTAACACTACTCTCTCTCTTTCCCTCAACCATGTCAACCGCCGTCTCCGCCGTCGTTCAATTCAACTCGCCCGTTTTGGTTTGGATGACTCAGTAGCTTGGACTCCTGCTACCGCCACCGCTTTCGAGGAAGAGGAAGACGATGTAGAACCAGAACCTACTCCGGGGATTCTCGAGTACATTGGCCAAATTAATAGAGTTTTGGAGCTGCTGAAGAAGAACAAGGATATTCTTTTTGGGGAGAAATGGCAGAGGAGATTTAACTGTACTCCGCTTTTGGATTTCATCAATTTAACTTGGGAGACAGGTAGAAGTGAAGAGAACAGTGGTGGAAAAGGAATAGAGTTGAATAATCGAAGGCATATCCTATTGTCATCAGTTGGAATTAGTGCCGGCTACCTTCTGAACGCTGCAGCTCCTGCTGTGGCTGCTTCTTCACGCTCTGGATTTGCAGACAGTTAA ATGGGTACGAAACAGTTACAACTGCCACTAACATCATCATCATCATCATCATCTTCTTCATCTTTTACTGGACCGTCTTCCCTTTTATCTCACCGCTACCATTGTTGTAGCACCACCACCACCTCACTGCCTTTCAATCGCACCACCACCAACAACCACATTGCTAACACTACTCTCTCTCTTTCCCTCAACCATGTCAACCGCCGTCTCCGCCGTCGTTCAATTCAACTCGCCCGTTTTGGTTTGGATGACTCAGTAGCTTGGACTCCTGCTACCGCCACCGCTTTCGAGGAAGAGGAAGACGATGTAGAACCAGAACCTACTCCGGGGATTCTCGAGTACATTGGCCAAATTAATAGAGTTTTGGAGCTGCTGAAGAAGAACAAGGATATTCTTTTTGGGGAGAAATGGCAGAGGAGATTTAACTGTACTCCGCTTTTGGATTTCATCAATTTAACTTGGGAGACAGGTAGAAGTGAAGAGAACAGTGGTGGAAAAGGAATAGAGTTGAATAATCGAAGGCATATCCTATTGTCATCAGTTGGAATTAGTGCCGGCTACCTTCTGAACGCTGCAGCTCCTGCTGTGGCTGCTTCTTCACGCTCTGGATTTGCAGACAGTTAA MGTKQLQLPLTSSSSSSSSSSFTGPSSLLSHRYHCCSTTTTSLPFNRTTTNNHIANTTLSLSLNHVNRRLRRRSIQLARFGLDDSVAWTPATATAFEEEEDDVEPEPTPGILEYIGQINRVLELLKKNKDILFGEKWQRRFNCTPLLDFINLTWETGRSEENSGGKGIELNNRRHILLSSVGISAGYLLNAAAPAVAASSRSGFADS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00905.1 vs. NCBI nr
Match: gi|902204920|gb|KNA15021.1| (hypothetical protein SOVF_102100 isoform B [Spinacia oleracea]) HSP 1 Score: 395.2 bits (1014), Expect = 7.000e-107 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo00905.1 vs. NCBI nr
Match: gi|902204921|gb|KNA15022.1| (hypothetical protein SOVF_102100 isoform C, partial [Spinacia oleracea]) HSP 1 Score: 395.2 bits (1014), Expect = 7.000e-107 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo00905.1 vs. NCBI nr
Match: gi|902204919|gb|KNA15020.1| (hypothetical protein SOVF_102100 isoform A [Spinacia oleracea]) HSP 1 Score: 378.6 bits (971), Expect = 6.800e-102 Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1
BLAST of Spo00905.1 vs. NCBI nr
Match: gi|902197535|gb|KNA13458.1| (hypothetical protein SOVF_116430 isoform B [Spinacia oleracea]) HSP 1 Score: 179.5 bits (454), Expect = 6.100e-42 Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 1
BLAST of Spo00905.1 vs. NCBI nr
Match: gi|902197534|gb|KNA13457.1| (hypothetical protein SOVF_116430 isoform A [Spinacia oleracea]) HSP 1 Score: 179.5 bits (454), Expect = 6.100e-42 Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 1
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8C0_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_102100 PE=4 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 4.900e-107 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R689_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102100 PE=4 SV=1) HSP 1 Score: 395.2 bits (1014), Expect = 4.900e-107 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R688_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_102100 PE=4 SV=1) HSP 1 Score: 378.6 bits (971), Expect = 4.700e-102 Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3Q5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116430 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.200e-42 Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 1
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1R9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116430 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.200e-42 Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = 1
BLAST of Spo00905.1 vs. ExPASy Swiss-Prot
Match: Y3IP1_TOBAC (Ycf3-interacting protein 1, chloroplastic OS=Nicotiana tabacum PE=1 SV=2) HSP 1 Score: 61.2 bits (147), Expect = 1.500e-8 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00905.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00905.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00905.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo00905.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
RNA-Seq Expression
Co-expression
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