Spo00825 (gene)

Overview
NameSpo00825
Typegene
OrganismSpinacia oleracea (Spinach)
Description(Expressed protein) (MRNA, , clone: RAFL21-78-F02)
Locationchr4 : 29396512 .. 29397369 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGACAGAGTGATTAATAATATTCAAAGAACATGTATAATGGTATGCATTTCCTAATTTAAGTCGGTTGGAAATTATACGCATCTCTTACCGAATACTTTCCTTTAGTCAATCACGTCACCTAATAGAATAAGAAGTTCAATTACCCTTTTTCAGTGTTTATCATCATAAACGCAGCCACACCGTTATTATAATTATAATTTATAACCACATCACCCATTCATCTCCCAACAAACATACCAGCCCTACTCCATTCACAGCAACAGAGACAGTCCAATCTTATTCAATTTCAAAGGATTGAAAAATCCTACCCTTAAAACCAACATTATCAATTCATCATGTGTTGTGGAGACGGTGATTGCAGGCCATTGGGCTTCCTATTGGGCCTTCCTTTCGCCTTCTTATGCCTCCTTATCTCAATTGTCGGCATCATCATCTGGATCGTCGGGTAATTTCATTGATTACACCACTAATTCTTGTCAGTTTTGATTAATTTTCAATTTGATTAATAATTGAATTATTTTGTATTTTGTATTTTGTATTTTATATTTGGACAGATTGACGTTGAGTTGCATATGCCCGTGCTGTTTGTGTGTGACCGTGTTAGTGGAATTGGCACTCGAATTGATCAAAGCACCTATTCATGTGATGGAGTGGTTCACTTCTAAGATCCCTTGTTAATTTATTTTTAATTGTATTTCTTGTAAATTTCAATAATTATATTTGTGAGGTTTTGTGTATTAGTTTTAAGATCCCTTGTTAAATTCTTGATCTATAGATGATTCTTTACTTTTATACTTGGTATTTGTTAATTGTTTGGGAATATAATCGGAATAACTAGTGTTGTGTTTTTAT

mRNA sequence

ATGGGAGACAGAGTGATTAATAATATTCAAAGAACATGTATAATGCCCTACTCCATTCACAGCAACAGAGACAGTCCAATCTTATTCAATTTCAAAGGATTGAAAAATCCTACCCTTAAAACCAACATTATCAATTCATCATGTGTTGTGGAGACGGTGATTGCAGGCCATTGGGCTTCCTATTGGGCCTTCCTTTCGCCTTCTTATGCCTCCTTATCTCAATTGTCGGCATCATCATCTGGATCGTCGGGTAATTTCATTGATTACACCACTAATTCTTGTCAATTGACGTTGAGTTGCATATGCCCGTGCTGTTTGTGTGTGACCGTGTTAGTGGAATTGGCACTCGAATTGATCAAAGCACCTATTCATGTGATGGAGTGGTTCACTTCTAAGATCCCTTGTTAATTTATTTTTAATTGTATTTCTTGTAAATTTCAATAATTATATTTGTGAGGTTTTGTGTATTAGTTTTAAGATCCCTTGTTAAATTCTTGATCTATAGATGATTCTTTACTTTTATACTTGGTATTTGTTAATTGTTTGGGAATATAATCGGAATAACTAGTGTTGTGTTTTTAT

Coding sequence (CDS)

ATGGGAGACAGAGTGATTAATAATATTCAAAGAACATGTATAATGCCCTACTCCATTCACAGCAACAGAGACAGTCCAATCTTATTCAATTTCAAAGGATTGAAAAATCCTACCCTTAAAACCAACATTATCAATTCATCATGTGTTGTGGAGACGGTGATTGCAGGCCATTGGGCTTCCTATTGGGCCTTCCTTTCGCCTTCTTATGCCTCCTTATCTCAATTGTCGGCATCATCATCTGGATCGTCGGGTAATTTCATTGATTACACCACTAATTCTTGTCAATTGACGTTGAGTTGCATATGCCCGTGCTGTTTGTGTGTGACCGTGTTAGTGGAATTGGCACTCGAATTGATCAAAGCACCTATTCATGTGATGGAGTGGTTCACTTCTAAGATCCCTTGTTAA

Protein sequence

MGDRVINNIQRTCIMPYSIHSNRDSPILFNFKGLKNPTLKTNIINSSCVVETVIAGHWASYWAFLSPSYASLSQLSASSSGSSGNFIDYTTNSCQLTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00825.1Spo00825.1mRNA


Homology
[Close]
BLAST of Spo00825.1 vs. NCBI nr
Match: gi|902229485|gb|KNA21522.1| (hypothetical protein SOVF_041900 [Spinacia oleracea])

HSP 1 Score: 85.1 bits (209), Expect = 1.000e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. NCBI nr
Match: gi|731365149|ref|XP_010694368.1| (PREDICTED: uncharacterized protein LOC104907174 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 85.1 bits (209), Expect = 1.000e-13
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. NCBI nr
Match: gi|565397028|ref|XP_006364104.1| (PREDICTED: uncharacterized protein LOC102587032 [Solanum tuberosum])

HSP 1 Score: 82.0 bits (201), Expect = 8.600e-13
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFT +IPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTDQIPC 77
[Close]
BLAST of Spo00825.1 vs. NCBI nr
Match: gi|743799970|ref|XP_010925691.1| (PREDICTED: uncharacterized protein LOC105048173 [Elaeis guineensis])

HSP 1 Score: 80.9 bits (198), Expect = 1.900e-12
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           L LSCICPCCLCVT+LVELA+ELIKAP+HVMEWFTSKIPC
Sbjct: 37  LLLSCICPCCLCVTILVELAIELIKAPLHVMEWFTSKIPC 76
[Close]
BLAST of Spo00825.1 vs. NCBI nr
Match: gi|388497522|gb|AFK36827.1| (unknown [Medicago truncatula])

HSP 1 Score: 80.9 bits (198), Expect = 1.900e-12
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTL+CICPCCLC+TV+VELALEL+KAP+HVMEWFTSKIPC
Sbjct: 38  LTLTCICPCCLCLTVIVELALELVKAPLHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRS6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_041900 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.100e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BED6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092670 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.100e-14
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GF13_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.000e-13
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFT +IPC
Sbjct: 38  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTDQIPC 77
[Close]
BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Match: I3S985_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.300e-12
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LTL+CICPCCLC+TV+VELALEL+KAP+HVMEWFTSKIPC
Sbjct: 38  LTLTCICPCCLCLTVIVELALELVKAPLHVMEWFTSKIPC 77
[Close]
BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Match: B9IQQ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12020g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.300e-12
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           L LSC+CPCCLCVTV+VELALELIKAPIHVMEWFTS+IPC
Sbjct: 38  LLLSCVCPCCLCVTVIVELALELIKAPIHVMEWFTSQIPC 77
[Close]
BLAST of Spo00825.1 vs. TAIR (Arabidopsis)
Match: AT2G31090.1 (unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.700e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 

		  

Query: 96  LTLSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           L LSCICPCCLCVTVLVE+A+ LIKAPIHVMEWF SKIPC
Sbjct: 36  LLLSCICPCCLCVTVLVEIAIGLIKAPIHVMEWFMSKIPC 75
[Close]
BLAST of Spo00825.1 vs. TAIR (Arabidopsis)
Match: AT2G20562.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 5.200e-8
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 1 

		  

Query: 98  LSCICPCCLCVTVLVELALELIKAPIHVMEWFTSKIPC 136
           LSC+CPCC C   L   A++LIK PI V+ WFT  IPC
Sbjct: 36  LSCLCPCCFCFAALANFAVDLIKLPIKVLRWFTHSIPC 73
The following BLAST results are available for this feature:
BLAST of Spo00825.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229485|gb|KNA21522.1|1.0e-13100.hypothetical protein SOVF_0419... [more]
gi|731365149|ref|XP_010694368.1|1.0e-13100.PREDICTED: uncharacterized pro... [more]
gi|565397028|ref|XP_006364104.1|8.6e-1395.0PREDICTED: uncharacterized pro... [more]
gi|743799970|ref|XP_010925691.1|1.9e-1290.0PREDICTED: uncharacterized pro... [more]
gi|388497522|gb|AFK36827.1|1.9e-1287.5unknown [Medicago truncatula][more]
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BLAST of Spo00825.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RRS6_SPIOL7.1e-14100.Uncharacterized protein OS=Spi... [more]
A0A0J8BED6_BETVU7.1e-14100.Uncharacterized protein OS=Bet... [more]
A0A0V0GF13_SOLCH6.0e-1395.0Putative ovule protein OS=Sola... [more]
I3S985_MEDTR1.3e-1287.5Uncharacterized protein OS=Med... [more]
B9IQQ0_POPTR2.3e-1290.0Uncharacterized protein OS=Pop... [more]
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BLAST of Spo00825.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00825.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G31090.11.7e-1487.5unknown protein[more]
AT2G20562.15.2e-857.8unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33834FAMILY NOT NAMEDcoord: 96..135
score: 1.3

RNA-Seq Expression