Spo00710 (gene)

Overview
NameSpo00710
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 38628361 .. 38629906 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATGCTTGTAAAATGCATAAACGAATGACTTTGGCACGATAACACCTTATCGGTGGTGTAAATAAGGTCTCAACAATCAAGGGGTGCCACGAAAAGAACCGACTACCCTTTTGGTGTTTAAGCATATGTATTTGGTTTGTTTTATAGTTTGTGTAATGGTCTATAAAGACCTCCTTACTTTGTTTAGTTTGTAGACTCTTTTCATTTATGCAAAATCAATCCTATGTCAAAAAAAAAAATATGATAATTTATTTTCTTACAATAAAAAATGACTTGATCGAGTTGGCCTACTAAAGAAAGGAAAAAAAAAAACATAAAACTAAAAGTTCCACACCAATGATCCAAAATGTGTAAGACAAATCCAATATCTCATTTATAAAATTTCCATACACCCCTTACAAATATTCCACAAAGGAAACTACACATACACCTCACTTCCACCACTCCCCCTTACAATAAAAAGACTAAACCACACAATTTCTACACCTTTCTTTTCTCTGCGAAGAAACACTCACCTCAAAATCCATGTTGGAGTTAACAGTAATTTCAGCTCAAGGACTCAAAAACTCCTCCCTCTTCACCCACCATCTTAAACCCTTCATCACCATCACCACCACCACTACCACCACCACCTTCCCTTCACCACCATCGCCGTCGTTGTCGCACGAGGGCGGCTCCACCAAGGGCTACCACAACTTCCATCATGTGTACTCAACAAGGGTAGATGATGAAGGAGGTTTTAACCCTACATGGGGTGATAAGTTCCATCTACCAATAGATCCTACATTCTTCACAAGTACTACTACTAACTACTCTTGTGTTTATCTCCAACTATACACAAAGCGGGCCTTATTGGGCCCTTTATTGATGGGCTGGATCCAGATAACTGCTTCTGATATATTTGATGGGCATTTTCCTCTTGGGTCAGCCCATCATTTGAGTTACCGGCTGAGGAAGAGAGACGGTTCAAGAGGGCATGGGGTTGTTAATGTTGTTTGTAAATTTGTAGGTGAAGTTCCGGTTATACGTCATCCTTGTTGGAGTCCAGGTGAAAGACGTTTGGCGGCTGTGGACACGTGTAAGACGGTGATTGGTACACCGGTGACGGCTTGGCCAATGAGAATGAAGGATAGAGATAAGATGGGTAATGTAACACGTACTAATGAGTAATGACTAATGACTACTCCGTAGTAGATAACTAGATAAGACAACGAGCAAGCATGTAATTGATTAACAACGCCACTTGACAAGGAAGGCTACGAAAATTTGTATATTACGGGTGTATCGTACGCTTATAATCGTTTGATTTGACATTTGTTTGATTTTAGCAAATTAAATTAAAGTTAACATACATATCATATTTTTAGTACTGTATGTATGTACTCTGTAGTACTTCCTCTGTTCTTATTTATATGATACAATTATTTAGTCACGTTTGCCAATGCACAATTTCGAATATTAATATTTACAATTATGGATAAGAAAAAATTATAAAAAGTTGATATTTAAAAAATATTTATTGAGACGAATCAAACAAGACCCCAC

mRNA sequence

TCATGCTTGTAAAATGCATAAACGAATGACTTTGGCACGATAACACCTTATCGGTGGTGTAAATAAGGTCTCAACAATCAAGGGGTGCCACGAAAAGAACCGACTACCCTTTTGGTGTTTAAGCATATGTATTTGGTTTGTTTTATAGTTTGTGTAATGGTCTATAAAGACCTCCTTACTTTGTTTAGTTTGTAGACTCTTTTCATTTATGCAAAATCAATCCTATGTCAAAAAAAAAAATATGATAATTTATTTTCTTACAATAAAAAATGACTTGATCGAGTTGGCCTACTAAAGAAAGGAAAAAAAAAAACATAAAACTAAAAGTTCCACACCAATGATCCAAAATGTGTAAGACAAATCCAATATCTCATTTATAAAATTTCCATACACCCCTTACAAATATTCCACAAAGGAAACTACACATACACCTCACTTCCACCACTCCCCCTTACAATAAAAAGACTAAACCACACAATTTCTACACCTTTCTTTTCTCTGCGAAGAAACACTCACCTCAAAATCCATGTTGGAGTTAACAGTAATTTCAGCTCAAGGACTCAAAAACTCCTCCCTCTTCACCCACCATCTTAAACCCTTCATCACCATCACCACCACCACTACCACCACCACCTTCCCTTCACCACCATCGCCGTCGTTGTCGCACGAGGGCGGCTCCACCAAGGGCTACCACAACTTCCATCATGTGTACTCAACAAGGGTAGATGATGAAGGAGGTTTTAACCCTACATGGGGTGATAAGTTCCATCTACCAATAGATCCTACATTCTTCACAAGTGAAGTTCCGGTTATACGTCATCCTTGTTGGAGTCCAGGTGAAAGACGTTTGGCGGCTGTGGACACGTGTAAGACGGTGATTGGTACACCGGTGACGGCTTGGCCAATGAGAATGAAGGATAGAGATAAGATGGGTAATGTAACACGTACTAATGAGTAATGACTAATGACTACTCCGTAGTAGATAACTAGATAAGACAACGAGCAAGCATGTAATTGATTAACAACGCCACTTGACAAGGAAGGCTACGAAAATTTGTATATTACGGGTGTATCGTACGCTTATAATCGTTTGATTTGACATTTGTTTGATTTTAGCAAATTAAATTAAAGTTAACATACATATCATATTTTTAGTACTGTATGTATGTACTCTGTAGTACTTCCTCTGTTCTTATTTATATGATACAATTATTTAGTCACGTTTGCCAATGCACAATTTCGAATATTAATATTTACAATTATGGATAAGAAAAAATTATAAAAAGTTGATATTTAAAAAATATTTATTGAGACGAATCAAACAAGACCCCAC

Coding sequence (CDS)

ATGTTGGAGTTAACAGTAATTTCAGCTCAAGGACTCAAAAACTCCTCCCTCTTCACCCACCATCTTAAACCCTTCATCACCATCACCACCACCACTACCACCACCACCTTCCCTTCACCACCATCGCCGTCGTTGTCGCACGAGGGCGGCTCCACCAAGGGCTACCACAACTTCCATCATGTGTACTCAACAAGGGTAGATGATGAAGGAGGTTTTAACCCTACATGGGGTGATAAGTTCCATCTACCAATAGATCCTACATTCTTCACAAGTGAAGTTCCGGTTATACGTCATCCTTGTTGGAGTCCAGGTGAAAGACGTTTGGCGGCTGTGGACACGTGTAAGACGGTGATTGGTACACCGGTGACGGCTTGGCCAATGAGAATGAAGGATAGAGATAAGATGGGTAATGTAACACGTACTAATGAGTAA

Protein sequence

MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHHVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTSEVPVIRHPCWSPGERRLAAVDTCKTVIGTPVTAWPMRMKDRDKMGNVTRTNE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00710.1Spo00710.1mRNA


Homology
BLAST of Spo00710.1 vs. NCBI nr
Match: gi|902131574|gb|KNA04286.1| (hypothetical protein SOVF_201150 [Spinacia oleracea])

HSP 1 Score: 191.4 bits (485), Expect = 1.100e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

		  

Query: 1  MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH 60
          MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH
Sbjct: 1  MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH 60

Query: 61 VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 92
          VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS
Sbjct: 61 VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 91

BLAST of Spo00710.1 vs. NCBI nr
Match: gi|870860829|gb|KMT12137.1| (hypothetical protein BVRB_5g100890 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.0 bits (271), Expect = 7.000e-21
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 1

		  

Query: 1  MLELTVISAQGLKNS----SLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYH 60
          MLE+TVISAQGLKNS    SLF+HHLKPFITITT   ++   S  S S S      KGY+
Sbjct: 1  MLEITVISAQGLKNSSSSFSLFSHHLKPFITITTLNPSS---SSSSSSSSSSCEYIKGYN 60

Query: 61 NFHHVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 92
          N  HVYST VDD+GG NPTWGDKF LP+DPTFFTS
Sbjct: 61 NC-HVYSTSVDDQGGNNPTWGDKFLLPLDPTFFTS 91

BLAST of Spo00710.1 vs. NCBI nr
Match: gi|694386499|ref|XP_009369028.1| (PREDICTED: uncharacterized protein LOC103958488 [Pyrus x bretschneideri])

HSP 1 Score: 92.0 bits (227), Expect = 8.800e-16
Identity = 50/97 (51.55%), Postives = 62/97 (63.92%), Query Frame = 1

		  

Query: 2  LELTVISAQGLKNSS--LFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
          +E+TV+SAQGLK +S  LF++ ++PFIT+TT   T   P  P          T G H FH
Sbjct: 13 MEITVLSAQGLKTTSPSLFSNKIRPFITLTTLPGTIAPPCTPK---------TNGDHTFH 72

Query: 62 HVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTSEVPVI 97
            Y TRVDD+GG NPTWGDKFH+PID TFF +    I
Sbjct: 73 -AYKTRVDDQGGVNPTWGDKFHVPIDTTFFNNRCSCI 99

BLAST of Spo00710.1 vs. NCBI nr
Match: gi|703160516|ref|XP_010112552.1| (hypothetical protein L484_010557 [Morus notabilis])

HSP 1 Score: 91.3 bits (225), Expect = 1.500e-15
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = 1

		  

Query: 2   LELTVISAQGLKNSS--LFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
           +E+TV+SA+GLK SS  LF H ++PFITI+T         PP P  S   G  +      
Sbjct: 1   MEITVVSAEGLKTSSSALFAHRIRPFITISTV--------PPDPYFSTTNGDKRC----- 60

Query: 62  HVYSTRVDDEGGFNPTWGDKFHLPIDPT-FFTSEVPVIRHPCWSP----GERRLAAVDTC 121
           HVY TRVDD+GG NPTWGDKF LPID T FFT+    I    ++     G+  L +    
Sbjct: 61  HVYKTRVDDQGGTNPTWGDKFRLPIDGTAFFTNRYSGININLYTKRLFLGQSHLGSCHIP 120

Query: 122 KTVIGTPVTAWPMRMKDRDKMGNVTR 141
              IG P +   +  + R + G+ TR
Sbjct: 121 AHDIGLPPSLRHLSYRLRARDGSRTR 133

BLAST of Spo00710.1 vs. NCBI nr
Match: gi|658040027|ref|XP_008355606.1| (PREDICTED: BON1-associated protein 1-like [Malus domestica])

HSP 1 Score: 89.4 bits (220), Expect = 5.700e-15
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1

		  

Query: 2  LELTVISAQGLKNSS--LFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
          +E+TV+SAQGLK SS  LF++ ++PF+TITT  +T   P  P          T G    H
Sbjct: 13 MEITVLSAQGLKTSSPSLFSNKIRPFVTITTLPSTIAQPCTPK---------TNGDRTLH 72

Query: 62 HVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTSEVPVI 97
           VY TRVDD+GG +PTWGDKFH+PID TFF +    I
Sbjct: 73 -VYKTRVDDQGGVSPTWGDKFHVPIDTTFFNNRYSCI 99

BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCN1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_201150 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.400e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1

		  

Query: 1  MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH 60
          MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH
Sbjct: 1  MLELTVISAQGLKNSSLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFHH 60

Query: 61 VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 92
          VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS
Sbjct: 61 VYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 91

BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CF29_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g100890 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.800e-21
Identity = 63/95 (66.32%), Postives = 70/95 (73.68%), Query Frame = 1

		  

Query: 1  MLELTVISAQGLKNS----SLFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYH 60
          MLE+TVISAQGLKNS    SLF+HHLKPFITITT   ++   S  S S S      KGY+
Sbjct: 1  MLEITVISAQGLKNSSSSFSLFSHHLKPFITITTLNPSS---SSSSSSSSSSCEYIKGYN 60

Query: 61 NFHHVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 92
          N  HVYST VDD+GG NPTWGDKF LP+DPTFFTS
Sbjct: 61 NC-HVYSTSVDDQGGNNPTWGDKFLLPLDPTFFTS 91

BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Match: W9SLC7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010557 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.000e-15
Identity = 60/146 (41.10%), Postives = 79/146 (54.11%), Query Frame = 1

		  

Query: 2   LELTVISAQGLKNSS--LFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
           +E+TV+SA+GLK SS  LF H ++PFITI+T         PP P  S   G  +      
Sbjct: 1   MEITVVSAEGLKTSSSALFAHRIRPFITISTV--------PPDPYFSTTNGDKRC----- 60

Query: 62  HVYSTRVDDEGGFNPTWGDKFHLPIDPT-FFTSEVPVIRHPCWSP----GERRLAAVDTC 121
           HVY TRVDD+GG NPTWGDKF LPID T FFT+    I    ++     G+  L +    
Sbjct: 61  HVYKTRVDDQGGTNPTWGDKFRLPIDGTAFFTNRYSGININLYTKRLFLGQSHLGSCHIP 120

Query: 122 KTVIGTPVTAWPMRMKDRDKMGNVTR 141
              IG P +   +  + R + G+ TR
Sbjct: 121 AHDIGLPPSLRHLSYRLRARDGSRTR 133

BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Match: A0A067K105_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20640 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-14
Identity = 49/92 (53.26%), Postives = 60/92 (65.22%), Query Frame = 1

		  

Query: 2  LELTVISAQGLKNSSL--FTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
          +E+TVISAQGLK+ S   F+H L+PFITITT      +PS P        G+ K      
Sbjct: 1  MEITVISAQGLKSKSSGPFSHRLRPFITITT------YPSTPF------NGNKKC----- 60

Query: 62 HVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTS 92
          HVYSTR+DD+GG NPTWGDKFH+PID  F  +
Sbjct: 61 HVYSTRIDDQGGVNPTWGDKFHMPIDTAFLAN 75

BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QLP7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G160700 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.700e-14
Identity = 60/147 (40.82%), Postives = 76/147 (51.70%), Query Frame = 1

		  

Query: 2   LELTVISAQGLKNSS--LFTHHLKPFITITTTTTTTTFPSPPSPSLSHEGGSTKGYHNFH 61
           LE+TV+SAQGLKN+S  LFTH L+PFITITT      FP P       E    K    F 
Sbjct: 11  LEMTVVSAQGLKNTSSFLFTHRLRPFITITT------FPPPL------EAADLKSCRGFQ 70

Query: 62  HVYSTRVDDEGGFNPTWGDKFHLPIDPTFFTSEVPVIRHPCWS----PGERRLAAVDTCK 121
               TRVDD+GG NPTWGDKF +PI  TFF +    I    ++     G+ +L       
Sbjct: 71  ----TRVDDQGGVNPTWGDKFLVPIHHTFFANRYSCIYLQLFTKRLISGKAQLGWCQIPA 130

Query: 122 TVIGTPVTAWPMRMKDRDKMGNVTRTN 143
             IG P      ++  R +  + TRT+
Sbjct: 131 ADIGLPPVGSVRQLSYRLREADGTRTH 141

The following BLAST results are available for this feature:
BLAST of Spo00710.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902131574|gb|KNA04286.1|1.1e-45100.hypothetical protein SOVF_2011... [more]
gi|870860829|gb|KMT12137.1|7.0e-2166.3hypothetical protein BVRB_5g10... [more]
gi|694386499|ref|XP_009369028.1|8.8e-1651.5PREDICTED: uncharacterized pro... [more]
gi|703160516|ref|XP_010112552.1|1.5e-1541.1hypothetical protein L484_0105... [more]
gi|658040027|ref|XP_008355606.1|5.7e-1550.5PREDICTED: BON1-associated pro... [more]
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BLAST of Spo00710.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QCN1_SPIOL7.4e-46100.Uncharacterized protein OS=Spi... [more]
A0A0J8CF29_BETVU4.8e-2166.3Uncharacterized protein OS=Bet... [more]
W9SLC7_9ROSA1.0e-1541.1Uncharacterized protein OS=Mor... [more]
A0A067K105_JATCU1.5e-1453.2Uncharacterized protein OS=Jat... [more]
A0A0D2QLP7_GOSRA5.7e-1440.8Uncharacterized protein OS=Gos... [more]
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BLAST of Spo00710.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00710.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainGENE3D2.60.40.150coord: 2..86
score: 6.
IPR000008C2 domainPFAMPF00168C2coord: 2..86
score: 0.
IPR000008C2 domainunknownSSF49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 2..88
score: 3.2
NoneNo IPR availablePANTHERPTHR32246FAMILY NOT NAMEDcoord: 1..31
score: 4.2E-21coord: 57..89
score: 4.2
NoneNo IPR availablePANTHERPTHR32246:SF26SUBFAMILY NOT NAMEDcoord: 1..31
score: 4.2E-21coord: 57..89
score: 4.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
RNA-Seq Expression
   



Co-expression