Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGATGTTGTTTTGATTAATGACCCTAAAAAAAAATTGAACTTATAATTTATGGGGTTTTCTCATTAATCAGTTTGATTGAATATCCTTTTTCTTCTGTAATAATTTCAGGAGCCAGAAATGAAGCTTATTCGGGTAGCAATACGATCTCTAAGTGATGGATTCTATCATCATCATCATCAATTTCATCGGTCCATCACTGCCCGAACCCTTTCCACCGATTTAAATCATGGTAATTTTTATTTTGTGATGTTTTATCTTTATTTGTTTATTTATTTCGGCATTTTTATTACGGAGTACTTTATTTCCCAGTTCCTATTGAAAAATTCTTGCTGTAAGTCTATAAATTATTGCAGGGAAGTTGGAATTTAGGTTGGTATTGTACTATGATAGAGAATTGATATGGAATCACAGTTTGTGATGATTGTAGATCATATTAGTTTTGCATGTATTCAAGGAACAGATGAATAGTGAGATAGTCGAAATTCTAAGTTGAGAACATGACAGTTGATTTTTTTTTTTTTAACTAACTAATCTAGTACTTCGTAGATGTTACATTAGAGTTTTAAGGCCATTCTGGCGGGTTTTGTAGATTGTGGAAAATTGCATTCTGGAATTGCACGAGTTAATAGTATTTCAGTTTAGTGTAAACTGTAAAGAGATTGCTTACATAGTTACATGTTTACCTTTTATGTAGTTCATAGTAGTATATTGATATTGGGTTTTACCTATTCTTCTGACGTTGTACATACAATGTAAGTTTGAGAGGCCTTATCTTCCATGTTGTAATGCTTTTGGATTGCCCTGAACTTTGTAATAGGTCAAGGGAATGATGAGAACAAGGATACCAATTCATCTGAGTCCAATGTTGTGCGTCGCATTTTTGGTGGGATCTCTGAGGATAATGCCTTCATTCAGAATCTTGACAGTATTGAGAAGGCTCGGTTTGGAATGGGGACGGGTTCTACTGAATTCGGAGGTGATTACAGTACGTTGCTTGATGGGATGGAGAAGAAACTGAATGATGCAGCTAAATACTTTGAATTCAATCCGGATGAGATTAACCAAGAAGATTATACCTTTAGAACAGACATGAATTTTAAGCCTGGTGTGACATATAACCCCGAGGTATGTATCTGAATGTACGGCAGTTAAGGTGTTAAGCTATCTGCTGGTTATTGATTCTATCAAACGTGTCATGCATACCTCCAGAAATTTAAAACTTCATGCTACTTAGCTCATTTATCTTCCTTAGATCTGTACTTTATCGTTGCTTAAAACACACCTTAGAACCTGTTTTGGATACTTAACACTTCATTTTGGACCAAAGTGTACAAAAATTTGATGAATAGCCGAATTTGAAACTTGGACAAGTACCCATTTTTGCCCTTCATCTTGAGTTTTGACTGCCTGCTTAAAACAGTTTTTGTCTTTGTGCTATTTGTTTTGGCGTACAAACTAAATTTATATCTTTGTGAATTTGCTGTGATATTCTTCACTGTAGGATCTTGATCTTAGAAAACCAGGAGTTTGGAAACCTAGCAAACGGCCTGAGTTTCAAGTAACTACAGAGGAGGTTCTAAGGCAAGCAGATTTCCGGGTAAGCATGGATGATCTTCAGTATATTCTTTTGTTTGTTTCGAGTAATGGAATAAGTATTTCCTACTGGTTAAACCTGTCTCTTCAAATCTTGAATAGAACTGGTGCTCAAATCAATTTATATTGTGCAGAATGTGAGATTCCTTGCGAACTTTTTGACTGATGCTGGAATACTCAACAAGAGGAGCAAGGTAAACACATATCATCTCTATCTTGGCTGAAATATTTTCTCCCCTGGAATGTGAATTCTGAACACTAGTATACCTTAATCTACTATGAAGACTGGAATTAGTGCGAAAGCCCAAAGGAAAGTTGCAAGGGAGATCAAGACAGCCCGTGCTTTTGGATTGTTGCCTTTCACAACAATGGGGACAAAACAATTTGCATTTGGGCGAACGATGGAGGATCTTGATGAGGATTTTCGGTTGGAAGAGGAGTATGACACCCGAGCTGCTGACTTGGTTCAGGATCCTGTTGAATGATAGCTGCTCGCCTATGATAACTGTTAAATTTCAGAGTATTTAAGTCAGCACATGACCCCAATTCAACAAGCTTGACGGTGTGTAGTCTTTTGTATTCAGGCAAGCTAGTGAAATTATATGGCCGTTATGATGCATCATTACTTGCTTTTCGTTTTGATTTCTCCATTATGGATTGCTTGGTGGGTTACTTGTGGTTCTAGATGTCTGTAGAATATTTATTCACATCGTCTGATAATGAAGATGAGATGCAGAACTATGTCATTAAACTTGCTCTTGTTATACAAGTTCAATGATCTATACTATTTCTTTCTTCTGCTACCTCTGCCTTCTTTTGTTATGATCTTCATTTTGCTTTAGTTTCTTGGTATTGCTGTTTATATTTGTAGCACTCATCTTTAAGTCATCTAATGAAATTAAATCACCCACATTTCCATTTGTATTAGCACTCATTTGTTGTTGCCAAATATTGGCAGTTTACTAGTCAATGCCTATTATTGCCTTGGGCTGGTTAGATAGGGAAATTTTAGTAGCTGTCTCCCGCATCCT ATGGGAGATGAGCCAGAAATGAAGCTTATTCGGGTAGCAATACGATCTCTAAGTGATGGATTCTATCATCATCATCATCAATTTCATCGGTCCATCACTGCCCGAACCCTTTCCACCGATTTAAATCATGGTCAAGGGAATGATGAGAACAAGGATACCAATTCATCTGAGTCCAATGTTGTGCGTCGCATTTTTGGTGGGATCTCTGAGGATAATGCCTTCATTCAGAATCTTGACAGTATTGAGAAGGCTCGGTTTGGAATGGGGACGGGTTCTACTGAATTCGGAGGTGATTACAGTACGTTGCTTGATGGGATGGAGAAGAAACTGAATGATGCAGCTAAATACTTTGAATTCAATCCGGATGAGATTAACCAAGAAGATTATACCTTTAGAACAGACATGAATTTTAAGCCTGGTGTGACATATAACCCCGAGGATCTTGATCTTAGAAAACCAGGAGTTTGGAAACCTAGCAAACGGCCTGAGTTTCAAGTAACTACAGAGGAGGTTCTAAGGCAAGCAGATTTCCGGAATGTGAGATTCCTTGCGAACTTTTTGACTGATGCTGGAATACTCAACAAGAGGAGCAAGACTGGAATTAGTGCGAAAGCCCAAAGGAAAGTTGCAAGGGAGATCAAGACAGCCCGTGCTTTTGGATTGTTGCCTTTCACAACAATGGGGACAAAACAATTTGCATTTGGGCGAACGATGGAGGATCTTGATGAGGATTTTCGGTTGGAAGAGGAGTATGACACCCGAGCTGCTGACTTGGTTCAGGATCCTGTTGAATGATAGCTGCTCGCCTATGATAACTGTTAAATTTCAGAGTATTTAAGTCAGCACATGACCCCAATTCAACAAGCTTGACGGTGTGTAGTCTTTTGTATTCAGGCAAGCTAGTGAAATTATATGGCCGTTATGATGCATCATTACTTGCTTTTCGTTTTGATTTCTCCATTATGGATTGCTTGGTGGGTTACTTGTGGTTCTAGATGTCTGTAGAATATTTATTCACATCGTCTGATAATGAAGATGAGATGCAGAACTATGTCATTAAACTTGCTCTTGTTATACAAGTTCAATGATCTATACTATTTCTTTCTTCTGCTACCTCTGCCTTCTTTTGTTATGATCTTCATTTTGCTTTAGTTTCTTGGTATTGCTGTTTATATTTGTAGCACTCATCTTTAAGTCATCTAATGAAATTAAATCACCCACATTTCCATTTGTATTAGCACTCATTTGTTGTTGCCAAATATTGGCAGTTTACTAGTCAATGCCTATTATTGCCTTGGGCTGGTTAGATAGGGAAATTTTAGTAGCTGTCTCCCGCATCCT ATGGGAGATGAGCCAGAAATGAAGCTTATTCGGGTAGCAATACGATCTCTAAGTGATGGATTCTATCATCATCATCATCAATTTCATCGGTCCATCACTGCCCGAACCCTTTCCACCGATTTAAATCATGGTCAAGGGAATGATGAGAACAAGGATACCAATTCATCTGAGTCCAATGTTGTGCGTCGCATTTTTGGTGGGATCTCTGAGGATAATGCCTTCATTCAGAATCTTGACAGTATTGAGAAGGCTCGGTTTGGAATGGGGACGGGTTCTACTGAATTCGGAGGTGATTACAGTACGTTGCTTGATGGGATGGAGAAGAAACTGAATGATGCAGCTAAATACTTTGAATTCAATCCGGATGAGATTAACCAAGAAGATTATACCTTTAGAACAGACATGAATTTTAAGCCTGGTGTGACATATAACCCCGAGGATCTTGATCTTAGAAAACCAGGAGTTTGGAAACCTAGCAAACGGCCTGAGTTTCAAGTAACTACAGAGGAGGTTCTAAGGCAAGCAGATTTCCGGAATGTGAGATTCCTTGCGAACTTTTTGACTGATGCTGGAATACTCAACAAGAGGAGCAAGACTGGAATTAGTGCGAAAGCCCAAAGGAAAGTTGCAAGGGAGATCAAGACAGCCCGTGCTTTTGGATTGTTGCCTTTCACAACAATGGGGACAAAACAATTTGCATTTGGGCGAACGATGGAGGATCTTGATGAGGATTTTCGGTTGGAAGAGGAGTATGACACCCGAGCTGCTGACTTGGTTCAGGATCCTGTTGAATGA MGDEPEMKLIRVAIRSLSDGFYHHHHQFHRSITARTLSTDLNHGQGNDENKDTNSSESNVVRRIFGGISEDNAFIQNLDSIEKARFGMGTGSTEFGGDYSTLLDGMEKKLNDAAKYFEFNPDEINQEDYTFRTDMNFKPGVTYNPEDLDLRKPGVWKPSKRPEFQVTTEEVLRQADFRNVRFLANFLTDAGILNKRSKTGISAKAQRKVAREIKTARAFGLLPFTTMGTKQFAFGRTMEDLDEDFRLEEEYDTRAADLVQDPVE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00560.1 vs. NCBI nr
Match: gi|902192426|gb|KNA12037.1| (hypothetical protein SOVF_129510 [Spinacia oleracea]) HSP 1 Score: 515.4 bits (1326), Expect = 5.900e-143 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
BLAST of Spo00560.1 vs. NCBI nr
Match: gi|731348543|ref|XP_010685540.1| (PREDICTED: uncharacterized protein LOC104899946 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 331.3 bits (848), Expect = 1.600e-87 Identity = 181/261 (69.35%), Postives = 205/261 (78.54%), Query Frame = 1
BLAST of Spo00560.1 vs. NCBI nr
Match: gi|731348541|ref|XP_010685539.1| (PREDICTED: uncharacterized protein LOC104899946 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 330.5 bits (846), Expect = 2.700e-87 Identity = 181/261 (69.35%), Postives = 205/261 (78.54%), Query Frame = 1
BLAST of Spo00560.1 vs. NCBI nr
Match: gi|297745890|emb|CBI15946.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 261.9 bits (668), Expect = 1.200e-66 Identity = 156/276 (56.52%), Postives = 185/276 (67.03%), Query Frame = 1
BLAST of Spo00560.1 vs. NCBI nr
Match: gi|359478834|ref|XP_002279055.2| (PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]) HSP 1 Score: 260.0 bits (663), Expect = 4.500e-66 Identity = 155/275 (56.36%), Postives = 184/275 (66.91%), Query Frame = 1
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXP7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129510 PE=3 SV=1) HSP 1 Score: 515.4 bits (1326), Expect = 4.100e-143 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVC0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172020 PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 1.100e-87 Identity = 181/261 (69.35%), Postives = 205/261 (78.54%), Query Frame = 1
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172020 PE=3 SV=1) HSP 1 Score: 330.5 bits (846), Expect = 1.900e-87 Identity = 181/261 (69.35%), Postives = 205/261 (78.54%), Query Frame = 1
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Match: D7SJX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06690 PE=3 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 8.300e-67 Identity = 156/276 (56.52%), Postives = 185/276 (67.03%), Query Frame = 1
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Match: B9SS74_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_0618400 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 6.500e-64 Identity = 148/263 (56.27%), Postives = 185/263 (70.34%), Query Frame = 1
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Match: RS18_THET8 (30S ribosomal protein S18 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsR PE=1 SV=3) HSP 1 Score: 57.4 bits (137), Expect = 2.800e-7 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Match: RS18_THET2 (30S ribosomal protein S18 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsR PE=1 SV=2) HSP 1 Score: 57.4 bits (137), Expect = 2.800e-7 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Match: RS18_THETH (30S ribosomal protein S18 OS=Thermus thermophilus GN=rpsR PE=1 SV=3) HSP 1 Score: 55.8 bits (133), Expect = 8.100e-7 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 1
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Match: RS18_DEIDV (30S ribosomal protein S18 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rpsR PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 2.300e-6 Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 1
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Match: RS18_AQUAE (30S ribosomal protein S18 OS=Aquifex aeolicus (strain VF5) GN=rpsR PE=3 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.100e-6 Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 1
BLAST of Spo00560.1 vs. TAIR (Arabidopsis)
Match: AT1G07210.1 (Ribosomal protein S18) HSP 1 Score: 157.5 bits (397), Expect = 1.100e-38 Identity = 106/256 (41.41%), Postives = 149/256 (58.20%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00560.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00560.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo00560.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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