Spo00289 (gene)

Overview
NameSpo00289
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionBifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Locationchr5 : 5186601 .. 5186903 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA

mRNA sequence

ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA

Coding sequence (CDS)

ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA

Protein sequence

MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLSPVKC
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo00289.1Spo00289.1mRNA


Homology
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|902150744|gb|KNA05451.1| (hypothetical protein SOVF_190250 [Spinacia oleracea])

HSP 1 Score: 186.8 bits (473), Expect = 1.800e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

		  

Query: 12  MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN 71
           MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN
Sbjct: 1   MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN 60

Query: 72  QGGMLRAFGVDPNRCTELPASCGLSPVKC 101
           QGGMLRAFGVDPNRCTELPASCGLSPVKC
Sbjct: 61  QGGMLRAFGVDPNRCTELPASCGLSPVKC 89

BLAST of Spo00289.1 vs. NCBI nr
Match: gi|870858586|gb|KMT10074.1| (hypothetical protein BVRB_5g118370 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 134.0 bits (336), Expect = 1.400e-28
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1

		  

Query: 1   MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 60
           MA+ KVAVFL+MMV +   C+  C LNV DLMTCK+AVS SNPT PS  CC +++ L+A+
Sbjct: 1   MAITKVAVFLVMMVAVWGACHGACNLNVQDLMTCKSAVSTSNPTDPSPGCCNMVESLSAE 60

Query: 61  DIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLSPVKC 101
           DIQCLC YKTN+  +LR+FGVDP RCTELP  C L P+ C
Sbjct: 61  DIQCLCDYKTNKAYLLRSFGVDPERCTELPKLCNLPPISC 100

BLAST of Spo00289.1 vs. NCBI nr
Match: gi|870858587|gb|KMT10075.1| (hypothetical protein BVRB_5g118380 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 102.1 bits (253), Expect = 5.900e-19
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1

		  

Query: 3  MRKVAVFLIMMVTICVTCN-ADCK-LNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 62
          MRK+ VFL++MVT+  TCN A+C  LNV DL++C++AV+L+ PT+PS  CC  IKGL+AD
Sbjct: 1  MRKMFVFLVLMVTVWETCNGANCNNLNVMDLLSCRSAVTLTKPTNPSPECCKTIKGLSAD 60

Query: 63 DIQCLCTY-KTNQGGMLRAFGVDPNRCTELPASCGLS 97
          +IQC+C + K N G  +R+FGVDP+R   L A C +S
Sbjct: 61 NIQCVCGFIKVNNGTWVRSFGVDPDRVMHLSALCNIS 97

BLAST of Spo00289.1 vs. NCBI nr
Match: gi|848918787|ref|XP_012856566.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata])

HSP 1 Score: 70.5 bits (171), Expect = 1.900e-9
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1

		  

Query: 4   RKVAVFLIMMVTIC----VTCNAD--CKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGL 63
           +K+A+  I  V +      T N    CK+ + D + CK+A +  NP  PSAACC+   G+
Sbjct: 8   QKIAILAIFFVVVLGVATTTANGQMVCKMTLGDFLACKSAATPPNPPPPSAACCS---GI 67

Query: 64  NADDIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLS-PVKC 101
           +  D+ CLC++K N   +L +FG+DPN   +LP  C +  P KC
Sbjct: 68  SHADLSCLCSFKNNT--LLPSFGIDPNLALQLPKKCNIPLPSKC 106

BLAST of Spo00289.1 vs. NCBI nr
Match: gi|694424243|ref|XP_009339897.1| (PREDICTED: putative lipid-transfer protein DIR1 [Pyrus x bretschneideri])

HSP 1 Score: 68.2 bits (165), Expect = 9.500e-9
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1

		  

Query: 2   AMRKVAVFLIMMVTICVTCNAD----------CKLNVSDLMTCKAAVSLSNPTSPSAACC 61
           A +K+ V L  +V + +  N            C ++VSDLMTC+ AV+  NP  P+ ACC
Sbjct: 8   ARQKLVVVLAAVVLVAIAGNGGFVHVVNAQNICNVSVSDLMTCRPAVTSPNPAPPTKACC 67

Query: 62  AIIKGLNADDIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGL-SPVKC 101
           A +   N   + CLC+YK +   +L + G+DPN   +LPA C L  P  C
Sbjct: 68  AALSHAN---LSCLCSYKNS--SVLPSLGIDPNLALQLPAKCKLPHPANC 112

BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190250 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.300e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

		  

Query: 12  MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN 71
           MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN
Sbjct: 1   MMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTN 60

Query: 72  QGGMLRAFGVDPNRCTELPASCGLSPVKC 101
           QGGMLRAFGVDPNRCTELPASCGLSPVKC
Sbjct: 61  QGGMLRAFGVDPNRCTELPASCGLSPVKC 89

BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCZ7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118370 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.800e-29
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1

		  

Query: 1   MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 60
           MA+ KVAVFL+MMV +   C+  C LNV DLMTCK+AVS SNPT PS  CC +++ L+A+
Sbjct: 1   MAITKVAVFLVMMVAVWGACHGACNLNVQDLMTCKSAVSTSNPTDPSPGCCNMVESLSAE 60

Query: 61  DIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLSPVKC 101
           DIQCLC YKTN+  +LR+FGVDP RCTELP  C L P+ C
Sbjct: 61  DIQCLCDYKTNKAYLLRSFGVDPERCTELPKLCNLPPISC 100

BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8R2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118380 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.100e-19
Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1

		  

Query: 3  MRKVAVFLIMMVTICVTCN-ADCK-LNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 62
          MRK+ VFL++MVT+  TCN A+C  LNV DL++C++AV+L+ PT+PS  CC  IKGL+AD
Sbjct: 1  MRKMFVFLVLMVTVWETCNGANCNNLNVMDLLSCRSAVTLTKPTNPSPECCKTIKGLSAD 60

Query: 63 DIQCLCTY-KTNQGGMLRAFGVDPNRCTELPASCGLS 97
          +IQC+C + K N G  +R+FGVDP+R   L A C +S
Sbjct: 61 NIQCVCGFIKVNNGTWVRSFGVDPDRVMHLSALCNIS 97

BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A022Q0P8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016805mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1

		  

Query: 4   RKVAVFLIMMVTIC----VTCNAD--CKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGL 63
           +K+A+  I  V +      T N    CK+ + D + CK+A +  NP  PSAACC+   G+
Sbjct: 8   QKIAILAIFFVVVLGVATTTANGQMVCKMTLGDFLACKSAATPPNPPPPSAACCS---GI 67

Query: 64  NADDIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLS-PVKC 101
           +  D+ CLC++K N   +L +FG+DPN   +LP  C +  P KC
Sbjct: 68  SHADLSCLCSFKNNT--LLPSFGIDPNLALQLPKKCNIPLPSKC 106

BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: K7N5J7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-8
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 1

		  

Query: 10  LIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYK 69
           ++ ++ I V   + C +++ DLMTCK AV+  NPT PS  CC++   L+  D+ CLC+YK
Sbjct: 15  VVFLLLISVKGQSICNVSLPDLMTCKPAVTPPNPTPPSQQCCSV---LSHADLPCLCSYK 74

Query: 70  TNQGGMLRAFGVDPNRCTELPASCGL-SPVKC 101
            +   +L + G+DP    +LPA C L  P  C
Sbjct: 75  NSP--LLPSLGIDPKLALQLPAKCNLPHPPNC 101

BLAST of Spo00289.1 vs. ExPASy Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 9.500e-9
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1

		  

Query: 1  MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 60
          M M  + V + M+V   V  +  C ++  +L  CK AVS  NPTSPS  CC     L   
Sbjct: 8  MVMMAMIVIMAMLVDTSVAIDL-CGMSQDELNECKPAVSKENPTSPSQPCCT---ALQHA 67

Query: 61 DIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLS 97
          D  CLC YK +    L +FGVDP   + LP  CGL+
Sbjct: 68 DFACLCGYKNSP--WLGSFGVDPELASALPKQCGLA 97

BLAST of Spo00289.1 vs. TAIR (Arabidopsis)
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 5.400e-10
Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1

		  

Query: 1  MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNAD 60
          M M  + V + M+V   V  +  C ++  +L  CK AVS  NPTSPS  CC     L   
Sbjct: 8  MVMMAMIVIMAMLVDTSVAIDL-CGMSQDELNECKPAVSKENPTSPSQPCCT---ALQHA 67

Query: 61 DIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLS 97
          D  CLC YK +    L +FGVDP   + LP  CGL+
Sbjct: 68 DFACLCGYKNSP--WLGSFGVDPELASALPKQCGLA 97

The following BLAST results are available for this feature:
BLAST of Spo00289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902150744|gb|KNA05451.1|1.8e-44100.hypothetical protein SOVF_1902... [more]
gi|870858586|gb|KMT10074.1|1.4e-2862.0hypothetical protein BVRB_5g11... [more]
gi|870858587|gb|KMT10075.1|5.9e-1954.6hypothetical protein BVRB_5g11... [more]
gi|848918787|ref|XP_012856566.1|1.9e-937.5PREDICTED: putative lipid-tran... [more]
gi|694424243|ref|XP_009339897.1|9.5e-937.2PREDICTED: putative lipid-tran... [more]
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BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QFV3_SPIOL1.3e-44100.Uncharacterized protein OS=Spi... [more]
A0A0J8CCZ7_BETVU9.8e-2962.0Uncharacterized protein OS=Bet... [more]
A0A0J8C8R2_BETVU4.1e-1954.6Uncharacterized protein OS=Bet... [more]
A0A022Q0P8_ERYGU1.3e-937.5Uncharacterized protein OS=Ery... [more]
K7N5J7_SOYBN1.5e-839.1Uncharacterized protein OS=Gly... [more]
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BLAST of Spo00289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DIRL1_ARATH9.5e-940.6Putative lipid-transfer protei... [more]
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BLAST of Spo00289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G48485.15.4e-1040.6Bifunctional inhibitor/lipid-t... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 17..100
score: 3.2
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainSMARTSM00499aai_6coord: 24..100
score: 4.
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 23..98
score: 1.13
NoneNo IPR availableGENE3D1.10.110.10coord: 22..96
score: 2.
NoneNo IPR availablePANTHERPTHR33122FAMILY NOT NAMEDcoord: 1..95
score: 1.3
NoneNo IPR availablePANTHERPTHR33122:SF5SUBFAMILY NOT NAMEDcoord: 1..95
score: 1.3

RNA-Seq Expression
   



Co-expression