Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA ATGGCAATGAGAAAGGTTGCAGTATTTCTTATAATGATGGTTACAATTTGTGTTACTTGCAATGCTGACTGCAAGTTAAATGTGTCTGACCTGATGACCTGCAAGGCCGCGGTGTCTCTCAGCAATCCAACCAGCCCATCTGCAGCGTGCTGCGCCATTATCAAGGGTCTTAATGCTGATGATATTCAGTGTTTATGTACTTATAAGACTAACCAGGGTGGTATGTTGCGCGCTTTTGGGGTTGATCCTAACCGTTGCACTGAACTTCCTGCTAGCTGTGGTCTTTCTCCAGTCAAGTGTTGA MAMRKVAVFLIMMVTICVTCNADCKLNVSDLMTCKAAVSLSNPTSPSAACCAIIKGLNADDIQCLCTYKTNQGGMLRAFGVDPNRCTELPASCGLSPVKC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|902150744|gb|KNA05451.1| (hypothetical protein SOVF_190250 [Spinacia oleracea]) HSP 1 Score: 186.8 bits (473), Expect = 1.800e-44 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|870858586|gb|KMT10074.1| (hypothetical protein BVRB_5g118370 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 134.0 bits (336), Expect = 1.400e-28 Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|870858587|gb|KMT10075.1| (hypothetical protein BVRB_5g118380 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 102.1 bits (253), Expect = 5.900e-19 Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|848918787|ref|XP_012856566.1| (PREDICTED: putative lipid-transfer protein DIR1 [Erythranthe guttata]) HSP 1 Score: 70.5 bits (171), Expect = 1.900e-9 Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
BLAST of Spo00289.1 vs. NCBI nr
Match: gi|694424243|ref|XP_009339897.1| (PREDICTED: putative lipid-transfer protein DIR1 [Pyrus x bretschneideri]) HSP 1 Score: 68.2 bits (165), Expect = 9.500e-9 Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFV3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_190250 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 1.300e-44 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCZ7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118370 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 9.800e-29 Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = 1
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8R2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118380 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 4.100e-19 Identity = 53/97 (54.64%), Postives = 73/97 (75.26%), Query Frame = 1
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: A0A022Q0P8_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016805mg PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9 Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Match: K7N5J7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G248700 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.500e-8 Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 1
BLAST of Spo00289.1 vs. ExPASy Swiss-Prot
Match: DIRL1_ARATH (Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.500e-9 Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1
BLAST of Spo00289.1 vs. TAIR (Arabidopsis)
Match: AT5G48485.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein) HSP 1 Score: 60.8 bits (146), Expect = 5.400e-10 Identity = 39/96 (40.62%), Postives = 50/96 (52.08%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo00289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
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