Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTAATTACGCATCTTGTGCATTGTCAACAATCGGCAAACATAAATCAGCGAAAGTAATCATGCCATCAGGAGAAGTGAAGCAATTTCAGCAACCCATGAAAGCGGCGGAACTTATGCTTGAGATCCCGGGATATTTCCTCGTTAATTCCAAAGCTTTAAAAATTGGAAGGAAATTTTCAGCTCTTAATGCAGATGAAGATCTAGAGATCGGGAACGTTTACGTCATGTTTGGGATGAAGAGGGTGAATTCCCTTATTACAGCTGCTGATATGGGGGCTCTTTTCCTTGTTGCCAAACGCGGCTCTATCGGTGGCAACAAGGTTAGAGTAGTTCCATCATGGTCCGTCGAGAGTGATTCACCACCGCCGCATGCGGAGGAGGAGGAGGAGGCGCTTGATGACATGAAGGTCATGGTTGAGGAGTTGTTGTCGGAGTTTCAACATAGGAGGTCTATTTGCCGGTCTAAGAAACCGGTTCTTGAAACTATTGTGGAAGAACCTGTTAGTATTTTCTCACGGTGA ATGGGTAATTACGCATCTTGTGCATTGTCAACAATCGGCAAACATAAATCAGCGAAAGTAATCATGCCATCAGGAGAAGTGAAGCAATTTCAGCAACCCATGAAAGCGGCGGAACTTATGCTTGAGATCCCGGGATATTTCCTCGTTAATTCCAAAGCTTTAAAAATTGGAAGGAAATTTTCAGCTCTTAATGCAGATGAAGATCTAGAGATCGGGAACGTTTACGTCATGTTTGGGATGAAGAGGGTGAATTCCCTTATTACAGCTGCTGATATGGGGGCTCTTTTCCTTGTTGCCAAACGCGGCTCTATCGGTGGCAACAAGGTTAGAGTAGTTCCATCATGGTCCGTCGAGAGTGATTCACCACCGCCGCATGCGGAGGAGGAGGAGGAGGCGCTTGATGACATGAAGGTCATGGTTGAGGAGTTGTTGTCGGAGTTTCAACATAGGAGGTCTATTTGCCGGTCTAAGAAACCGGTTCTTGAAACTATTGTGGAAGAACCTGTTAGTATTTTCTCACGGTGA ATGGGTAATTACGCATCTTGTGCATTGTCAACAATCGGCAAACATAAATCAGCGAAAGTAATCATGCCATCAGGAGAAGTGAAGCAATTTCAGCAACCCATGAAAGCGGCGGAACTTATGCTTGAGATCCCGGGATATTTCCTCGTTAATTCCAAAGCTTTAAAAATTGGAAGGAAATTTTCAGCTCTTAATGCAGATGAAGATCTAGAGATCGGGAACGTTTACGTCATGTTTGGGATGAAGAGGGTGAATTCCCTTATTACAGCTGCTGATATGGGGGCTCTTTTCCTTGTTGCCAAACGCGGCTCTATCGGTGGCAACAAGGTTAGAGTAGTTCCATCATGGTCCGTCGAGAGTGATTCACCACCGCCGCATGCGGAGGAGGAGGAGGAGGCGCTTGATGACATGAAGGTCATGGTTGAGGAGTTGTTGTCGGAGTTTCAACATAGGAGGTCTATTTGCCGGTCTAAGAAACCGGTTCTTGAAACTATTGTGGAAGAACCTGTTAGTATTTTCTCACGGTGA MGNYASCALSTIGKHKSAKVIMPSGEVKQFQQPMKAAELMLEIPGYFLVNSKALKIGRKFSALNADEDLEIGNVYVMFGMKRVNSLITAADMGALFLVAKRGSIGGNKVRVVPSWSVESDSPPPHAEEEEEALDDMKVMVEELLSEFQHRRSICRSKKPVLETIVEEPVSIFSR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo00196.1 vs. NCBI nr
Match: gi|902191108|gb|KNA11767.1| (hypothetical protein SOVF_132030 [Spinacia oleracea]) HSP 1 Score: 339.7 bits (870), Expect = 2.900e-90 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo00196.1 vs. NCBI nr
Match: gi|731315942|ref|XP_010693577.1| (PREDICTED: uncharacterized protein LOC104906507 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 244.6 bits (623), Expect = 1.300e-61 Identity = 131/175 (74.86%), Postives = 150/175 (85.71%), Query Frame = 1
BLAST of Spo00196.1 vs. NCBI nr
Match: gi|645246296|ref|XP_008229288.1| (PREDICTED: uncharacterized protein LOC103328658 [Prunus mume]) HSP 1 Score: 183.0 bits (463), Expect = 4.600e-43 Identity = 109/197 (55.33%), Postives = 128/197 (64.97%), Query Frame = 1
BLAST of Spo00196.1 vs. NCBI nr
Match: gi|595945583|ref|XP_007216061.1| (hypothetical protein PRUPE_ppa017741mg [Prunus persica]) HSP 1 Score: 182.2 bits (461), Expect = 7.900e-43 Identity = 108/197 (54.82%), Postives = 128/197 (64.97%), Query Frame = 1
BLAST of Spo00196.1 vs. NCBI nr
Match: gi|1009128302|ref|XP_015881158.1| (PREDICTED: uncharacterized protein LOC107417109 [Ziziphus jujuba]) HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40 Identity = 104/191 (54.45%), Postives = 127/191 (66.49%), Query Frame = 1
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWX0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132030 PE=4 SV=1) HSP 1 Score: 339.7 bits (870), Expect = 2.100e-90 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FSC0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027410 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 9.000e-62 Identity = 131/175 (74.86%), Postives = 150/175 (85.71%), Query Frame = 1
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Match: M5XDU1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017741mg PE=4 SV=1) HSP 1 Score: 182.2 bits (461), Expect = 5.500e-43 Identity = 108/197 (54.82%), Postives = 128/197 (64.97%), Query Frame = 1
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Match: W9SQ68_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027115 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 5.700e-40 Identity = 97/180 (53.89%), Postives = 132/180 (73.33%), Query Frame = 1
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TWL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G341800 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39 Identity = 91/173 (52.60%), Postives = 125/173 (72.25%), Query Frame = 1
BLAST of Spo00196.1 vs. TAIR (Arabidopsis)
Match: AT5G17350.1 (unknown protein) HSP 1 Score: 124.8 bits (312), Expect = 5.300e-29 Identity = 84/188 (44.68%), Postives = 107/188 (56.91%), Query Frame = 1
BLAST of Spo00196.1 vs. TAIR (Arabidopsis)
Match: AT3G03280.1 (unknown protein) HSP 1 Score: 124.4 bits (311), Expect = 6.900e-29 Identity = 74/175 (42.29%), Postives = 104/175 (59.43%), Query Frame = 1
BLAST of Spo00196.1 vs. TAIR (Arabidopsis)
Match: AT4G37240.1 (unknown protein) HSP 1 Score: 53.9 bits (128), Expect = 1.100e-7 Identity = 31/110 (28.18%), Postives = 58/110 (52.73%), Query Frame = 1
BLAST of Spo00196.1 vs. TAIR (Arabidopsis)
Match: AT2G23690.1 (unknown protein) HSP 1 Score: 50.1 bits (118), Expect = 1.600e-6 Identity = 28/100 (28.00%), Postives = 52/100 (52.00%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo00196.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo00196.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo00196.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo00196.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
RNA-Seq Expression
Co-expression
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